mRNA_Ecto-sp13_S_contig7727.18964.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7727.18964.1
Unique NamemRNA_Ecto-sp13_S_contig7727.18964.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7727.18964.1 vs. uniprot
Match: D7FL86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL86_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.860e-77
Identity = 134/137 (97.81%), Postives = 134/137 (97.81%), Query Frame = 1 
Query:    1 IEIFQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWRKCGGESLGSKVR 411
            IE FQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMW KCGGESLGSK R
Sbjct:   20 IETFQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSKAR 156
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BLAST of mRNA_Ecto-sp13_S_contig7727.18964.1 vs. uniprot
Match: A0A6H5KTC9_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC9_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.450e-69
Identity = 114/146 (78.08%), Postives = 116/146 (79.45%), Query Frame = 1 
Query:   13 QDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXX-------------SRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWRKCGGESLGSKVR 411
            +DVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLR                             SRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWF+VDECDVDGGDDMW KCGGESLGSKVR
Sbjct:  131 EDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRQDGFVFANYVVAALVRVFRLLKXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFVVDECDVDGGDDMWPKCGGESLGSKVR 276
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BLAST of mRNA_Ecto-sp13_S_contig7727.18964.1 vs. uniprot
Match: D8LJT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT9_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 3.210e-66
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 1 
Query:   13 QDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWRKCGGESLGSK 405
            +DVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMW KCGGESLGSK
Sbjct:  176 EDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK 306
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BLAST of mRNA_Ecto-sp13_S_contig7727.18964.1 vs. uniprot
Match: A0A2D4BDQ3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDQ3_PYTIN)

HSP 1 Score: 52.4 bits (124), Expect = 3.840e-5
Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = 1 
Query:   13 QDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFIT-----TVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVD 354
            +D+L+  R  IA++YV+TWF PD++ ++P   + G  +      +V SL+    +RXXXXXXXXXXXX    +RK+  V     ++    RL +++G+++   H+L C W +V   D D
Sbjct:  165 EDMLITDRYLIAKRYVTTWFLPDLISSLPTEYIFGGVMDGSHDKSVVSLKLTRVIRXXXXXXXXXXXXLRQFARKIEDV---LEIDAVGARLSQVIGQVLLVTHILACFWHLVGYSDDD 280
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7727.18964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FL86_ECTSI1.860e-7797.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTC9_9PHAE1.450e-6978.08Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LJT9_ECTSI3.210e-6698.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4BDQ3_PYTIN3.840e-536.13Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7727contigEcto-sp13_S_contig7727:5170..6277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score226.9
Seed ortholog evalue5.9e-57
Seed eggNOG ortholog2880.D8LJT9
Model size411
KEGG koko:K21867
KEGG TC1.A.1.4
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
Cds size411
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464043.291737-CDS-Ecto-sp13_S_contig7727:5169..54161681464043.291737-CDS-Ecto-sp13_S_contig7727:5169..5416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7727 5170..5416 -
1681464043.3028352-CDS-Ecto-sp13_S_contig7727:6113..62771681464043.3028352-CDS-Ecto-sp13_S_contig7727:6113..6277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7727 6114..6277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7727.18964.1prot_Ecto-sp13_S_contig7727.18964.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7727 5170..6277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7727.18964.1

>prot_Ecto-sp13_S_contig7727.18964.1 ID=prot_Ecto-sp13_S_contig7727.18964.1|Name=mRNA_Ecto-sp13_S_contig7727.18964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
IEIFQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQS
VNFLRLVRVFRLLKLMRILRLSRKMAKVDFSRRLNPSIVRLIKLLGKIVF
AGHLLGCTWFMVDECDVDGGDDMWRKCGGESLGSKVR
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mRNA from alignment at Ecto-sp13_S_contig7727:5170..6277-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7727.18964.1 ID=mRNA_Ecto-sp13_S_contig7727.18964.1|Name=mRNA_Ecto-sp13_S_contig7727.18964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7727:5170..6277- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGAAATATTTCAGGACGTTTTGGTTTACAAGCGAGCGACCATCGCGAG
GAAGTACGTGTCGACGTGGTTTGGGCCGGACGTCTTGGGTACCGTGCCTT
TCGCGTCACTCATAGGGCTCTTCATCACCACCGTGGATAGCCTGCAAAGC
GTCAACTTCTTACGGTAAGATGGCTTCGTTTTTACCAACTACGTAGTAGC
AGCGTTCGGTGTTTTCTTGGCGTTGTTTCTGCTACGGACGTCGCTGGCCA
AGGGTGTGCATCTTTCTGATTTTACTTTTGTCGGTGCGTGTACGCCCGTT
CTTGTGCCTGTTCTTGCGCCTGTTCTTGAGCGAAAGGGCAGATCAGTCGT
CAGCAAGTCAAGTTCCAACGCATGATCTGAGTCACCTGTGTCCTCTTTTA
TCCTCGCGTCAAGATTGGACCTGATCGGCCCGATCTAAGCGACGGGTTCG
GTGAGACAATACCTGCCGTTGTCTTCTGGTGTTTCCGGCTGTGCAGGGTG
TAAGAATAGAAACGGAGTAGATGCATGATAGGGTTGCCTGTTCGCTGTCC
TGAAAAACATCAGCCACGTTCACCGACTGACCAATAACGACACGTCAATA
ACCAATCAATGACAAGCGATGCGATCTTATCCAAATACCATCATCAGTGT
GACGAACACAGCGAGAGCAGGGTGCTCGGGTTCCGTGATACCTTGGGTCG
TGGTTGCTGGTGGTACTGTTGGTGTTGAACCGGTGTTAGTATTGTCGTTA
TCCTCATCAGCAATGTAGCTCGCGGCAAACACGTACACCGTGGTTGCAAG
CGAGCCAAACAAAGACCTGGACACAACTAACCGCCGCAAGCCAATGGTGC
TGCAATGTCAGGCTGGTGCGTGTGTTCCGGCTGCTGAAGCTGATGCGGAT
CCTGCGGCTCTCCAGAAAAATGGCGAAAGTCGACTTCTCCCGGCGGTTAA
ACCCCTCGATCGTGCGGCTCATCAAGCTGCTCGGAAAGATCGTGTTTGCT
GGACACTTGCTTGGCTGCACGTGGTTCATGGTGGATGAGTGCGACGTCGA
CGGCGGTGACGACATGTGGCGGAAATGTGGAGGGGAAAGCCTCGGCTCAA
AAGTGAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7727:5170..6277-

>mRNA_Ecto-sp13_S_contig7727.18964.1 ID=mRNA_Ecto-sp13_S_contig7727.18964.1|Name=mRNA_Ecto-sp13_S_contig7727.18964.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7727:5170..6277- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGAAATATTTCAGGACGTTTTGGTTTACAAGCGAGCGACCATCGCGAG
GAAGTACGTGTCGACGTGGTTTGGGCCGGACGTCTTGGGTACCGTGCCTT
TCGCGTCACTCATAGGGCTCTTCATCACCACCGTGGATAGCCTGCAAAGC
GTCAACTTCTTACGGCTGGTGCGTGTGTTCCGGCTGCTGAAGCTGATGCG
GATCCTGCGGCTCTCCAGAAAAATGGCGAAAGTCGACTTCTCCCGGCGGT
TAAACCCCTCGATCGTGCGGCTCATCAAGCTGCTCGGAAAGATCGTGTTT
GCTGGACACTTGCTTGGCTGCACGTGGTTCATGGTGGATGAGTGCGACGT
CGACGGCGGTGACGACATGTGGCGGAAATGTGGAGGGGAAAGCCTCGGCT
CAAAAGTGAGA
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