mRNA_Ecto-sp13_S_contig7720.18959.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7720.18959.1
Unique NamemRNA_Ecto-sp13_S_contig7720.18959.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7720.18959.1 vs. uniprot
Match: A0A835ZAZ6_9STRA (BEACH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.290e-15
Identity = 53/121 (43.80%), Postives = 60/121 (49.59%), Query Frame = 2 
Query:   29 EEPWSFTADAKRS-KKRARFNLLALEHDEYYFQDYSAYFYPSLGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXNVFGLDDGGGLGSRPRQQGRLKLCSRGLLFEPADRLLPLVKYPFRHME 388
            +E WSFTA      +K+ RFNLL LEH EYYFQDYS  + P   +                            N   L   G +  R    GRLKLCSRGLLFEPAD  LP VKYPFR M+
Sbjct:    5 KEEWSFTAAGGTGPRKKTRFNLLLLEHGEYYFQDYSVNYLPQARNMLPLPS----------------------NTGTLTSKGNVQIR----GRLKLCSRGLLFEPADVSLPCVKYPFRSMD 99
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7720.18959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZAZ6_9STRA5.290e-1543.80BEACH domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7720contigEcto-sp13_S_contig7720:3807..6567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size408
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464042.9706419-UTR-Ecto-sp13_S_contig7720:3806..38591681464042.9706419-UTR-Ecto-sp13_S_contig7720:3806..3859Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7720 3807..3859 +
1681464043.0013847-UTR-Ecto-sp13_S_contig7720:6419..65671681464043.0013847-UTR-Ecto-sp13_S_contig7720:6419..6567Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7720 6420..6567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464042.9809856-CDS-Ecto-sp13_S_contig7720:3859..39301681464042.9809856-CDS-Ecto-sp13_S_contig7720:3859..3930Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7720 3860..3930 +
1681464042.9918404-CDS-Ecto-sp13_S_contig7720:6283..64191681464042.9918404-CDS-Ecto-sp13_S_contig7720:6283..6419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7720 6284..6419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7720.18959.1prot_Ecto-sp13_S_contig7720.18959.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7720 3860..6419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7720.18959.1

>prot_Ecto-sp13_S_contig7720.18959.1 ID=prot_Ecto-sp13_S_contig7720.18959.1|Name=mRNA_Ecto-sp13_S_contig7720.18959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MPRDPRSGRGSTCWPWNTMSTISRTTAHTSTLPWVRPQLEGEGAPAAAAA
VGLPPTPRPATVVTTCSG*
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mRNA from alignment at Ecto-sp13_S_contig7720:3807..6567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7720.18959.1 ID=mRNA_Ecto-sp13_S_contig7720.18959.1|Name=mRNA_Ecto-sp13_S_contig7720.18959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2761bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7720:3807..6567+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGCAAAACGCACGATAGCCGGCGATTGAGGAGCCATGGAGCTTCACGG
CGGATGCCAAGAGATCCAAGAAGCGGGCGCGGTTCAACCTGCTGGCCCTG
GAACACGATGAGTACTATTTCCAGGTGCAAACGCAGCTCATGTTTAGAGC
GCAAACGCGGAAGGATTCCGTTCAAAATTAGGCTGGCGGGGTAAGCATCA
AGTGTTGCTACAAGCAGTTCGGCACGATCTATGATGGCATGATGACCGTA
ACATGGCGGGGTTTGCTTGGCCGTGGGTCCCGGCACGTCCATCACAGCCT
TGAGTGCTGTCGCTTATCGTGCATTTTACCGTTGCGGGTCATAGGTTCGG
GTGATGCATACTCCTCTATCGCCACGTGCGGTTTGCGTGGGCCGACCAAA
GCGCGGTATTGTAGTTCCGCCTCTGAGCTTCACCCGCTTCAGGCGCGTTG
AACCTTGAGCGATGGAGTATGGGTGCTGCTCACCCTCGTTTGTGTGCCTC
CACCATCCAGCATTCGCTTGGTCCTGTGGTACACAGGGGTTAAGCGATGC
AGCAGCGGGAAGGAGGCGGTGCTTCCGACTGTTGTTCCCGCGTGTGGTGT
CTCTTTGGAATTCAAGTAGGAGCAGCTCTCGAAGGCAGTGAGCGAGACTT
TTTTGGTAGTGCCGTTGCGGAGCGGTACATCTGTGAAGTCGTGACAGATG
TTGAGGTTGCGATGCATGAGAGGTATTTGCTGCGGTCGTGCAGCAGGGAT
GGGGGGGCAAAGTAGGATTGCCGCCCAACAGACACATGGGGACGTCAGCA
GCAACAATACACACGCCTTGGTCAAAACACACGACCCCTCTAGGGTAAGC
CGCTGTTATGGCAACACAGGAAAGCATGAGCAAGCCTCTGTTAGGGCAAC
GAAAAGCATGAGCCTGTCTTTTCGTGTGACGGTAGTGCTGCACGTAGACA
GACGTTACTCAATATCTTGTTTCAAAACAGTTGAGATCTTGCCTTCCCCC
CGCTCTTGTGCGGTGTTGCCGTATTGCACCGTTGTCAGCATTTTACCCTT
TCGCCGCCGCTACGAAGCCAGCAATTGTTGCACATACCACAAAGCAGAAC
AACGGCAATCTACATGTCTACTCACCTAACTTTGGTGCAAGCTCTTCCGA
GTATCAGCGATGTTATCAGAGATGTAGATAGGTTCTAGCAAAACAGGTTG
TTCACCGAGCCATCGTCTGAACGGCTACAACGAAGAGGACTCTTCCGAAC
TATTATACAGTCAATTGCACCATACATACAACATCAGATACCTTTAGGTT
CTCTCGTGAGCAGGGTGCACGGGTACCCCACCTAACAACTGACGGTAAAT
CTTGATTATTTGGTGTGTAGAAGATGGCATCGCTTGTCGCTTCCTTTTCC
TTTTTTATCAAGCGACGCAATGACTCCCGTGGCATATTCACTTTCACCAG
CCCCCGCGCAGCTCTGCGTCGCCCGATTTTCCCGATATTCCCGGAAGATG
GCGATGTTGGAGACTCCCAACGTCCAGCATTACGTCTTCTCTACTACTGC
TGATGCGTCGTTCGGTTCTGATACCTACCCCCGGCGTCCCTATTGAGGTT
ACGTCGAGTTCCGACACTCGCTGGGAAGGGGGAGGGGGGGGGGGGGGGGG
GGGCGTACTCTTATGTTTTTTTGCATGCCTTAGCGGTTAGACCATTGACC
ACGCGTCCTCGAGAGGACGGAGCGTTGTCCCCACAGGACCGATCACGGAT
GGCCAATCGCTTCTTCCTACTTTGCGGAAGGTGGCTCGAAAGTGGCTTCC
CTAGTCTATCTATCCTACCGATATCACTTCCCGCCTTTTCAACTCACTTC
CTATACCCCAGTACAGCTAACGTCTTCTCCGCTATCCCATGCCTCAAACA
TATCCCCGTACTTTTCTTCTACTTTCCCAAGCTCAGTCACGCACACTTCC
CTCTCCTTCTTGTACCAGGGACACTCCGCGACTACATGAATACGGTCTTC
GCATTCGAAGGGGGGGGGTGGTGGTGATCTCAAGATGCTTCATGGCCGTG
TAGTGGTAGCTTGTCCTAACATCCCTTCAGAGCCCAACCGCGGAGTGTTT
AGTCCACAGGGGGGGGCGGGGTTAACATGCTTTCATAGCCCAAGTAGCGT
AGTATCTTGAGCTTTCGCCGGCTACTCGCACGCAGTTGATTTACGTGAGG
TGTCCGGCGAGCCGCCGGGGGGGGGGGGGGGGGGGGGGGCAAGTCATTTC
GAGGCACGAAAGCCACGGAGAGAGAGGGAGCGAAGGGGTCAGACAACGAC
ATTTTCCACCGTAGCTCTTTGGATTCCAGGCGATCGTTGTCGTCCTTGCT
TGTTGTTTCGTCCGCCCCCCCCCTTTGCTGCAAAAAGCTGGCCGGTGTCT
ACTATTAATACACTCATCCTCACGCCCCAACAGCATCTCAACGTAACTGT
GAAGTTTTTTTTTGTTCCCTCCCCCAGGACTACAGCGCATACTTCTACCC
TTCCCTGGGTTCGGCCGCAGCTGGAGGGGGAGGGGGCGCCGGCAGCAGCA
GCAGCGGTGGGGCTCCCACCAACACCGCGACCAGCAACAGTAGTAACAAC
GTGTTCGGGTTAGACGATGGCGGTGGGCTCGGAAGCAGGCCACGACAGCA
GGGGAGGCTTAAACTCTGCAGCAGGGGGCTCCTCTTCGAGCCGGCGGACC
GCCTGCTGCCCCTCGTCAAGTACCCCTTCCGACACATGGAAACCCAGATG
GAGTCTGTGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7720:3807..6567+

>mRNA_Ecto-sp13_S_contig7720.18959.1 ID=mRNA_Ecto-sp13_S_contig7720.18959.1|Name=mRNA_Ecto-sp13_S_contig7720.18959.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7720:3807..6567+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAAGAGATCCAAGAAGCGGGCGCGGTTCAACCTGCTGGCCCTGGAA
CACGATGAGTACTATTTCCAGGACTACAGCGCATACTTCTACCCTTCCCT
GGGTTCGGCCGCAGCTGGAGGGGGAGGGGGCGCCGGCAGCAGCAGCAGCG
GTGGGGCTCCCACCAACACCGCGACCAGCAACAGTAGTAACAACGTGTTC
GGGTTAG
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