mRNA_Ecto-sp13_S_contig77274.18965.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77274.18965.1
Unique NamemRNA_Ecto-sp13_S_contig77274.18965.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77274.18965.1 vs. uniprot
Match: UPI001E34B712 (hypothetical protein n=1 Tax=Aurantimonas sp. VKM B-3413 TaxID=2779401 RepID=UPI001E34B712)

HSP 1 Score: 50.4 bits (119), Expect = 9.240e-6
Identity = 27/93 (29.03%), Postives = 44/93 (47.31%), Query Frame = 1 
Query:    1 MRVVDVLCLAAAIGGAAYVYNVKHEAEIAHDERRSLERDIGALSSXXXXXXXXXXALEQPARLQAVVSDLPDVFDLEPITSAHYVRISDIPFR 279
            +R +D++ +A  I  AA+ Y +KH+A+    E   LE+ I                L+QP RL+ +VS   D   L+P+     V   ++P R
Sbjct:    2 VRTLDIVLIAVMISAAAWTYKIKHDAQAIETEVNRLEKKIALQKETIQLLQADWTLLDQPGRLEDLVSAFADDLQLKPLQPNQIVEPDELPAR 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77274.18965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001E34B7129.240e-629.03hypothetical protein n=1 Tax=Aurantimonas sp. VKM ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77274contigEcto-sp13_S_contig77274:229..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categorysignal peptide
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464043.3281949-CDS-Ecto-sp13_S_contig77274:228..5281681464043.3281949-CDS-Ecto-sp13_S_contig77274:228..528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77274 229..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77274.18965.1prot_Ecto-sp13_S_contig77274.18965.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77274 229..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77274.18965.1

>prot_Ecto-sp13_S_contig77274.18965.1 ID=prot_Ecto-sp13_S_contig77274.18965.1|Name=mRNA_Ecto-sp13_S_contig77274.18965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MRVVDVLCLAAAIGGAAYVYNVKHEAEIAHDERRSLERDIGALSSDVGLL
EADLAALEQPARLQAVVSDLPDVFDLEPITSAHYVRISDIPFRSDLIIED
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mRNA from alignment at Ecto-sp13_S_contig77274:229..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77274.18965.1 ID=mRNA_Ecto-sp13_S_contig77274.18965.1|Name=mRNA_Ecto-sp13_S_contig77274.18965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77274:229..528- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGTGGTTGATGTGTTGTGCCTTGCTGCTGCCATTGGCGGTGCGGC
CTATGTCTACAATGTGAAACACGAGGCTGAAATCGCGCACGACGAGCGTC
GCAGCCTTGAGCGCGATATTGGCGCGCTTTCCAGTGATGTCGGTCTTCTG
GAAGCTGACTTGGCAGCCTTGGAACAACCGGCGCGACTGCAGGCTGTTGT
CTCCGATCTACCTGACGTTTTCGATTTGGAGCCGATTACATCGGCCCACT
ATGTGCGCATTTCCGATATCCCGTTTCGCAGTGACCTGATCATTGAGGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77274:229..528-

>mRNA_Ecto-sp13_S_contig77274.18965.1 ID=mRNA_Ecto-sp13_S_contig77274.18965.1|Name=mRNA_Ecto-sp13_S_contig77274.18965.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77274:229..528- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCGTGGTTGATGTGTTGTGCCTTGCTGCTGCCATTGGCGGTGCGGC
CTATGTCTACAATGTGAAACACGAGGCTGAAATCGCGCACGACGAGCGTC
GCAGCCTTGAGCGCGATATTGGCGCGCTTTCCAGTGATGTCGGTCTTCTG
GAAGCTGACTTGGCAGCCTTGGAACAACCGGCGCGACTGCAGGCTGTTGT
CTCCGATCTACCTGACGTTTTCGATTTGGAGCCGATTACATCGGCCCACT
ATGTGCGCATTTCCGATATCCCGTTTCGCAGTGACCTGATCATTGAGGAT
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