mRNA_Ecto-sp13_S_contig773.18967.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig773.18967.1
Unique NamemRNA_Ecto-sp13_S_contig773.18967.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig773.18967.1 vs. uniprot
Match: D7FSU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU6_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 2.670e-47
Identity = 83/114 (72.81%), Postives = 98/114 (85.96%), Query Frame = 2 
Query:    2 QIVTSDDGGNAGAGDGDDEVMIEAPRKGAKALRVERSRVANSTAHQGITLEAWAAADPKANALANLSTAAAHKT*RKEVQGAGGLWTPDEGSAALQPATKLRSLDAVFDDREKC 343
            Q+VT D GG  GAGDGDD+VMI+APR GA+ALRVERSRVANSTA+QG+ +EAWAAA+PKANAL NLSTAA+H+  R+EV+ AGGLWTPDE SAAL+ AT+LRSLD  +  REKC
Sbjct:  183 QVVTIDGGGGTGAGDGDDKVMIKAPRTGARALRVERSRVANSTAYQGMAMEAWAAAEPKANALTNLSTAASHEAYREEVREAGGLWTPDEVSAALEAATQLRSLDDCYHRREKC 296
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig773.18967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSU6_ECTSI2.670e-4772.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig773contigEcto-sp13_S_contig773:21035..21701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size352
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001810.1
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464043.4594882-UTR-Ecto-sp13_S_contig773:21034..211601681464043.4594882-UTR-Ecto-sp13_S_contig773:21034..21160Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig773 21035..21160 -
1681464043.5026464-UTR-Ecto-sp13_S_contig773:21640..217011681464043.5026464-UTR-Ecto-sp13_S_contig773:21640..21701Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig773 21641..21701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464043.4712563-CDS-Ecto-sp13_S_contig773:21160..212071681464043.4712563-CDS-Ecto-sp13_S_contig773:21160..21207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig773 21161..21207 -
1681464043.4847555-CDS-Ecto-sp13_S_contig773:21522..216401681464043.4847555-CDS-Ecto-sp13_S_contig773:21522..21640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig773 21523..21640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig773.18967.1prot_Ecto-sp13_S_contig773.18967.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig773 21161..21640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig773.18967.1

>prot_Ecto-sp13_S_contig773.18967.1 ID=prot_Ecto-sp13_S_contig773.18967.1|Name=mRNA_Ecto-sp13_S_contig773.18967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MIEAPRKGAKALRVERSRVANSTAHQGITLEAWAAADPKANALANLSTAA
AHKT*
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mRNA from alignment at Ecto-sp13_S_contig773:21035..21701-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig773.18967.1 ID=mRNA_Ecto-sp13_S_contig773.18967.1|Name=mRNA_Ecto-sp13_S_contig773.18967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=667bp|location=Sequence derived from alignment at Ecto-sp13_S_contig773:21035..21701- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGATCGTGACCAGCGACGACGGTGGGAATGCGGGAGCCGGGGACGGCG
ATGATGAGGTGATGATTGAAGCACCCCGTAAGGGGGCGAAGGCGCTACGG
GTGGAACGATCGCGGGTGGCGAATTCCACCGCGCACCAGGGAATCACCCT
GGAGGCATGGGCTGCGGCGGACCCGAAAGGTGTGTGGGTGTTATGGTCTT
CACCCGGCGTTTCGTGCTCGTTGCAAAGACGCACCTATGCTAACAACTGA
GCCCCACGGACTGGGAAATGCCTACCCGCGGTGGAATTCCAGACTCTACA
CAGTCGGACTTGGAACACGTTTGAGGCATCGCCGGCGCTTAGAGCGAATT
TCCCGACGTTCGACCCATTTCGCCTGCAAGATGACTTCTTCGGCCGCTGG
GTTGTTAGTGTGCTGCCTGGTGCACCATGAACACGCGCCTGTTCTAATGT
GATTCTAATTTCAGATTGTTTTTTTCGTCTTCTCGTATCCAAAGCGAACG
CCCTCGCCAACCTCTCCACGGCGGCGGCTCATAAGACTTAACGCAAGGAG
GTCCAGGGGGCTGGAGGGTTGTGGACTCCCGACGAAGGGAGTGCGGCCCT
CCAGCCTGCGACCAAACTGCGGTCGTTAGACGCTGTTTTCGACGACCGCG
AAAAATGCGAAGCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig773:21035..21701-

>mRNA_Ecto-sp13_S_contig773.18967.1 ID=mRNA_Ecto-sp13_S_contig773.18967.1|Name=mRNA_Ecto-sp13_S_contig773.18967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig773:21035..21701- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGAAGCACCCCGTAAGGGGGCGAAGGCGCTACGGGTGGAACGATC
GCGGGTGGCGAATTCCACCGCGCACCAGGGAATCACCCTGGAGGCATGGG
CTGCGGCGGACCCGAAAGCGAACGCCCTCGCCAACCTCTCCACGGCGGCG
GCTCATAAGACTTAA
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