mRNA_Ecto-sp13_S_contig7718.18956.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7718.18956.1
Unique NamemRNA_Ecto-sp13_S_contig7718.18956.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7718.18956.1 vs. uniprot
Match: A0A6H5KD05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD05_9PHAE)

HSP 1 Score: 523 bits (1346), Expect = 7.490e-179
Identity = 328/365 (89.86%), Postives = 334/365 (91.51%), Query Frame = 1 
Query:  301 SKPVPKTKFSKRASRGLKAAPAYMSFDDVDVEADDDSDGELFVEDSRDN--RGSGAARSPGSVAAQAASSKSASAYTVNAPSVYRAPSLAPPAXXXXXXXXXSDAPAGGPEDQEGYSAAAAGRGEDDGSSGVPVAVVSAKENMSSHRAIAGDSSAEIWSSGSGLRGGLAGGLRLGGEQRVMSIPRDGSMLESARPHGQSESFHGYKGYPGYEPDTPVAQQLTQPGRAHATDTLTINPGADVSDPRTKHAGAAGPTPSSVRFTPREMEVSSEIGSTMTPVGREQQQHYXXXXXXXXXALGMDIDGREDDVXXXXXXXXXXXXXXXXXXXXXXXYQQPVISPSGTTSMEMATGLRPPEPRGRAVQAE 1389
            SKPVPKTKFSKRASRGLKAA AYMSFDDVDVE DDDSDGELFVEDSRDN  R SGAARSP S AAQAASSKSASAYTVNAPSVYRAPSLAPP XXXXXXXX SDAP GGPEDQ+GYSAAAAGRG  DGSSGVPVA VSAKENMSSHRAIAGDSSAEIWSSGSGLRGGLAGGLRLGGEQRV SIPRDGSMLESARPHGQSESFHGYKGYPGYEPDTPVAQQLTQPGRAHATD LTINPGADVSDPRT HAGAAGPTPSSVRFTPREMEVSS IGS+MTPV RE+QQHY XXXXXXXXA GMDIDGR++ V    XXXXXXXXXXXXXXXXX    QPVISPSGTTSMEMATGLRPPEPRGRA + E
Sbjct:   20 SKPVPKTKFSKRASRGLKAASAYMSFDDVDVE-DDDSDGELFVEDSRDNDKRASGAARSPVSFAAQAASSKSASAYTVNAPSVYRAPSLAPPXXXXXXXXXSSDAPTGGPEDQDGYSAAAAGRGGSDGSSGVPVAAVSAKENMSSHRAIAGDSSAEIWSSGSGLRGGLAGGLRLGGEQRVTSIPRDGSMLESARPHGQSESFHGYKGYPGYEPDTPVAQQLTQPGRAHATDALTINPGADVSDPRTTHAGAAGPTPSSVRFTPREMEVSSGIGSSMTPVEREEQQHYQXXXXXXXXASGMDIDGRDEYVEEQQXXXXXXXXXXXXXXXXX----QPVISPSGTTSMEMATGLRPPEPRGRAAEVE 379
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BLAST of mRNA_Ecto-sp13_S_contig7718.18956.1 vs. uniprot
Match: D8LTK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK7_ECTSI)

HSP 1 Score: 401 bits (1031), Expect = 3.800e-133
Identity = 232/242 (95.87%), Postives = 234/242 (96.69%), Query Frame = 1 
Query:  370 MSFDDVDVEADDDSDGELFVEDSRDNRGSGAARSPGSVAAQAASSKSASAYTVNAPSVYRAPSLAPPAXXXXXXXXXSDAPAGGPEDQEGYSAAAAGRGEDDGSSGVPVAVV-SAKENMSSHRAIAGDSSAEIWSSGSGLRGGLAGGLRLGGEQRVMSIPRDGSMLESARPHGQSESFHGYKGYPGYEPDTPVAQQLTQPGRAHATDTLTINPGADVSDPRTKHAGAAGPTPSSVRFTPREM 1092
            MSFDDVDVE DDDSDGELFVEDSRDNRGSGA+RSPGSVAAQAASSKSASAYTVNAPSVYRAPSLAP  XXXXXXXXXSDAPAGGPEDQEGYSAAAAGRGEDDGSSGVPVAV  SAKENMSSH+AIAGDSSAEI SSGSGLRGGLAGGLRLGGEQRVMSIPRDGSMLESARPHGQSESFHGYKGYPGYEPDTPVAQQLTQPGRAHATD LTINPGADVSDPRTKHAGAAGPTPSSVRFTP EM
Sbjct:    1 MSFDDVDVE-DDDSDGELFVEDSRDNRGSGASRSPGSVAAQAASSKSASAYTVNAPSVYRAPSLAPXXXXXXXXXXXSDAPAGGPEDQEGYSAAAAGRGEDDGSSGVPVAVAASAKENMSSHQAIAGDSSAEILSSGSGLRGGLAGGLRLGGEQRVMSIPRDGSMLESARPHGQSESFHGYKGYPGYEPDTPVAQQLTQPGRAHATDALTINPGADVSDPRTKHAGAAGPTPSSVRFTPMEM 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7718.18956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KD05_9PHAE7.490e-17989.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTK7_ECTSI3.800e-13395.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7718contigEcto-sp13_S_contig7718:2892..7013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1401
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_003720.1
Cds size1401
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464042.6716852-CDS-Ecto-sp13_S_contig7718:2891..32881681464042.6716852-CDS-Ecto-sp13_S_contig7718:2891..3288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7718 2892..3288 +
1681464042.6885235-CDS-Ecto-sp13_S_contig7718:3928..43981681464042.6885235-CDS-Ecto-sp13_S_contig7718:3928..4398Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7718 3929..4398 +
1681464042.7033253-CDS-Ecto-sp13_S_contig7718:5729..58281681464042.7033253-CDS-Ecto-sp13_S_contig7718:5729..5828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7718 5730..5828 +
1681464042.7193153-CDS-Ecto-sp13_S_contig7718:6360..66181681464042.7193153-CDS-Ecto-sp13_S_contig7718:6360..6618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7718 6361..6618 +
1681464042.7291987-CDS-Ecto-sp13_S_contig7718:6836..70131681464042.7291987-CDS-Ecto-sp13_S_contig7718:6836..7013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7718 6837..7013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7718.18956.1prot_Ecto-sp13_S_contig7718.18956.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7718 2892..7013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7718.18956.1

>prot_Ecto-sp13_S_contig7718.18956.1 ID=prot_Ecto-sp13_S_contig7718.18956.1|Name=mRNA_Ecto-sp13_S_contig7718.18956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=467bp
LRPTRNRQGASQTVTLSSKPGSQQQLAGGNGTTATPSIASEAAAPRAAAA
AAAADAAAAPAPTVSASTPAAAAPAAAAAGTEPSAAPAPAPAAAAAAAAV
SKPVPKTKFSKRASRGLKAAPAYMSFDDVDVEADDDSDGELFVEDSRDNR
GSGAARSPGSVAAQAASSKSASAYTVNAPSVYRAPSLAPPAAAAPAAPAS
SDAPAGGPEDQEGYSAAAAGRGEDDGSSGVPVAVVSAKENMSSHRAIAGD
SSAEIWSSGSGLRGGLAGGLRLGGEQRVMSIPRDGSMLESARPHGQSESF
HGYKGYPGYEPDTPVAQQLTQPGRAHATDTLTINPGADVSDPRTKHAGAA
GPTPSSVRFTPREMEVSSEIGSTMTPVGREQQQHYQQQQYQQEQALGMDI
DGREDDVEEQQQQQQQQQHQSRQRRRQQRQYQQPVISPSGTTSMEMATGL
RPPEPRGRAVQAEVGG*
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mRNA from alignment at Ecto-sp13_S_contig7718:2892..7013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7718.18956.1 ID=mRNA_Ecto-sp13_S_contig7718.18956.1|Name=mRNA_Ecto-sp13_S_contig7718.18956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7718:2892..7013+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAGACCAACAAGGAACAGGCAGGGGGCCTCGCAAACCGTCACGTTATC
CTCCAAGCCTGGGTCCCAGCAGCAGCTTGCGGGAGGCAACGGAACCACAG
CAACCCCGAGCATTGCTTCCGAAGCGGCAGCACCGCGAGCGGCGGCAGCG
GCAGCGGCGGCGGATGCAGCAGCGGCGCCAGCGCCGACGGTCTCAGCATC
GACGCCTGCTGCGGCAGCACCGGCGGCGGCGGCGGCGGGAACTGAGCCAT
CGGCTGCGCCTGCACCGGCGCCTGCGGCGGCGGCAGCGGCAGCGGCTGTG
TCGAAGCCAGTCCCGAAGACGAAGTTCAGCAAGCGCGCGTCGAGGGGGCT
CAAGGCTGCCCCCGCCTACATGTCGTTCGACGATGTCGATGTCGAAGGTT
TGTGACTGACCTTTGAGTGGGTTTGTTGTTTTGAAAGTTGTAGACACAGC
AGCAAGCACTGTACGTTACTCACACCCCTAGATATTGTTTTTGCTCGTTT
GTGTGTCTCTGTTGCTCGAACGAACGCACTGCCATGCCGATGTTTTTTCC
TTGTGCGTGTGCGTATGAAACAATATTGTGCATATACGTAGGCCGCTTTG
CGCGCAGAAAGAATACTGGGGCATGATTTAGTTTGTTTCTTTTTACATTG
GGATAAGTACAGTAGTGTTCGAAAGAAGAGGTATCCTTAGGGTCGGCAAA
TAAGCGATCTCAGAGTTCTACGATTCTTGTCCTATTTTGTGCTGAAGGAA
TGTGTTTCCTCAAAATGTATGTGTGGCGGTGGAGCGAGATGGTGAAGAAA
GCAGACAAAAGGGTTCCATTTTTTTCTTTCATTGTGCACCACGAAGTTCC
GTCTACAAGGGGTCGAGCTCGCCTCATCATATCGATTTTGAGGAACAGTA
TCGCTCCGCGGGCTTTTGTACTCTGCCTCCTGGTCGTCTCCTACTTCCTA
GGCTGCTGTACTTAGATCGAACTCGAATGCCGGCCTCTTACTCGCCCCGC
CCAAACGATGCATCGTCAACCAACCAACCAATCGGAGCAGACGATGACTC
CGACGGCGAGCTGTTCGTTGAGGACTCGCGCGACAATCGCGGCTCGGGCG
CCGCCCGCTCCCCTGGAAGCGTCGCTGCGCAGGCCGCCTCCTCCAAGTCG
GCCTCCGCCTACACCGTCAACGCGCCGTCGGTGTACCGGGCGCCGAGCCT
CGCACCGCCAGCGGCAGCCGCCCCCGCGGCCCCGGCCTCGAGCGACGCTC
CGGCTGGGGGCCCCGAAGACCAGGAGGGGTACAGCGCTGCGGCGGCGGGC
AGAGGCGAGGACGATGGAAGTTCCGGGGTTCCGGTGGCGGTGGTTTCGGC
GAAGGAGAACATGTCGAGCCACCGGGCGATCGCGGGAGATTCGTCCGCGG
AGATATGGTCGAGCGGGAGCGGGCTCAGGGGGGGGCTGGCGGGGGGCCTG
CGACTGGGAGGGGAGCAGCGCGTGATGTCTATCCCGAGGGACGGGAGCAT
GCTGGAGGTATGATACTGTACGTGCAGCTAGGGTTTAGGTGTTACAGTGT
TCCTCCGGTGCACCTTGTTGTTTGCGAACGTCTGGCAGGAGCGCACGGTG
CAGGTGCGTAAATACAGCTGTAGTATGCGGTGGGTAAGGGTTGGCTTCGG
GGCACCGTGTTTTGTCTAGCTGATGGCGCCGCCTTCTGGGGTAAGGGTGA
AGATGTATGGAGACTGCGGCGCCTCTGTCGGCGTTGGTGTCGGCGCCGGC
GCTGGGTGCGGTGGGGTGCGGTGCGGTGCGGTGGGGTGCGGTGCGGTGCG
GTGCGGTGCGGTGCGGTTCTGCTGTCGGGTCGTCGTCCTGAAAGGGTGAT
GACGCTGCTGATGATGGAGAGGTTGTCGTTGCTGCGCTGGGGAAAGTGTT
GATGTCTGTGGTTGGCACCGACGCGCGCCAACGCCCCTGTAACGGCTGGT
TAATGAAAATGGTGCTTGTGCGTGTCTCGTGAAAAATGAATAATCCCACT
TTGCGGGACGTTGTTTGGAGATATTTCGGCATGTTTGTAGACGCACCAGC
TCGCCTTAGTCACATAGACAGGAGCAAGGCCATACAGAAGTTTATGCCGT
TGCTCCATTGCTCTTCCGCTGTGCTTGCCCTTCAAGTATCGCCCGAAACA
CTTAGGTTTTCTGTTATTCCAACGTCGACCGTGTGTTCCAGTTTTGTATG
TTGCCAGTAGTACACACGATTCAATCACCATTTATGCATATGTGTTTGGG
CACACACTACATCTGCTGTCAGCAACAAACTCCCGGTTCGCCTGGCTACT
CCGAATTTTCGACATCACGCGCTGATGTTCAGAACGTTCCGAGGTTTCCC
AATGAACCAGGTGATGTGATGCGTGTAGAACACAGCAGTCGAAGTCGTTG
TCAGAAGAATCAGACGAAATTGAAGGGTAAATTGTCGGAAACTTGTGCTT
GTAGCTCCACTGATGTCGTCATTGGTTGTGGTGATGGTGCTGGGAGATTG
ATGTTAGCTCCACAACTTCTCTCGTTGTAGGATATGGGTGTGAGTGTGAA
GGGATGGAAACACGACATATTAGACGAAAATGTCAACAACCTCGGAAATG
AAGGCAGAGCACAGAGAGAACGATGAATCAACATGTGTTGTCGAGCAACG
CGGTTGTCAAGAACGGTGCCCGGTGTCTTGACTCCAAATAATGAATCAGA
TGTGTGAGCAGACGTGCATGGAGACGTGATACAGGGGGAGCAGCGGACGG
GAATGTCCCCCACTACCTACCTTCACATTCGTAACCCCCCTTCCCCCACC
CCCACGCCATCCATGGTCTGTTTTGTCGATTTCTGCAGTCTGCGAGGCCC
CATGGACAGTCGGAGTCTTTCCACGGATACAAGGGATACCCTGGATACGA
GCCTGACACGCCGGTAGCTCAGCAATTGACTCAGCCGGTGAGTGGCATTA
CTGCTGTCAATCGACACGATTGATTAGCCTCTCCGTACTGCTGTATAGTG
TTCTCGTTGGCATGACTCTTTCTCGTTTGTTACTTAGTGTGTCCTTAACC
GCCGCGTTTGTTTAAATTGATTCTTCGGGACCCTTTTTTATTTTTCATTC
TGCATACCCTCGGGCTAGTTGCTACGTGTAGCCTGTGACGGCGGGAAGGG
GCCCGCGTCGGTTGGAGCAGTACTGCGGATGTTAAAAGGTACTGAACAGA
TTTCGGAATAGTTGTCTTCCAAGCTCCGATAGCAAACAGAACGTTCATTG
GGAAGTAGAAACAGAGAAAGCCCCTGGGAGACTACTTGTCCGCAAAATCG
ATACACACCCACGAAGAACGATCGTTTCGTTGCGTGACCCTCCATGATGT
GTTTTCCACCCACTATTAATAGATGCTTTTTCTGCACTGTTCGCGCCTTC
ACCCCACCTGATGCAATGATGCAACCTTGACCTTGACACGAACTGCTGGT
CGACGCGCTGCTGCTGTAGGGACGTGCCCACGCGACGGACACGCTCACCA
TCAACCCGGGGGCGGACGTGTCGGATCCCCGGACAAAACACGCCGGGGCT
GCCGGCCCGACCCCTTCCAGCGTCCGCTTCACACCGCGGGAGATGGAGGT
GTCGTCGGAGATAGGGTCGACTATGACCCCGGTTGGGCGAGAGCAGCAGC
AGCATTACCAGCAGCAGCAGTATCAGCAGGAGCAGGCGTTGGGCATGGAC
ATCGACGGCCGTGAGGATGACGTCGAGGTGAGGCTTGGCTGTGAAGGGGG
ACGTGAAAATTCCGAGCAGGGGGTGTTGTATTTCGAAACGGTTGGCCCGA
GCTGGTCTGTCGTAGGGGTTGCCAATGTTCGTAACACCACGAAGTAGAAA
CCCGCATGTTGAGATATTATAGTTGCAACTGCTTGTGTTGTTCCGGCTTG
GACCCGTATGCTGATTGGTCCATGCACATGGATCTACGATGACAGGAGCA
GCAACAGCAACAGCAACAGCAACAGCACCAGAGCCGACAGCGGCGGCGAC
AGCAGCGACAGTACCAGCAGCCGGTCATCTCCCCTTCCGGCACGACCAGC
ATGGAGATGGCCACAGGCTTGCGGCCTCCGGAGCCAAGGGGCCGCGCGGT
TCAGGCGGAGGTGGGTGGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7718:2892..7013+

>mRNA_Ecto-sp13_S_contig7718.18956.1 ID=mRNA_Ecto-sp13_S_contig7718.18956.1|Name=mRNA_Ecto-sp13_S_contig7718.18956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7718:2892..7013+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAGACCAACAAGGAACAGGCAGGGGGCCTCGCAAACCGTCACGTTATC
CTCCAAGCCTGGGTCCCAGCAGCAGCTTGCGGGAGGCAACGGAACCACAG
CAACCCCGAGCATTGCTTCCGAAGCGGCAGCACCGCGAGCGGCGGCAGCG
GCAGCGGCGGCGGATGCAGCAGCGGCGCCAGCGCCGACGGTCTCAGCATC
GACGCCTGCTGCGGCAGCACCGGCGGCGGCGGCGGCGGGAACTGAGCCAT
CGGCTGCGCCTGCACCGGCGCCTGCGGCGGCGGCAGCGGCAGCGGCTGTG
TCGAAGCCAGTCCCGAAGACGAAGTTCAGCAAGCGCGCGTCGAGGGGGCT
CAAGGCTGCCCCCGCCTACATGTCGTTCGACGATGTCGATGTCGAAGCAG
ACGATGACTCCGACGGCGAGCTGTTCGTTGAGGACTCGCGCGACAATCGC
GGCTCGGGCGCCGCCCGCTCCCCTGGAAGCGTCGCTGCGCAGGCCGCCTC
CTCCAAGTCGGCCTCCGCCTACACCGTCAACGCGCCGTCGGTGTACCGGG
CGCCGAGCCTCGCACCGCCAGCGGCAGCCGCCCCCGCGGCCCCGGCCTCG
AGCGACGCTCCGGCTGGGGGCCCCGAAGACCAGGAGGGGTACAGCGCTGC
GGCGGCGGGCAGAGGCGAGGACGATGGAAGTTCCGGGGTTCCGGTGGCGG
TGGTTTCGGCGAAGGAGAACATGTCGAGCCACCGGGCGATCGCGGGAGAT
TCGTCCGCGGAGATATGGTCGAGCGGGAGCGGGCTCAGGGGGGGGCTGGC
GGGGGGCCTGCGACTGGGAGGGGAGCAGCGCGTGATGTCTATCCCGAGGG
ACGGGAGCATGCTGGAGTCTGCGAGGCCCCATGGACAGTCGGAGTCTTTC
CACGGATACAAGGGATACCCTGGATACGAGCCTGACACGCCGGTAGCTCA
GCAATTGACTCAGCCGGGACGTGCCCACGCGACGGACACGCTCACCATCA
ACCCGGGGGCGGACGTGTCGGATCCCCGGACAAAACACGCCGGGGCTGCC
GGCCCGACCCCTTCCAGCGTCCGCTTCACACCGCGGGAGATGGAGGTGTC
GTCGGAGATAGGGTCGACTATGACCCCGGTTGGGCGAGAGCAGCAGCAGC
ATTACCAGCAGCAGCAGTATCAGCAGGAGCAGGCGTTGGGCATGGACATC
GACGGCCGTGAGGATGACGTCGAGGAGCAGCAACAGCAACAGCAACAGCA
ACAGCACCAGAGCCGACAGCGGCGGCGACAGCAGCGACAGTACCAGCAGC
CGGTCATCTCCCCTTCCGGCACGACCAGCATGGAGATGGCCACAGGCTTG
CGGCCTCCGGAGCCAAGGGGCCGCGCGGTTCAGGCGGAGGTGGGTGGTTG
A
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