mRNA_Ecto-sp13_S_contig77139.18953.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77139.18953.1
Unique NamemRNA_Ecto-sp13_S_contig77139.18953.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig77139.18953.1 vs. uniprot
Match: A0A1I5NQ94_9RHOB (VWFA domain-containing protein n=1 Tax=Tranquillimonas alkanivorans TaxID=441119 RepID=A0A1I5NQ94_9RHOB)

HSP 1 Score: 57.0 bits (136), Expect = 2.320e-8
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1
Query:   34 DGRLVENVVHFARALRKAGIRVGTAQVET 120
            DGRLVEN+VHF RALRKAG+RVGTAQVET
Sbjct:    6 DGRLVENIVHFGRALRKAGLRVGTAQVET 34          
BLAST of mRNA_Ecto-sp13_S_contig77139.18953.1 vs. uniprot
Match: A0A2T0RRN7_9RHOB (Uncharacterized protein n=1 Tax=Aliiruegeria haliotis TaxID=1280846 RepID=A0A2T0RRN7_9RHOB)

HSP 1 Score: 57.0 bits (136), Expect = 2.320e-8
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    1 MAQPTRHLSDLDGRLVENVVHFARALRKAGIRVGTAQVET 120
            MA P R L   DGRLVEN+VHF+RALRKAG++VG AQVE+
Sbjct:    1 MAAP-RRLDQTDGRLVENIVHFSRALRKAGVKVGPAQVES 39          
BLAST of mRNA_Ecto-sp13_S_contig77139.18953.1 vs. uniprot
Match: A0A553AUH8_9RHOB (VWA domain-containing protein n=1 Tax=Paracoccus sp. M683 TaxID=2594268 RepID=A0A553AUH8_9RHOB)

HSP 1 Score: 56.6 bits (135), Expect = 3.180e-8
Identity = 25/29 (86.21%), Postives = 29/29 (100.00%), Query Frame = 1
Query:   34 DGRLVENVVHFARALRKAGIRVGTAQVET 120
            DGRLVEN+VHFARALRKAG+++GTAQVET
Sbjct:   11 DGRLVENIVHFARALRKAGVKLGTAQVET 39          
BLAST of mRNA_Ecto-sp13_S_contig77139.18953.1 vs. uniprot
Match: A0A239C2I7_9RHOB (Uncharacterized protein n=1 Tax=Tropicimonas sediminicola TaxID=1031541 RepID=A0A239C2I7_9RHOB)

HSP 1 Score: 56.2 bits (134), Expect = 4.350e-8
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1
Query:   16 RHLSDLDGRLVENVVHFARALRKAGIRVGTAQVE 117
            R   ++DGRLVEN+VHF RALRKAG++VGTAQVE
Sbjct:    5 RRPGEVDGRLVENIVHFTRALRKAGVKVGTAQVE 38          
BLAST of mRNA_Ecto-sp13_S_contig77139.18953.1 vs. uniprot
Match: A0A2H5F3Q0_9RHOB (VWA domain-containing protein n=1 Tax=Paracoccus zhejiangensis TaxID=1077935 RepID=A0A2H5F3Q0_9RHOB)

HSP 1 Score: 55.8 bits (133), Expect = 5.940e-8
Identity = 25/29 (86.21%), Postives = 29/29 (100.00%), Query Frame = 1
Query:   34 DGRLVENVVHFARALRKAGIRVGTAQVET 120
            DGRLVEN+VHFARALRKAG+++GTAQVET
Sbjct:    5 DGRLVENIVHFARALRKAGMKLGTAQVET 33          
BLAST of mRNA_Ecto-sp13_S_contig77139.18953.1 vs. uniprot
Match: A0A3S2V2L4_9RHOB (VWA domain-containing protein n=1 Tax=Rhodobacteraceae bacterium CCMM004 TaxID=2499834 RepID=A0A3S2V2L4_9RHOB)

HSP 1 Score: 55.5 bits (132), Expect = 8.130e-8
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1
Query:   22 LSDLDGRLVENVVHFARALRKAGIRVGTAQVE 117
            L   DGRL ENVVHFARALR+AG+RVGTAQVE
Sbjct:    7 LPQTDGRLTENVVHFARALRRAGVRVGTAQVE 38          
BLAST of mRNA_Ecto-sp13_S_contig77139.18953.1 vs. uniprot
Match: A0A369R044_9RHOB (VWA domain-containing protein n=1 Tax=Rhodovulum sp. 12E13 TaxID=2203891 RepID=A0A369R044_9RHOB)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-7
Identity = 25/29 (86.21%), Postives = 28/29 (96.55%), Query Frame = 1
Query:   34 DGRLVENVVHFARALRKAGIRVGTAQVET 120
            +GRLVEN+VHFARALRKAG+RVG AQVET
Sbjct:   14 EGRLVENIVHFARALRKAGVRVGPAQVET 42          
BLAST of mRNA_Ecto-sp13_S_contig77139.18953.1 vs. uniprot
Match: A0A7X6GY66_9RHOB (VWA domain-containing protein n=1 Tax=Roseibacterium persicicum TaxID=2650661 RepID=A0A7X6GY66_9RHOB)

HSP 1 Score: 54.3 bits (129), Expect = 2.080e-7
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1
Query:   10 PTRHLSDLDGRLVENVVHFARALRKAGIRVGTAQVET 120
            P R L +  GRL EN+VHFARALRKAG+RVG AQV++
Sbjct:    3 PPRPLPETAGRLAENIVHFARALRKAGVRVGPAQVQS 39          
BLAST of mRNA_Ecto-sp13_S_contig77139.18953.1 vs. uniprot
Match: A0A8I1IHJ7_9RHOB (VWA domain-containing protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A8I1IHJ7_9RHOB)

HSP 1 Score: 53.9 bits (128), Expect = 2.840e-7
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1
Query:   16 RHLSDLDGRLVENVVHFARALRKAGIRVGTAQVE 117
            R L + DGRL EN+VHF RALR AG+R+GTAQVE
Sbjct:    5 RPLPETDGRLTENIVHFTRALRAAGVRIGTAQVE 38          
BLAST of mRNA_Ecto-sp13_S_contig77139.18953.1 vs. uniprot
Match: A0A0P7Y6H3_9RHOB (Protein containing von Willebrand factor type A (VWA) domain n=1 Tax=Rhodobacteraceae bacterium HLUCCO18 TaxID=1666917 RepID=A0A0P7Y6H3_9RHOB)

HSP 1 Score: 53.5 bits (127), Expect = 3.890e-7
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 1
Query:   28 DLDGRLVENVVHFARALRKAGIRVGTAQVET 120
            D +GRLVEN++HF  ALRKAG++VGTAQVET
Sbjct:    8 DAEGRLVENILHFTHALRKAGVKVGTAQVET 38          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77139.18953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A1I5NQ94_9RHOB2.320e-889.66VWFA domain-containing protein n=1 Tax=Tranquillim... [more]
A0A2T0RRN7_9RHOB2.320e-870.00Uncharacterized protein n=1 Tax=Aliiruegeria halio... [more]
A0A553AUH8_9RHOB3.180e-886.21VWA domain-containing protein n=1 Tax=Paracoccus s... [more]
A0A239C2I7_9RHOB4.350e-873.53Uncharacterized protein n=1 Tax=Tropicimonas sedim... [more]
A0A2H5F3Q0_9RHOB5.940e-886.21VWA domain-containing protein n=1 Tax=Paracoccus z... [more]
A0A3S2V2L4_9RHOB8.130e-881.25VWA domain-containing protein n=1 Tax=Rhodobactera... [more]
A0A369R044_9RHOB1.110e-786.21VWA domain-containing protein n=1 Tax=Rhodovulum s... [more]
A0A7X6GY66_9RHOB2.080e-767.57VWA domain-containing protein n=1 Tax=Roseibacteri... [more]
A0A8I1IHJ7_9RHOB2.840e-770.59VWA domain-containing protein n=1 Tax=Rhodobactera... [more]
A0A0P7Y6H3_9RHOB3.890e-774.19Protein containing von Willebrand factor type A (V... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77139contigEcto-sp13_S_contig77139:2..121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size120
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size120
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464042.5058088-CDS-Ecto-sp13_S_contig77139:1..1211681464042.5058088-CDS-Ecto-sp13_S_contig77139:1..121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77139 2..121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77139.18953.1prot_Ecto-sp13_S_contig77139.18953.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77139 2..121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77139.18953.1

>prot_Ecto-sp13_S_contig77139.18953.1 ID=prot_Ecto-sp13_S_contig77139.18953.1|Name=mRNA_Ecto-sp13_S_contig77139.18953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp
MAQPTRHLSDLDGRLVENVVHFARALRKAGIRVGTAQVET
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mRNA from alignment at Ecto-sp13_S_contig77139:2..121-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77139.18953.1 ID=mRNA_Ecto-sp13_S_contig77139.18953.1|Name=mRNA_Ecto-sp13_S_contig77139.18953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77139:2..121- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCAGCCCACCCGCCACCTGTCTGATCTTGATGGGCGTTTGGTGGA AAATGTCGTCCACTTTGCCCGCGCGTTGCGCAAGGCGGGCATTCGCGTTG GCACAGCCCAAGTGGAAACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77139:2..121-

>mRNA_Ecto-sp13_S_contig77139.18953.1 ID=mRNA_Ecto-sp13_S_contig77139.18953.1|Name=mRNA_Ecto-sp13_S_contig77139.18953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77139:2..121- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCAGCCCACCCGCCACCTGTCTGATCTTGATGGGCGTTTGGTGGA
AAATGTCGTCCACTTTGCCCGCGCGTTGCGCAAGGCGGGCATTCGCGTTG
GCACAGCCCAAGTGGAAACC
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