mRNA_Ecto-sp13_S_contig7703.18944.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7703.18944.1
Unique NamemRNA_Ecto-sp13_S_contig7703.18944.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7703.18944.1 vs. uniprot
Match: A0A6H5JI81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI81_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 2.440e-112
Identity = 210/261 (80.46%), Postives = 217/261 (83.14%), Query Frame = 3 
Query:  279 MLDSRDPAGLVNARASVCILPSRDTQDLKDARPS-ARTPGRGATDVKTGGVCRGGVCGSGNGVDRHRRLPCGSASSSTFLLVICMLLPHAANGFVPGPSPSLRRQPRGHDGLRSGGRAGLPSATLGASSSSTARRAAFSAHPAGSACRATFSYCQISSRHSCQSSLSMSWCSSGGYQQRRXXRLSRLAPASAAAEGAPESTGISGSTAAASGGRNRLSAVRLATGRVLRGVVAAALRAATPARCRRAAGGVLVSAAAFCVL 1058
            MLDSR+ AGLV+ARASVCILPSR+TQ  KDARP   R PGRGATDV TG +CRGGVCGSGNGVDRH RLPCGSASSSTFLLVI MLLPHA NGFVP PSPSLRRQPRGHDGLRSGGRAGLPSATLGASSS  ARR  FSA PAGS  RATFS C  SSRHS QSS+ MS C+SG      XX           AEGAPESTGISGSTAAA+GGRNRLSAVRLATGRV RGVVAAALRAATPARCRRAAGGVLVSAAAFCVL
Sbjct:    1 MLDSREAAGLVDARASVCILPSRNTQGPKDARPRRVRAPGRGATDVSTGSICRGGVCGSGNGVDRHCRLPCGSASSSTFLLVIYMLLPHAVNGFVPVPSPSLRRQPRGHDGLRSGGRAGLPSATLGASSS--ARRVPFSAPPAGSDGRATFSDCHTSSRHSYQSSIPMSSCTSGXXXXXXXXXXXXXXXXXXXAEGAPESTGISGSTAAAAGGRNRLSAVRLATGRVFRGVVAAALRAATPARCRRAAGGVLVSAAAFCVL 259
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BLAST of mRNA_Ecto-sp13_S_contig7703.18944.1 vs. uniprot
Match: D7FIB4_ECTSI (Hemolysin-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIB4_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 7.670e-31
Identity = 82/94 (87.23%), Postives = 85/94 (90.43%), Query Frame = 3 
Query:  777 MSWCSSGGYQQRRXXRLSRLAPASAAAEGAPESTGISGSTAAASGGRNRLSAVRLATGRVLRGVVAAALRAATPARCRRAAGGVLVSAAAFCVL 1058
            MS C+SG      XX LSRLAPASAAAEGAPESTGISGSTAAASGGRN+LSAVRLATGRV+RGVVAAALRAATPARCRRA GGVLVSAAAFCVL
Sbjct:    1 MSSCASGXXXXXXXXXLSRLAPASAAAEGAPESTGISGSTAAASGGRNQLSAVRLATGRVVRGVVAAALRAATPARCRRAVGGVLVSAAAFCVL 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7703.18944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI81_9PHAE2.440e-11280.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIB4_ECTSI7.670e-3187.23Hemolysin-related protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7703contigEcto-sp13_S_contig7703:2000..4423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score132.5
Seed ortholog evalue2.9e-28
Seed eggNOG ortholog2880.D7FIB4
Model size1058
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons3
EggNOG free text desc.magnesium ion homeostasis
EggNOG OGsCOG1253@1,KOG2118@2759
Ec32 ortholog descriptionTransporter-associated domain
Ec32 orthologEc-11_001260.1
Cds size780
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464041.6919923-CDS-Ecto-sp13_S_contig7703:1999..27791681464041.6919923-CDS-Ecto-sp13_S_contig7703:1999..2779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7703 2000..2779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464041.708279-UTR-Ecto-sp13_S_contig7703:2779..28441681464041.708279-UTR-Ecto-sp13_S_contig7703:2779..2844Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7703 2780..2844 -
1681464041.7223895-UTR-Ecto-sp13_S_contig7703:4199..43771681464041.7223895-UTR-Ecto-sp13_S_contig7703:4199..4377Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7703 4200..4377 -
1681464041.7377048-UTR-Ecto-sp13_S_contig7703:4388..44231681464041.7377048-UTR-Ecto-sp13_S_contig7703:4388..4423Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7703 4389..4423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7703.18944.1prot_Ecto-sp13_S_contig7703.18944.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7703 2000..2779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7703.18944.1

>prot_Ecto-sp13_S_contig7703.18944.1 ID=prot_Ecto-sp13_S_contig7703.18944.1|Name=mRNA_Ecto-sp13_S_contig7703.18944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
MLDSRDPAGLVNARASVCILPSRDTQDLKDARPSARTPGRGATDVKTGGV
CRGGVCGSGNGVDRHRRLPCGSASSSTFLLVICMLLPHAANGFVPGPSPS
LRRQPRGHDGLRSGGRAGLPSATLGASSSSTARRAAFSAHPAGSACRATF
SYCQISSRHSCQSSLSMSWCSSGGYQQRRRRRLSRLAPASAAAEGAPEST
GISGSTAAASGGRNRLSAVRLATGRVLRGVVAAALRAATPARCRRAAGGV
LVSAAAFCVL
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mRNA from alignment at Ecto-sp13_S_contig7703:2000..4423-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7703.18944.1 ID=mRNA_Ecto-sp13_S_contig7703.18944.1|Name=mRNA_Ecto-sp13_S_contig7703.18944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7703:2000..4423- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGAGGCAGAGCAGAGACAGGCCTTGTAATGACCGTGAACAGCAGTGAA
CGATTGGAACGATCAAACGGGGGCATCGCCAACAGGAGCATTGTATGGAG
AGGGGGGTGCGAAATATCAACACAGCTGGCTAGTGTAGTCCGACGGTCCG
AGAACATCAAGCCACCTACCAACAAAAAAGGAGCAGCCAGAAGCAACCAG
ACACGGGGCACACATCGCAGCCAGGTACGCTTTGAAGCGAGGCGTGAGAT
GTTTTGTTGCGTTATATGGGGCACTTGTTGGTGCTGCGATCTTGTGGAAC
TATTTAACAGCTGCAGTTTTTTGGTGCATGTTGCCGCACGAAAACAGAGT
GACGTTGTGTAGCACTTTTCATTGCAATGGGTTGGCAGGTACACCGCGCA
GTACCCTTTCCTCTCCAAATACCCAGCAGGGCACCCAGCCGTGCAGGACC
TTAGCTCTATCGCACAATGCGCGCTGATCTGCCAATATCACAGGGAGGAT
CTGTAGAATACAAGTCCGTTCAATACCGGCCACCAAGTAGGCAAGCTACT
GCTGTAGACACGTGCCGAGAGCTGGTTGTTCCTTTGCATCTATGTACATA
TGTTCAGGTACTCTGGTGTTGCAGGAACTCTCGAGTGCTCTTATCACTGC
TGTATCATTGTTGTATCACTGCACACGTATACGAGCAAAGGGGCTTGACT
GGCACTGATTTCCACCCTTCGGATCCTGTTGCTCATGCACATAGGTTCTT
CCTTCGATTTTGGCTGTCCTTACCGCATGTCGAAGCGGACACACGTTGTG
CTGGGCTGAGGCGGCGATTGTTCCTTCTAGATGCACACATGACACATGCC
TCAAGAGCCAACAGATGCATGTGTATGTAGCACACGGACACCTTTACGCC
TTTACCTGCTGCGCACGTGTGCAACGGCGAGCACGGAAATGAAGGCGGCG
GCAGCTGCAGCGGCAGATGGATCAACCCTACTGCAGCAATCAGCAATCTC
CAAATGCCGGAGCATGCCCTCTATGTTAGAGGGTGTTGGTCTACACGTCG
ACACCCTCGGTACGCCGAGCCGAGGGTTTGTTGCTCGTCGCTTGTACCCA
CTACACTGCTATCGACAATTGCATGCGGCTTTCGCTCGTGTGCATACTGA
GAACGAAGATAGGATAGCTGTCGCTACAACGAGCGACAGCTGATAGGTGT
AACTATCGTCAGACGTACGCGTCCGCGGGCGGAAACAGAGCGCAAAAACC
ACAAACTTGATACTACACCTGCTGTGCGCTGGTGAGAGAGTTGTTGAATA
TTATTATAGTAAATAGTTGGAGGCACGCAACCGTAGTGTATGTAAGCCAA
ACGACAAACTGGATGATTCAACATGTGCAAACTTTGCACTTCCTGGATCG
GCCATCGCTCGAGAATTTAACCCTGCACTCGAATGTCTAGACAACCAAGC
ACAGCAGTAGCAGCTATGCCCTACTGTATGGTCTCGGTATTTCTCTCGTG
TCTTCCCTTTGGACTTGATTGCAAAACTTGAGGAGCGTCATCTCCTTCGC
CCTTTTCCGCCGTTCTTTTCCCGTCCCAGCTCCGCAATCAAGCAGGATCA
AGACGCGACGGGAGACAACTCGTCAGGCAGCGCAGGGTCGACTTATGCTC
GACTCGCGAGACCCCGCTGGCCTGGTAAATGCTCGCGCCTCTGTCTGCAT
TCTGCCGTCAAGGGACACGCAGGACCTAAAGGATGCTCGCCCAAGTGCGC
GCACACCAGGAAGGGGAGCAACGGATGTGAAGACGGGAGGCGTTTGCCGT
GGGGGGGTATGCGGGAGCGGGAACGGTGTCGACAGACATCGCCGATTACC
ATGCGGCTCGGCGTCCTCCTCGACTTTCCTGCTGGTGATATGTATGCTGC
TGCCGCACGCTGCAAACGGGTTTGTTCCCGGTCCCAGCCCTTCGCTGCGG
CGACAGCCGCGAGGGCATGACGGCCTCCGCAGCGGGGGTAGGGCCGGCTT
GCCGTCCGCAACGCTTGGGGCGTCATCATCATCGACCGCGCGAAGAGCGG
CTTTTTCGGCACACCCCGCCGGTAGCGCTTGCCGCGCTACTTTCAGCTAT
TGCCAAATTAGTAGCCGGCACTCCTGCCAGTCATCACTGTCAATGTCTTG
GTGTTCCTCGGGCGGCTACCAACAACGCCGCCGCCGTCGCCTCTCACGCT
TGGCTCCAGCATCAGCGGCAGCAGAGGGCGCCCCCGAGTCCACCGGCATC
AGTGGAAGCACGGCCGCCGCCTCCGGGGGGCGAAATCGGCTGAGCGCCGT
TAGACTCGCAACGGGTAGGGTTCTTAGAGGCGTGGTAGCGGCAGCGCTTC
GGGCGGCGACGCCCGCGCGCTGTCGGCGCGCCGCAGGCGGCGTGCTGGTG
TCGGCCGCGGCGTTTTGTGTTCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7703:2000..4423-

>mRNA_Ecto-sp13_S_contig7703.18944.1 ID=mRNA_Ecto-sp13_S_contig7703.18944.1|Name=mRNA_Ecto-sp13_S_contig7703.18944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7703:2000..4423- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGACTCGCGAGACCCCGCTGGCCTGGTAAATGCTCGCGCCTCTGT
CTGCATTCTGCCGTCAAGGGACACGCAGGACCTAAAGGATGCTCGCCCAA
GTGCGCGCACACCAGGAAGGGGAGCAACGGATGTGAAGACGGGAGGCGTT
TGCCGTGGGGGGGTATGCGGGAGCGGGAACGGTGTCGACAGACATCGCCG
ATTACCATGCGGCTCGGCGTCCTCCTCGACTTTCCTGCTGGTGATATGTA
TGCTGCTGCCGCACGCTGCAAACGGGTTTGTTCCCGGTCCCAGCCCTTCG
CTGCGGCGACAGCCGCGAGGGCATGACGGCCTCCGCAGCGGGGGTAGGGC
CGGCTTGCCGTCCGCAACGCTTGGGGCGTCATCATCATCGACCGCGCGAA
GAGCGGCTTTTTCGGCACACCCCGCCGGTAGCGCTTGCCGCGCTACTTTC
AGCTATTGCCAAATTAGTAGCCGGCACTCCTGCCAGTCATCACTGTCAAT
GTCTTGGTGTTCCTCGGGCGGCTACCAACAACGCCGCCGCCGTCGCCTCT
CACGCTTGGCTCCAGCATCAGCGGCAGCAGAGGGCGCCCCCGAGTCCACC
GGCATCAGTGGAAGCACGGCCGCCGCCTCCGGGGGGCGAAATCGGCTGAG
CGCCGTTAGACTCGCAACGGGTAGGGTTCTTAGAGGCGTGGTAGCGGCAG
CGCTTCGGGCGGCGACGCCCGCGCGCTGTCGGCGCGCCGCAGGCGGCGTG
CTGGTGTCGGCCGCGGCGTTTTGTGTTCTC
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