mRNA_Ecto-sp13_S_contig7708.18946.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7708.18946.1
Unique NamemRNA_Ecto-sp13_S_contig7708.18946.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7708.18946.1 vs. uniprot
Match: A0A6H5K5S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S2_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 5.430e-6
Identity = 32/56 (57.14%), Postives = 35/56 (62.50%), Query Frame = -3 
Query:  190 GCDCYPNDG*DREKLSHLWHGRKERLAIGDRSSCGNTASFSLGRVVKGLKALACQT 357
            G D    D   +  L+HLW  RKERLAIGDRSS GN A  S GRVV G  A AC+T
Sbjct:  296 GRDIVRIDRLGKTILNHLWQSRKERLAIGDRSS-GNNAPSSRGRVVIGPTAKACKT 350
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BLAST of mRNA_Ecto-sp13_S_contig7708.18946.1 vs. uniprot
Match: A0A6H5K227_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K227_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 3.620e-5
Identity = 28/49 (57.14%), Postives = 31/49 (63.27%), Query Frame = -3 
Query:  211 GCDCYPNDG*DREKLSHLWHGRKERLAIGDRSSCGNTASFSLGRVVKGL 357
            G D    D   +  LSHLWH R+E LAIGDRS CG+ A  S GRVV GL
Sbjct:  355 GRDIVRIDRLGKTLLSHLWHSRREHLAIGDRS-CGSNAPSSRGRVVNGL 402
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7708.18946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5S2_9PHAE5.430e-657.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K227_9PHAE3.620e-557.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7708contigEcto-sp13_S_contig7708:6064..6521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size458
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464041.8397985-UTR-Ecto-sp13_S_contig7708:6063..60751681464041.8397985-UTR-Ecto-sp13_S_contig7708:6063..6075Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7708 6064..6075 +
1681464041.8625395-UTR-Ecto-sp13_S_contig7708:6378..65211681464041.8625395-UTR-Ecto-sp13_S_contig7708:6378..6521Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7708 6379..6521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464041.8521707-CDS-Ecto-sp13_S_contig7708:6075..63781681464041.8521707-CDS-Ecto-sp13_S_contig7708:6075..6378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7708 6076..6378 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7708.18946.1prot_Ecto-sp13_S_contig7708.18946.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7708 6076..6378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7708.18946.1

>prot_Ecto-sp13_S_contig7708.18946.1 ID=prot_Ecto-sp13_S_contig7708.18946.1|Name=mRNA_Ecto-sp13_S_contig7708.18946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MYTKWSWIGSCSVEASSLFRHQGHKVGRRKGFFFAFVFGRFAARRKETDS
RGRFSQVYSGLARKGLKTLDHASQRERSSVPAGRSITDGQSFLPTMPQVT
*
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mRNA from alignment at Ecto-sp13_S_contig7708:6064..6521+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7708.18946.1 ID=mRNA_Ecto-sp13_S_contig7708.18946.1|Name=mRNA_Ecto-sp13_S_contig7708.18946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=458bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7708:6064..6521+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGGATAAACATGTACACAAAATGGTCTTGGATCGGGTCTTGCTCGGT
GGAAGCGTCATCACTATTCCGACATCAAGGGCATAAAGTGGGCCGAAGGA
AGGGTTTCTTTTTCGCCTTCGTCTTCGGACGATTTGCCGCGCGTCGCAAA
GAGACGGATAGCAGAGGGAGGTTTAGTCAAGTCTACTCGGGTTTGGCACG
CAAGGGCCTTAAGACCCTTGACCACGCGTCCCAAAGAGAACGAAGCAGTG
TTCCCGCAGGAAGATCGATCACCGATGGCCAATCGTTCCTTCCTACCATG
CCACAGGTGACTTAATTTTTCCCTATCCTATCCATCATTAGGATAACAAT
CACAGCCTTTCAGCCCACCACTCTTTAGCAAGTTTATTCAAGTGGGATGG
GAGGGGGGGTCGCTCATTACCGTGCATGTGCCGTAGTTGGCACACGATGG
ACTTTGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7708:6064..6521+

>mRNA_Ecto-sp13_S_contig7708.18946.1 ID=mRNA_Ecto-sp13_S_contig7708.18946.1|Name=mRNA_Ecto-sp13_S_contig7708.18946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7708:6064..6521+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACACAAAATGGTCTTGGATCGGGTCTTGCTCGGTGGAAGCGTCATC
ACTATTCCGACATCAAGGGCATAAAGTGGGCCGAAGGAAGGGTTTCTTTT
TCGCCTTCGTCTTCGGACGATTTGCCGCGCGTCGCAAAGAGACGGATAGC
AGAGGGAGGTTTAGTCAAGTCTACTCGGGTTTGGCACGCAAGGGCCTTAA
GACCCTTGACCACGCGTCCCAAAGAGAACGAAGCAGTGTTCCCGCAGGAA
GATCGATCACCGATGGCCAATCGTTCCTTCCTACCATGCCACAGGTGACT
TAA
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