mRNA_Ecto-sp13_S_contig7706.18945.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7706.18945.1
Unique NamemRNA_Ecto-sp13_S_contig7706.18945.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7706.18945.1 vs. uniprot
Match: D8LK00_ECTSI (DEK C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK00_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.210e-47
Identity = 115/154 (74.68%), Postives = 120/154 (77.92%), Query Frame = 2 
Query:    2 ENQGPMDKSLLEAIRGIPGEVEDIGKLTSKQVIAMLEKRFSCSLENRKKFIKAELVEVVQTALGDGESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDHDSEQEGQKKQQPTSDQDSSDNGLESPLSDDAGELADMPVMPRP 463
            E QGP D+SLLEAIRGIPGEVEDIGKLT+KQVIAMLEKRFSCSLE+RKKFIKAELVEVVQ ALGDGES XXXXXXXXXX          XX                 LD +S+QEGQKKQQPTSDQDSSDNGLES LSDDAGEL DMPVMPRP
Sbjct:  162 EKQGPTDESLLEAIRGIPGEVEDIGKLTAKQVIAMLEKRFSCSLEHRKKFIKAELVEVVQAALGDGESSXXXXXXXXXXVGEASEGEQQXXSSSPEDSDDEATAA---LDKESDQEGQKKQQPTSDQDSSDNGLESSLSDDAGELEDMPVMPRP 312
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BLAST of mRNA_Ecto-sp13_S_contig7706.18945.1 vs. uniprot
Match: A0A6H5KTL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL5_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.570e-42
Identity = 119/177 (67.23%), Postives = 126/177 (71.19%), Query Frame = 2 
Query:    2 ENQGPMDKSLLEAIRGIPGEVEDIGKLTSKQVIAMLEKRFSCSLENRKKFIKAELVEVVQTALGDGESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------LDHDSEQEGQKKQQPTSDQDSSDNGLESPLSDDAGELADMPVMPRP 463
            ENQGP D+SLLEA+RG+PG+VE +GKLT KQVIAMLEKRFSCSLE+RKKFIKAEL EVVQ ALGD   XXXXXX              XXXXXXXXXXXXXXX                            LDHDSEQ+GQKKQQPTSDQDSSDNGLES LSDDAGELADMPVMPRP
Sbjct:  169 ENQGPTDESLLEAMRGVPGDVEGVGKLTPKQVIAMLEKRFSCSLEHRKKFIKAELAEVVQAALGDXXXXXXXXXGSFLRLPPTASLSSXXXXXXXXXXXXXXXSDCGDASEGEQQKASXXPEDSDHEATAALDHDSEQDGQKKQQPTSDQDSSDNGLESSLSDDAGELADMPVMPRP 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7706.18945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LK00_ECTSI1.210e-4774.68DEK C-terminal domain-containing protein n=1 Tax=E... [more]
A0A6H5KTL5_9PHAE1.570e-4267.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7706contigEcto-sp13_S_contig7706:1186..1926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score169.9
Seed ortholog evalue9.2e-40
Seed eggNOG ortholog2880.D8LK00
Model size463
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28NH7@1,2QV2P@2759
Cds size447
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464041.774538-CDS-Ecto-sp13_S_contig7706:1185..15541681464041.774538-CDS-Ecto-sp13_S_contig7706:1185..1554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7706 1186..1554 -
1681464041.7873838-CDS-Ecto-sp13_S_contig7706:1832..19101681464041.7873838-CDS-Ecto-sp13_S_contig7706:1832..1910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7706 1833..1910 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464041.8006063-UTR-Ecto-sp13_S_contig7706:1910..19261681464041.8006063-UTR-Ecto-sp13_S_contig7706:1910..1926Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7706 1911..1926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7706.18945.1prot_Ecto-sp13_S_contig7706.18945.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7706 1186..1910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7706.18945.1

>prot_Ecto-sp13_S_contig7706.18945.1 ID=prot_Ecto-sp13_S_contig7706.18945.1|Name=mRNA_Ecto-sp13_S_contig7706.18945.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MDKSLLEAIRGIPGEVEDIGKLTSKQVIAMLEKRFSCSLENRKKFIKAEL
VEVVQTALGDGESSSSSSSSSAASDSDGGDASKGEQQEVSSSPEDSDEEA
TAALDHDSEQEGQKKQQPTSDQDSSDNGLESPLSDDAGELADMPVMPRP
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mRNA from alignment at Ecto-sp13_S_contig7706:1186..1926-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7706.18945.1 ID=mRNA_Ecto-sp13_S_contig7706.18945.1|Name=mRNA_Ecto-sp13_S_contig7706.18945.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7706:1186..1926- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAAATCAAGGCCCCATGGATAAGAGTCTCCTGGAGGCGATTCGTGGTA
TTCCTGGCGAGGTGGAGGATATTGGGAAGCTCACTTCCAAGCAGGTGAAA
GACAGCATTAAATCTTTCCTTGTTCGATTTGGTGCACGACTTGACAGCCG
AACGCCAAGCCGCCTCGCCACATAGATAAGTCGTTTGCGCTTGCTGCTCT
TGTCCTTGCGTGGGCCTTGGACAGAAAAGTGGGTGTGGTGAATGCTCCCG
TGTGGCGTCATCTTCGAGTCTGCCACTGACAGGTATTGCAGGACACGCCC
AAGCCCACCCACGGCGGCTACTGTATCGTCCCTTCCTCCCTCGTTCCTCT
TCCGCGCCCGACGATCGATCAGGTGATCGCCATGCTCGAGAAACGGTTCT
CGTGCTCGCTGGAGAACCGCAAGAAGTTCATCAAGGCGGAGCTCGTGGAG
GTCGTGCAAACTGCTCTAGGCGACGGCGAATCCTCCTCTTCCTCCTCCTC
CTCGTCTGCTGCCTCAGACAGCGATGGCGGTGATGCCAGCAAGGGCGAAC
AGCAAGAGGTGTCGTCTTCGCCCGAAGATTCCGACGAAGAGGCGACGGCT
GCTCTCGACCACGACTCCGAACAAGAAGGGCAGAAGAAGCAGCAGCCGAC
GTCCGACCAAGATAGTAGTGACAACGGACTGGAGTCGCCCTTGTCCGACG
ATGCCGGCGAACTGGCGGACATGCCGGTGATGCCCCGCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7706:1186..1926-

>mRNA_Ecto-sp13_S_contig7706.18945.1 ID=mRNA_Ecto-sp13_S_contig7706.18945.1|Name=mRNA_Ecto-sp13_S_contig7706.18945.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7706:1186..1926- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATAAGAGTCTCCTGGAGGCGATTCGTGGTATTCCTGGCGAGGTGGA
GGATATTGGGAAGCTCACTTCCAAGCAGGTGATCGCCATGCTCGAGAAAC
GGTTCTCGTGCTCGCTGGAGAACCGCAAGAAGTTCATCAAGGCGGAGCTC
GTGGAGGTCGTGCAAACTGCTCTAGGCGACGGCGAATCCTCCTCTTCCTC
CTCCTCCTCGTCTGCTGCCTCAGACAGCGATGGCGGTGATGCCAGCAAGG
GCGAACAGCAAGAGGTGTCGTCTTCGCCCGAAGATTCCGACGAAGAGGCG
ACGGCTGCTCTCGACCACGACTCCGAACAAGAAGGGCAGAAGAAGCAGCA
GCCGACGTCCGACCAAGATAGTAGTGACAACGGACTGGAGTCGCCCTTGT
CCGACGATGCCGGCGAACTGGCGGACATGCCGGTGATGCCCCGCCCC
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