mRNA_Ecto-sp13_S_contig77013.18942.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77013.18942.1
Unique NamemRNA_Ecto-sp13_S_contig77013.18942.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77013.18942.1 vs. uniprot
Match: Q8QNA2_ESV1K (EsV-1-186 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNA2_ESV1K)

HSP 1 Score: 224 bits (572), Expect = 7.520e-68
Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 1 
Query:    1 MFPCVGRILGGFIAQYIGVLASIKVFASPGGTIFWWTQTAIAIAAMLHTPDTHWPERVGHIASSMLTYIPFRFRKFPVPLLLAICASNCMGQFFGYVSMKHFYPVMSPKEVGT 339
            M PCVGRILGGFIAQYIGVL S++VF SPGGTIFWWTQTAIAIAAMLHT DTHWPERVGHIASSMLTYIPFRFRKFPVPLLLAICASN +GQFFGYVSMKHFYPV+SPKEVGT
Sbjct:    1 MLPCVGRILGGFIAQYIGVLVSMEVFVSPGGTIFWWTQTAIAIAAMLHTSDTHWPERVGHIASSMLTYIPFRFRKFPVPLLLAICASNALGQFFGYVSMKHFYPVLSPKEVGT 113
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BLAST of mRNA_Ecto-sp13_S_contig77013.18942.1 vs. uniprot
Match: D8LPK5_ECTSI (Histidine kinase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPK5_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 4.200e-66
Identity = 103/113 (91.15%), Postives = 106/113 (93.81%), Query Frame = 1 
Query:    1 MFPCVGRILGGFIAQYIGVLASIKVFASPGGTIFWWTQTAIAIAAMLHTPDTHWPERVGHIASSMLTYIPFRFRKFPVPLLLAICASNCMGQFFGYVSMKHFYPVMSPKEVGT 339
            MF C+GRILGGFIAQYIGVL SIKVFASPGGTIFWWTQTAIAIAAMLHTPD HWPERVGHIASS LTYIPFRFRKFPVPLL AICASN MGQFFGYVSMKHF+PV+S KEVGT
Sbjct:    1 MFACLGRILGGFIAQYIGVLVSIKVFASPGGTIFWWTQTAIAIAAMLHTPDPHWPERVGHIASSTLTYIPFRFRKFPVPLLFAICASNSMGQFFGYVSMKHFFPVLSQKEVGT 113
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BLAST of mRNA_Ecto-sp13_S_contig77013.18942.1 vs. uniprot
Match: A0A6H5JPI3_9PHAE (MASE1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPI3_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 2.050e-65
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 1 
Query:    1 MFPCVGRILGGFIAQYIGVLASIKVFASPGGTIFWWTQTAIAIAAMLHTPDTHWPERVGHIASSMLTYIPFRFRKFPVPLLLAICASNCMGQFFGYVSMKHFYPVMSPKEVGT 339
            MFPCVGRILGGFIAQYIGVLASI+VFASPGGTIF WTQTAIAIAAMLHTPDTHWPERVGHIASS L YIPFRFRKFPVPLLLA+CASN +GQ FGYVSMKHFYPV+S +EVGT
Sbjct:    1 MFPCVGRILGGFIAQYIGVLASIRVFASPGGTIFSWTQTAIAIAAMLHTPDTHWPERVGHIASSTLPYIPFRFRKFPVPLLLAVCASNSLGQLFGYVSMKHFYPVLSSEEVGT 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77013.18942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNA2_ESV1K7.520e-6892.04EsV-1-186 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPK5_ECTSI4.200e-6691.15Histidine kinase-like protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPI3_9PHAE2.050e-6590.27MASE1 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77013contigEcto-sp13_S_contig77013:3..341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score221.9
Seed ortholog evalue1.6e-55
Seed eggNOG ortholog2880.D8LPK5
Model size339
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.phosphorelay sensor kinase activity
EggNOG OGsCOG0642@1,KOG0519@2759
Cds size339
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464041.5606544-CDS-Ecto-sp13_S_contig77013:2..3411681464041.5606544-CDS-Ecto-sp13_S_contig77013:2..341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77013 3..341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77013.18942.1prot_Ecto-sp13_S_contig77013.18942.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77013 3..341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77013.18942.1

>prot_Ecto-sp13_S_contig77013.18942.1 ID=prot_Ecto-sp13_S_contig77013.18942.1|Name=mRNA_Ecto-sp13_S_contig77013.18942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MFPCVGRILGGFIAQYIGVLASIKVFASPGGTIFWWTQTAIAIAAMLHTP
DTHWPERVGHIASSMLTYIPFRFRKFPVPLLLAICASNCMGQFFGYVSMK
HFYPVMSPKEVGT
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mRNA from alignment at Ecto-sp13_S_contig77013:3..341-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77013.18942.1 ID=mRNA_Ecto-sp13_S_contig77013.18942.1|Name=mRNA_Ecto-sp13_S_contig77013.18942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77013:3..341- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCCATGTGTTGGTCGCATTTTAGGCGGTTTCATCGCACAGTACAT
TGGCGTCCTCGCTAGCATCAAGGTCTTTGCTTCACCTGGAGGTACTATCT
TCTGGTGGACACAGACTGCGATCGCGATCGCGGCGATGCTGCACACCCCC
GATACACACTGGCCCGAGCGCGTCGGGCACATCGCGAGCAGCATGTTAAC
CTACATACCCTTTCGCTTCAGGAAGTTTCCTGTACCATTGCTGTTAGCTA
TTTGCGCAAGCAATTGTATGGGTCAATTTTTCGGGTACGTCTCAATGAAG
CACTTCTATCCGGTGATGTCACCCAAGGAAGTTGGAACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77013:3..341-

>mRNA_Ecto-sp13_S_contig77013.18942.1 ID=mRNA_Ecto-sp13_S_contig77013.18942.1|Name=mRNA_Ecto-sp13_S_contig77013.18942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77013:3..341- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCCATGTGTTGGTCGCATTTTAGGCGGTTTCATCGCACAGTACAT
TGGCGTCCTCGCTAGCATCAAGGTCTTTGCTTCACCTGGAGGTACTATCT
TCTGGTGGACACAGACTGCGATCGCGATCGCGGCGATGCTGCACACCCCC
GATACACACTGGCCCGAGCGCGTCGGGCACATCGCGAGCAGCATGTTAAC
CTACATACCCTTTCGCTTCAGGAAGTTTCCTGTACCATTGCTGTTAGCTA
TTTGCGCAAGCAATTGTATGGGTCAATTTTTCGGGTACGTCTCAATGAAG
CACTTCTATCCGGTGATGTCACCCAAGGAAGTTGGAACG
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