mRNA_Ecto-sp13_S_contig770.18938.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig770.18938.1 vs. uniprot
Match: D8LIG9_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIG9_ECTSI) HSP 1 Score: 583 bits (1503), Expect = 1.240e-202 Identity = 342/354 (96.61%), Postives = 346/354 (97.74%), Query Frame = 1
Query: 79 MSGSGRYRSVRAPPXXXHESLRRRIASWAGQEDRPPVDWFPTGHXXXXXXXXXXXXXXXXXXDSSDTASMSSRGRCDSGGSTPGDSSGSFGEGAXXXXXXXXXXXXXXXXX-----KRSRKRDWFKVLLAARNLATCVYAMSYTTTMPVLPFMANRLIYPRDPEGAGDPGSEGVREAWRGMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPALIAWAGDSADAILTVATMTMIISAAIVEITFVDTRPEGCRTQRMSRVVSDYLLEGASNLAEVAIE 1125
MSG GRYRS+RAPPXXXHESLRRRIASWAGQEDRPPVDWFPTGHXXXXXXXXXXXXXXXXX DSSDTASMSSRGRCDSGGSTPG+SSGSFGEGAXXXXXXXXXXXXXXXXX KRSRKRDWFKVLLAARNLATCVYA+SYTTTMPVLPFMANRLIYPR P+GAGDPGSEGVREAWRGMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPALIAWAGDSADAILTVATMTMIISAAIVEITFVDTRPEGCRTQRMSRVVSDYLLEGASNLAEVAIE
Sbjct: 1 MSGYGRYRSLRAPPXXXHESLRRRIASWAGQEDRPPVDWFPTGHXXXXXXXXXXXXXXXXXADSSDTASMSSRGRCDSGGSTPGESSGSFGEGAXXXXXXXXXXXXXXXXXXXXXXKRSRKRDWFKVLLAARNLATCVYAVSYTTTMPVLPFMANRLIYPRGPDGAGDPGSEGVREAWRGMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPALIAWAGDSADAILTVATMTMIISAAIVEITFVDTRPEGCRTQRMSRVVSDYLLEGASNLAEVAIE 354
BLAST of mRNA_Ecto-sp13_S_contig770.18938.1 vs. uniprot
Match: A0A835YWB9_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB9_9STRA) HSP 1 Score: 211 bits (537), Expect = 8.940e-63 Identity = 111/204 (54.41%), Postives = 145/204 (71.08%), Query Frame = 1
Query: 418 SRKRDWFKVLLAARNLATCVYAMSYTTTMPVLPFMANRLIYPRDPEGAGDPG------SEGVREAWRGMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPALIAWAGDSADAILTVATMTMIISAAIV 1011
S ++W V+ + RN+ T VYA+SYT ++PVLPFMA R +Y E G G S GV EAWRG+ YG VMSGYY TKMI+AP IGFLSDR+GR+ LVVT LG ++F +T L G++S+HGL++CRLL+GCFAANGALM AYIRD+VP E Q+SAF+QHSA+WG AY+ A L+A + L +A + M ++A +V
Sbjct: 65 SSAKEWAAVVFSPRNVVTLVYALSYTLSIPVLPFMARRHLYGYRDEFVGPDGKVMIDESPGVPEAWRGIGYGCVMSGYYATKMIAAPLIGFLSDRVGRKMLLVVTFLGSCVTFTLTCLMGRHSLHGLVLCRLLLGCFAANGALMMAYIRDSVPREAQASAFAQHSAAWGMAYVVATPLLAALREDPVRCLVLAAVCMALAALLV 268
BLAST of mRNA_Ecto-sp13_S_contig770.18938.1 vs. uniprot
Match: A0A4Y5Z9U7_9GAMM (TCR/Tet family MFS transporter n=1 Tax=Luteibacter pinisoli TaxID=2589080 RepID=A0A4Y5Z9U7_9GAMM) HSP 1 Score: 76.6 bits (187), Expect = 1.030e-11 Identity = 56/165 (33.94%), Postives = 82/165 (49.70%), Query Frame = 1
Query: 439 KVLLAARNLATCVYAMSYTTTMPVLPFMANRLIYPRDPEGAGDPGSEGVREAWRGMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPAL 933
K +LAA + AM T+PV+P + GD G GV WR +G+ + Y L + + AP +G LSDR+GRR L+V+LLG AL++ + Y L+ R L G F ++ ++ A+I DT P E +S F Q A G ++ P L
Sbjct: 2 KPVLAAVLCTAALDAMGVALTLPVMPALL------------GDVGL-GVDLGWR---FGVFIGIYALMQFLLAPAVGALSDRLGRRPVLLVSLLGQALAYAALAVAPSYG--WLLAARALAGVFGSSTPVVSAFIADTTPAEERSRRFGQLGACMGVGFIVGPLL 148
BLAST of mRNA_Ecto-sp13_S_contig770.18938.1 vs. uniprot
Match: A0A1G2F2B9_9BACT (MFS domain-containing protein n=1 Tax=Candidatus Niyogibacteria bacterium RIFCSPLOWO2_12_FULL_41_13 TaxID=1801726 RepID=A0A1G2F2B9_9BACT) HSP 1 Score: 74.3 bits (181), Expect = 6.560e-11 Identity = 48/150 (32.00%), Postives = 76/150 (50.67%), Query Frame = 1
Query: 484 MSYTTTMPVLPFMANRLIYPRDPEGAGDPGSEGVREAWRGMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPAL 933
+SY +P LPF A + G G G + GL+ + Y L++ I P+IG LSDR+GRR+ ++ +LLG ALS L ++ L++ R+ G F + + AY+ D P E ++ A A++G ++A PAL
Sbjct: 20 LSYGILIPFLPFYAEKF-------GGG------------GFSIGLLFAAYALSQFIFTPFIGRLSDRIGRRRIIIFSLLGEALSLLALVF--AFAYWWLLLVRIFGGIFGSIAGVAQAYLSDITPAEKKTKAMGYFGAAFGAGFIAGPAL 148
BLAST of mRNA_Ecto-sp13_S_contig770.18938.1 vs. uniprot
Match: A7H6K9_ANADF (Major facilitator superfamily MFS_1 n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) TaxID=404589 RepID=A7H6K9_ANADF) HSP 1 Score: 70.5 bits (171), Expect = 1.070e-9 Identity = 47/150 (31.33%), Postives = 76/150 (50.67%), Query Frame = 1
Query: 484 MSYTTTMPVLPFMANRLIYPRDPEGAGDPGSEGVREAWRGMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPAL 933
+ + +PV+P A RL G EAW G L+ +GY + + AP G LSDR+GRR L+V++ A++F + L G +++ L++ RL G AN A+ A++ D PPE ++ A++G ++ PAL
Sbjct: 19 LGFGMVIPVMPLYAERL---------------GASEAWTG----LLSAGYSAMQFVFAPIWGRLSDRVGRRPVLLVSIAMTAVAFALYGLAGTFAM--LLVSRLFAGAATANIAIARAFVADVTPPEGRARGMGIIGAAFGLGFVLGPAL 147
BLAST of mRNA_Ecto-sp13_S_contig770.18938.1 vs. uniprot
Match: UPI001F59A106 (MFS transporter n=1 Tax=Anaeromyxobacter sp. SG63 TaxID=2925408 RepID=UPI001F59A106) HSP 1 Score: 70.5 bits (171), Expect = 1.120e-9 Identity = 50/161 (31.06%), Postives = 77/161 (47.83%), Query Frame = 1
Query: 448 LAARNLATCVYAMSYTTTMPVLPFMANRLIYPRDPEGAGDPGSEGVREAWRGMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPA 930
LA + V + + +PV+P A L G EAW G L+ +GY + + AP G LSDR+GRR L+V++ A +FLV L G +++ L+ RL G AN A+ A++ D PPE ++ A++G ++ PA
Sbjct: 7 LAILFVIVFVDLLGFGMVIPVMPLYAKAL---------------GASEAWTG----LLSTGYSAMQFVFAPIWGRLSDRVGRRPVLLVSIFMTAAAFLVYGLAGSFAV--LLASRLFAGAATANIAIARAFVADVTPPEGRARGMGLIGAAFGLGFVLGPA 146
BLAST of mRNA_Ecto-sp13_S_contig770.18938.1 vs. uniprot
Match: A0A1F4GGQ8_9BURK (Tetracycline transporter n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A1F4GGQ8_9BURK) HSP 1 Score: 70.1 bits (170), Expect = 1.580e-9 Identity = 49/157 (31.21%), Postives = 81/157 (51.59%), Query Frame = 1
Query: 481 AMSYTTTMPVLPFMANRLIYPRDPEGAGDPGSEGVREAWRGMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPALIAWAGD 951
AM + +L M+ +I P P+ G + G + +AYGL + + + + SAP +G LSDR GRR L++ L G A++F VT L ++ + L+ R++ G AN A+ +AY+ D PE ++ + A +G ++ P L GD
Sbjct: 10 AMPFIMITVLLDMMSIGIIAPVLPKLIGTFMASGASTS---VAYGLAQAAFAVAQFFSAPVLGALSDRYGRRPVLLLGLFGMAINFFVTALATEFWM--LLAVRIMGGAVCANIAVANAYVADITEPEDRAKNYGLLGAMFGVGFILGPVLGGLLGD 161
BLAST of mRNA_Ecto-sp13_S_contig770.18938.1 vs. uniprot
Match: A0A522AKY7_9BACT (MFS transporter n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A522AKY7_9BACT) HSP 1 Score: 69.7 bits (169), Expect = 2.200e-9 Identity = 43/125 (34.40%), Postives = 65/125 (52.00%), Query Frame = 1
Query: 601 GMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSF----LVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPALIAWAGD-SAD 960
G GL+M+ + + I APW G LSDRMGRR L++++ G +++ L T+L G ++ +I R+ G AN + AYI D PPE +S ++G ++ P W G SAD
Sbjct: 38 GFELGLLMASFSAMQFIFAPWWGHLSDRMGRRPVLLISIAGSVVAYAWFALATRLTGATALWMIIASRVFAGICGANITVAQAYIADITPPEHRSKRMGLIGMAFGLGFIFGP----WIGGRSAD 158
BLAST of mRNA_Ecto-sp13_S_contig770.18938.1 vs. uniprot
Match: A0A1F6C8N1_HANXR (MFS domain-containing protein n=1 Tax=Handelsmanbacteria sp. (strain RIFCSPLOWO2_12_FULL_64_10) TaxID=1817868 RepID=A0A1F6C8N1_HANXR) HSP 1 Score: 68.9 bits (167), Expect = 3.520e-9 Identity = 52/157 (33.12%), Postives = 76/157 (48.41%), Query Frame = 1
Query: 463 LATCVYAMSYTTTMPVLPFMANRLIYPRDPEGAGDPGSEGVREAWRGMAYGLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPAL 933
L + + + +P+LP+ A GAG +A L+ S Y L + + AP G LSDR+GRR LV++L G ALS+L+ L G S+ L RLL G AAN + AYI D PE ++ A++G ++ PA+
Sbjct: 11 LTVFIDLLGFGIVLPLLPYYAEGF-------GAGP------------LAVTLLSSSYSLMQFLFAPVWGRLSDRVGRRPILVLSLAGSALSYLLFGLAG--SLAALFATRLLAGVCAANISTAQAYIADVTTPETRAKGMGMIGAAFGLGFIFGPAV 146
BLAST of mRNA_Ecto-sp13_S_contig770.18938.1 vs. uniprot
Match: A0A7C1W9V9_9BACT (MFS transporter n=1 Tax=Candidatus Fraserbacteria bacterium TaxID=2268184 RepID=A0A7C1W9V9_9BACT) HSP 1 Score: 68.9 bits (167), Expect = 3.720e-9 Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 1
Query: 613 GLVMSGYYLTKMISAPWIGFLSDRMGRRQALVVTLLGGALSFLVTKLWGQYSIHGLIMCRLLMGCFAANGALMHAYIRDTVPPEWQSSAFSQHSASWGCAYLAAPALIAWAGD 951
GL+M+ Y L + I AP G +SDR+GRR ++++LLG L++ + L + L + RLL G F N + AYI D PPE ++ ++G ++ PAL W G
Sbjct: 43 GLLMASYSLMQFIFAPIWGQISDRVGRRPIILLSLLGSVLAYTLFGLASSLPL--LFLARLLAGLFGGNISAAQAYIADITPPEERARGMGLIGMAFGLGFIFGPALGGWLGS 153 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig770.18938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig770.18938.1 >prot_Ecto-sp13_S_contig770.18938.1 ID=prot_Ecto-sp13_S_contig770.18938.1|Name=mRNA_Ecto-sp13_S_contig770.18938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=382bp LLSLHHRDPEPAGDQPATRRASTGAAMSGSGRYRSVRAPPPPPHESLRRRback to top mRNA from alignment at Ecto-sp13_S_contig770:1226..3645- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig770.18938.1 ID=mRNA_Ecto-sp13_S_contig770.18938.1|Name=mRNA_Ecto-sp13_S_contig770.18938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig770:1226..3645- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig770:1226..3645- >mRNA_Ecto-sp13_S_contig770.18938.1 ID=mRNA_Ecto-sp13_S_contig770.18938.1|Name=mRNA_Ecto-sp13_S_contig770.18938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp13_S_contig770:1226..3645- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |