mRNA_Ecto-sp13_S_contig77.18934.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77.18934.1
Unique NamemRNA_Ecto-sp13_S_contig77.18934.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77.18934.1 vs. uniprot
Match: D7FJ16_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ16_ECTSI)

HSP 1 Score: 504 bits (1299), Expect = 6.850e-176
Identity = 291/364 (79.95%), Postives = 297/364 (81.59%), Query Frame = 1 
Query:    1 MAAFGARGAGYGLDAELARQREAKYDHSAENQARAWIEAVTGERVVGPFGDALRDGVNICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNKQQKQQAKVNASFSKLGMGSAHSMEHNQCISKPGICFGAENAGAGDTTTVGKLAKGSHGIQERLPVNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKANDVTFCASASQATPLDGNKEKDADARASVPEKPTADCPVSAAMSPLVFGCDAVENNNRSWFQARSG 1092
            MAAFGARGAGYGLDAELARQREAKYDHSAE+QARAWIEAVTGERVVGPFGDALRDGV ICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFN++QKQQAKVNASFSKLGMGSAHSME +Q ISKPGICFGAENAG GDTTTVGKL KGSHGIQERLPV+Q     XXXXXXXXXXXXXXXXXX                                                 S ANDVTF A +SQA PLDGNKEKDADA  SVPEKPTADCPVSAAMSPLVFGCD VE NNRSWFQARSG
Sbjct:    1 MAAFGARGAGYGLDAELARQREAKYDHSAEDQARAWIEAVTGERVVGPFGDALRDGVVICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNEEQKQQAKVNASFSKLGMGSAHSMERSQ-ISKPGICFGAENAGTGDTTTVGKLTKGSHGIQERLPVDQSRSITXXXXXXXXXXXXXXXXXXQPSLSSYGIMDRNSF----------------------------------SNANDVTFGAPSSQARPLDGNKEKDADAGVSVPEKPTADCPVSAAMSPLVFGCDTVEKNNRSWFQARSG 329
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BLAST of mRNA_Ecto-sp13_S_contig77.18934.1 vs. uniprot
Match: A0A835ZHQ8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ8_9STRA)

HSP 1 Score: 234 bits (597), Expect = 9.630e-71
Identity = 116/199 (58.29%), Postives = 149/199 (74.87%), Query Frame = 1 
Query:   19 RGAGYGLDAELARQREAKYDHSAENQARAWIEAVTGERVVGPFGDALRDGVNICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNKQQKQQAKVNASFSKLGMGSAHSMEHNQCISKPGICFGAENAGAGDTTTV 615
            RG GYGLDAELA +  AKYD   E  A+ W+EAVTG +  G F  +L+DG  +C+L+N IKPG +++IN S+MPFKQMENISNFLK+CR +GVAE+SLFETVDL+E KD+GLV+RC+FALGSAVQ + PE+ GP LGAKPH  NKR F  +Q +QA+++ + +K   GSA  ME    + K GI  GAE AG GDT+++
Sbjct:    4 RGGGYGLDAELALKAAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKRINSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAKPHTANKREFTAEQMRQARLDTTMTKAMQGSAAVMERLPIV-KTGITAGAEYAGIGDTSSM 201
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BLAST of mRNA_Ecto-sp13_S_contig77.18934.1 vs. uniprot
Match: A0A836CGB8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB8_9STRA)

HSP 1 Score: 226 bits (575), Expect = 5.340e-68
Identity = 116/201 (57.71%), Postives = 146/201 (72.64%), Query Frame = 1 
Query:   13 GARGAGYGLDAELARQREAKYDHSAENQARAWIEAVTGERVVGPFGDALRDGVNICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNKQQKQQAKVNASFSKLGMGSAHSMEHNQCISKPGICFGAENAGAGDTTTV 615
            GARG GYGLDAELAR+  A YD++ E+ A+ WIEAVT  +  G F  AL+DG  +CKL+N I+PG V+KIN S MPFKQMENIS +LK CRA+GVAEHSLFETVDLYE KDI LV++C+FALGS +Q + PE+ GP LGAK H  NKR F  +Q  +A++  + +K   GSA  ME    ++K GI  GAE AG GD+ ++
Sbjct:    3 GARGGGYGLDAELARKAAANYDYAGEHAAQEWIEAVTRVKFEGTFAAALKDGSVLCKLLNAIRPGTVKKINTSSMPFKQMENISAYLKGCRALGVAEHSLFETVDLYEEKDISLVIKCLFALGSTIQSSVPEFHGPHLGAKMHTANKREFTAEQMAKARLGGAITKQTQGSAAVMERLH-VTKGGITMGAEYAGTGDSGSI 202
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BLAST of mRNA_Ecto-sp13_S_contig77.18934.1 vs. uniprot
Match: A0A6H5L3X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X7_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 2.710e-66
Identity = 121/199 (60.80%), Postives = 145/199 (72.86%), Query Frame = 1 
Query:   13 GARGAGYGLDAELARQREAKYDHSAENQARAWIEAVTGERVVGPFGDALRDGVNICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNKQQKQQAKVNAS--FSKLGMGSAHSMEHNQCISKPGICFGAENAGAGD 603
            G RG GYGLDAELA +REA YD      A+ WIE VTGER    FG+ L+DG  +C L+N IKPGAVR++N+SRMPFKQMEN+SNFLK+CRA+GVAEHSLFETVDLYEGKD+GLVVRC+ ALG  VQ +CPEY GP LG K  + NKR + ++Q+QQ   N+S   S L  GS+ +ME    I K G  FGA  +G GD
Sbjct:  340 GGRGGGYGLDAELAARREANYDXXXXXXAQEWIEDVTGERFAEGFGEELKDGRKLCLLINQIKPGAVRRVNDSRMPFKQMENVSNFLKACRAVGVAEHSLFETVDLYEGKDLGLVVRCLHALGQTVQNSCPEYNGPRLGIKQTEANKREWTEEQQQQQLRNSSGAMSNLLAGSSKTMER-ATILKTGATFGAAQSGTGD 537
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BLAST of mRNA_Ecto-sp13_S_contig77.18934.1 vs. uniprot
Match: K3WZS5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZS5_GLOUD)

HSP 1 Score: 194 bits (492), Expect = 3.850e-52
Identity = 102/193 (52.85%), Postives = 135/193 (69.95%), Query Frame = 1 
Query:   16 ARGAGYGLDAELARQREAKYDHSAENQARAWIEAVTGERVVGPFGDALRDGVNICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNKQQKQQAKVNASFSKLGMGSAHSMEHNQCISKPGICFGAENA 591
            ARG GYGLDAELAR+   +YD+  E++ARAWIEAV+G  +   FG+ LRDGV +C LVN I P  V++I  +S+MPFK MEN+S+FL++CR MGV+E  LFETVDL+E KD+G VVRCIFALG AVQ T P++ GPTLG K   +N+R F +++  +A+   S   + +GS  +ME         + FGAE A
Sbjct:    8 ARGGGYGLDAELARRAAERYDYEMEDEARAWIEAVSGMAIGDEFGEGLRDGVILCTLVNKIHPDIVKRIETKSKMPFKLMENVSSFLRACRTMGVSEFDLFETVDLFELKDLGHVVRCIFALGRAVQKTYPDFNGPTLGVKESVKNERTFTEEKLNEARAAPSL--VNLGSFRTMERLDVSRGNSVTFGAEAA 198
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BLAST of mRNA_Ecto-sp13_S_contig77.18934.1 vs. uniprot
Match: A0A2D4CAP3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAP3_PYTIN)

HSP 1 Score: 189 bits (480), Expect = 6.440e-52
Identity = 99/191 (51.83%), Postives = 130/191 (68.06%), Query Frame = 1 
Query:   16 ARGAGYGLDAELARQREAKYDHSAENQARAWIEAVTGERVVGPFGDALRDGVNICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNKQQKQQAKVNASFSKLGMGSAHSMEHNQCISKPGICFGAE 585
            ARG GYGLDAELA++   KYD+  E++AR WIEA+TG  +   FG+ LRDGV +C+L N I PG +R+I  +S+MPFK MEN+S FLK+CR +GV E+ LFETVDL+E K +GLVVRC+ ALG AVQ   P + GPTLG K   +N+R F ++Q  QA+   S   L +GS  +ME         + FGA+
Sbjct:    8 ARGGGYGLDAELAQRAAEKYDYEMEDEARQWIEAITGREIGASFGEGLRDGVILCELANKIHPGVIRRIETKSKMPFKLMENVSAFLKACRTIGVNEYELFETVDLFELKXLGLVVRCLHALGRAVQKNYPSFNGPTLGVKEAAKNERQFTEEQIAQARNAPSL--LSLGSMRTMERLDVSRANDVTFGAD 196
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BLAST of mRNA_Ecto-sp13_S_contig77.18934.1 vs. uniprot
Match: A0A8K1CMC3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMC3_PYTOL)

HSP 1 Score: 190 bits (483), Expect = 7.500e-50
Identity = 97/190 (51.05%), Postives = 131/190 (68.95%), Query Frame = 1 
Query:   19 RGAGYGLDAELARQREAKYDHSAENQARAWIEAVTGERVVGPFGDALRDGVNICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNKQQKQQAKVNASFSKLGMGSAHSMEHNQCISKPGICFGAE 585
            RG GYGLDAELA++   +YD+  E++AR W+E +TG  +   FG+ LRDGV +C+LVN I PG V+++  +S+MPFK MEN+S FL++CRAMGV E  LFETVDL+E KD+GLVVRCI ALG A Q   P++ GPTLG K   +N+R F+++Q  +A+   SF  +  GS  +ME         + FGAE
Sbjct:    8 RGGGYGLDAELAKRAAERYDYDLEDEARYWVEEITGMEIGDDFGEGLRDGVILCELVNKIHPGVVKRVETKSKMPFKLMENVSGFLRACRAMGVNEFELFETVDLFELKDLGLVVRCIHALGRATQKNYPDFKGPTLGVKESSKNERQFSEEQLAEARNAPSF--IAQGSVRTMERADVRKANDLTFGAE 195
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BLAST of mRNA_Ecto-sp13_S_contig77.18934.1 vs. uniprot
Match: A0A662Y5N1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5N1_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.140e-48
Identity = 96/193 (49.74%), Postives = 127/193 (65.80%), Query Frame = 1 
Query:   16 ARGAGYGLDAELARQREAKYDHSAENQARAWIEAVTGERVVGPFGDALRDGVNICKLVNTIKPGAVRKIN-ESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQENKRIFNKQQKQQAKVNASFSKLGMGSAHSMEHNQCISKPGICFGAENA 591
            ARG G+GLDAELAR+   +YD+  EN+AR WIEA++G  +   FG  L+DGV +C + N I PG VR++  +S+MPFKQMEN+S FLK+CR MGV E  LFETVDL+E KD+G VVRCIFALG +VQ + P++ GPTLG K   +N+R F   Q   A+   +   LG  S  +M+         +  GA+ A
Sbjct:   55 ARGGGFGLDAELARKAAERYDYGMENEARQWIEAISGMEIGDDFGTGLKDGVILCSVANKIHPGIVRRVETKSKMPFKQMENVSGFLKACRVMGVNEFDLFETVDLFELKDLGNVVRCIFALGRSVQRSYPDFNGPTLGVKESSKNQRTFTPDQLADARNAPALQSLG--SFRTMKRQNTFHSNNVTLGADAA 245
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BLAST of mRNA_Ecto-sp13_S_contig77.18934.1 vs. uniprot
Match: D7FNP0_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP0_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.470e-46
Identity = 100/226 (44.25%), Postives = 129/226 (57.08%), Query Frame = 1 
Query:   58 QREAKYDHSAENQARAWIEAVTGERVVGPFGDALRDGVNICKLVNTIKPGAVRKINESR--MPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIF----------------------------------------ALGSAVQGTCPEYTGPTLGAKPHQENKRIFNKQQKQQAKVNAS--FSKLGMGSAHSMEHNQCISKPGICFGAENAGAGD 603
            +  A Y    + +A+AW+E VTGE + G F D LRDGV +CKL+NTIKP +VR++N  +    FKQMENISNF++ CRA+GV E+SLFETVDLYEGKD+GLVV+C+                                         ALG  VQ +CPEY GP LG K  + NKR + ++Q+QQ   N+S   S L  GS+ +ME    I K G  FGA  +G GD
Sbjct:    8 ESSAGYGGDLQAEAQAWVEQVTGEPLEGDFADGLRDGVRLCKLLNTIKPSSVRRVNPFKEGQKFKQMENISNFIRGCRAIGVPEYSLFETVDLYEGKDVGLVVKCLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALGQTVQNSCPEYNGPRLGIKQTEANKREWTEEQQQQQLRNSSGAMSNLLAGSSKTMERATVI-KTGATFGAAQSGTGD 232
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BLAST of mRNA_Ecto-sp13_S_contig77.18934.1 vs. uniprot
Match: A0A7R9YD67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD67_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.080e-46
Identity = 84/130 (64.62%), Postives = 104/130 (80.00%), Query Frame = 1 
Query:   16 ARGAGYGLDAELARQREAKYDHSAENQARAWIEAVTGERVVGPFGDALRDGVNICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVAEHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCP 405
            ARG GYGLDA+LA+ R  KYD+  E + + WIEAVTGE   G FG++L+DG  +CKL+N IKPG++R IN S++PFKQMEN+S FL++CRA+GVAEH LFETVDLYE KD+G+VV CI ALG AVQ T P
Sbjct:  289 ARGGGYGLDAQLAQIRLDKYDYDLEAEVKEWIEAVTGEAFPGGFGESLKDGRILCKLINAIKPGSIRIINTSKLPFKQMENVSVFLRNCRALGVAEHDLFETVDLYELKDLGVVVNCIHALGGAVQKTVP 418
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77.18934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ16_ECTSI6.850e-17679.95Calponin-homology (CH) domain-containing protein n... [more]
A0A835ZHQ8_9STRA9.630e-7158.29Calponin homology domain-containing protein n=1 Ta... [more]
A0A836CGB8_9STRA5.340e-6857.71Calponin homology domain-containing protein n=1 Ta... [more]
A0A6H5L3X7_9PHAE2.710e-6660.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K3WZS5_GLOUD3.850e-5252.85Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4CAP3_PYTIN6.440e-5251.83Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1CMC3_PYTOL7.500e-5051.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662Y5N1_9STRA1.140e-4849.74Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
D7FNP0_ECTSI1.470e-4644.25Calponin-homology (CH) domain-containing protein n... [more]
A0A7R9YD67_9STRA2.080e-4664.62Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77contigEcto-sp13_S_contig77:14127..18681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score508.8
Seed ortholog evalue2.1e-141
Seed eggNOG ortholog2880.D7FJ16
Preferred nameSCP1
Model size1392
KEGG koko:K20526
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0001300,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007568,GO:0007569,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0030479,GO:0030674,GO:0030863,GO:0030864,GO:0032502,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044877,GO:0048869,GO:0051015,GO:0051301,GO:0051764,GO:0060090,GO:0061640,GO:0061645,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
Exons11
EggNOG free text desc.actin binding
EggNOG OGsCOG5199@1,KOG2046@2759
Ec32 ortholog descriptionCalponin homology domain
Ec32 orthologEc-07_004790.1
Cds size1095
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77.18934.1prot_Ecto-sp13_S_contig77.18934.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77 14127..18384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464040.495431-CDS-Ecto-sp13_S_contig77:14126..142281681464040.495431-CDS-Ecto-sp13_S_contig77:14126..14228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 14127..14228 +
1681464040.5095756-CDS-Ecto-sp13_S_contig77:15154..152351681464040.5095756-CDS-Ecto-sp13_S_contig77:15154..15235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 15155..15235 +
1681464040.5190902-CDS-Ecto-sp13_S_contig77:15406..155411681464040.5190902-CDS-Ecto-sp13_S_contig77:15406..15541Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 15407..15541 +
1681464040.5328102-CDS-Ecto-sp13_S_contig77:15796..159221681464040.5328102-CDS-Ecto-sp13_S_contig77:15796..15922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 15797..15922 +
1681464040.544626-CDS-Ecto-sp13_S_contig77:16125..162221681464040.544626-CDS-Ecto-sp13_S_contig77:16125..16222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 16126..16222 +
1681464040.5559046-CDS-Ecto-sp13_S_contig77:16235..162461681464040.5559046-CDS-Ecto-sp13_S_contig77:16235..16246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 16236..16246 +
1681464040.5667956-CDS-Ecto-sp13_S_contig77:16371..164491681464040.5667956-CDS-Ecto-sp13_S_contig77:16371..16449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 16372..16449 +
1681464040.5775905-CDS-Ecto-sp13_S_contig77:16630..167411681464040.5775905-CDS-Ecto-sp13_S_contig77:16630..16741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 16631..16741 +
1681464040.5924249-CDS-Ecto-sp13_S_contig77:17539..176411681464040.5924249-CDS-Ecto-sp13_S_contig77:17539..17641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 17540..17641 +
1681464040.6065977-CDS-Ecto-sp13_S_contig77:17936..180441681464040.6065977-CDS-Ecto-sp13_S_contig77:17936..18044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 17937..18044 +
1681464040.6154776-CDS-Ecto-sp13_S_contig77:18240..183841681464040.6154776-CDS-Ecto-sp13_S_contig77:18240..18384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 18241..18384 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464040.624542-UTR-Ecto-sp13_S_contig77:18384..186811681464040.624542-UTR-Ecto-sp13_S_contig77:18384..18681Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig77 18385..18681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77.18934.1

>prot_Ecto-sp13_S_contig77.18934.1 ID=prot_Ecto-sp13_S_contig77.18934.1|Name=mRNA_Ecto-sp13_S_contig77.18934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=365bp
MAAFGARGAGYGLDAELARQREAKYDHSAENQARAWIEAVTGERVVGPFG
DALRDGVNICKLVNTIKPGAVRKINESRMPFKQMENISNFLKSCRAMGVA
EHSLFETVDLYEGKDIGLVVRCIFALGSAVQGTCPEYTGPTLGAKPHQEN
KRIFNKQQKQQAKVNASFSKLGMGSAHSMEHNQCISKPGICFGAENAGAG
DTTTVGKLAKGSHGIQERLPVNQSRSITFGNDKVGTGDTTTIGKLTQGSH
GIQERLPVDQLRITTFGNDKRGTGDTKVMTKPGLSSYGIMDRNSVSKAND
VTFCASASQATPLDGNKEKDADARASVPEKPTADCPVSAAMSPLVFGCDA
VENNNRSWFQARSG*
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mRNA from alignment at Ecto-sp13_S_contig77:14127..18681+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77.18934.1 ID=mRNA_Ecto-sp13_S_contig77.18934.1|Name=mRNA_Ecto-sp13_S_contig77.18934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77:14127..18681+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCCTTCGGAGCTCGCGGAGCTGGGTATGGACTGGACGCGGAACT
TGCTCGTCAGAGAGAGGCGAAGTATGACCATTCCGCGGAAAACCAAGCGC
GGGTACGTGCTGCACGAGGGGACTGACTCTACTGCTCTTATCTCGACTGC
TGTGCGAGGAACGATGCGCCTGTTCTGTGTTGTGGACCCTCTCGCTGCGT
TGAGCCCATCAGAGGCGACCTTGCATAGTATATACATGCAGGTGCATGAC
GACGCACACAACAGGAAGTCGTGCGGTTGTGTAAGTTCTGAATAGTATCG
AAGTGCGCGGTCTTTGGAGGTCAAGCTGACTGCAAAACATATGCCGGACC
GCGGAGACATTCCGTTCTCTTGTAATCATACGCGAAGTAGATGGTAGCAG
TTCCTCGCCCTAACTCTACCCTCGCTCCAGCCCGCGATTGCGCTCACAGT
TGTTGAGGATATTGAAGGAGGTGTGTGTCGAGGTGAAGCCCCATGATCTT
GGCACGTCGCGAGAAAAACTATTCGTCCTTGGCGGGGGGCTGAGTAGATG
ACCATCAAATGTTTTGACCGCTAGACTTGGAAACTGCTTTTGCTGACACT
CGGAATTGGGGTCGTTCTAGATCGACTTTCGTCAACCGTCGACAAGTGAT
TCATCATAGGGTTCTGGAGGGTGTGTGATCACCATACTTAAAAATAACGT
GTCATTTATTCAACGACGAAGTCTGTATCCCATCCGCACAACACGGTGGC
GAGCGAAACCCAGAACATCTTGTTTGGTCGCTTCTACAGTAGTGGTGTAG
GGTGATGTGCCGGTTTATTTCCTCTCGATACACTTTCAAAGTGTCAAGTA
CAGCTTTCGAAATCGTTCAGTCGAACGCGCTTTGGATCCAAGGGCGTGCG
TGACGCATTGAGCGCAAACATACTTTGAGTCCGGTCGATATTTAGCATTT
GCTTCGAAATCGCGTTCTGTGTACTCTCTCTATATATATGTACCTGTTCC
TCACAGTCGCATGGCCCCCGTCGTGCAGGCATGGATCGAAGCAGTGACAG
GCGAGCGGGTTGTTGGGCCCTTCGGAGATGCCTTGAGAGATGGCGTCAAT
ATCTGCAAGGTGATCGAACGAGCATTCGTTTTTCCGACATAGAGAATGCG
GAGTTCTCAGCAAGCATTGTACTCTTTGCCCTGTTCTTGTACCGCTGAAG
GATCGAAACCCTTAGAGCGAACCTCATGTAAAGCTTTCCGACCGTTTCCC
CAACCCCAAGTAATCCTAACACCCCGATAGCTTGTCAACACTATCAAGCC
GGGTGCGGTGCGGAAGATCAACGAGTCGAGGATGCCCTTCAAACAGATGG
AAAATATCTCCAACTTTCTGAAATCCTGCAGGGCGATGGGAGTCGCCGAG
CATTCGCTGTTCGAGGTGCGGGAATCAACACAGTCGGCATTCTTGTGCTA
TTGGTTGCTATATGTAAAGCCAGGTTGTACGGCAGAGATGCGACGCAATC
GTTTCATGCTCCGTTGCTGCTAGGCCTGCAGTTGTCACCGTCGACGTTCT
GTGGTCCTGTAGGTCCGGAGAGAGAGGCCAGAGCGCATGCCTTCTCGCAT
CACGTCACAGGTTTTCACCTTTGTCTTTTGCTCTGTACTTGCTACATCGT
CGCTCTGTCGCCGCAAAAAGACGGTGGATCTGTACGAAGGAAAAGACATT
GGGCTAGTGGTGCGCTGCATTTTTGCCTTGGGAAGCGCCGTTCAGGGGAC
TTGCCCGGAGTACACCGGGCCGACCTTAGGCGCCAAGCCTCATCAGGTAA
ATGAAAGAAAGTTGGAGCTACAGGGTGGCAGACAGGCAACTACCGGTGGT
GCGAGAACGTTTTTGCCTTTTCCGCAGCAGGATAGCAGTGCTGCTTCTTC
TGATCACAAATAGTGTGGGCGTGCATGTCCGACTTCATGCAGTGTACAGC
CGTTCCATACGATTTTTTTTTAATGTTGCTGTTGTGATGCACAAACCAGG
AAAACAAGCGGATTTTCAACAAGCAGCAGAAGCAACAGGCCAAAGTCAAC
GCCTCGTTCTCCAAGCTCGGCATGGGTTCGGCCCACAGCATGGAGCGTAC
ACAGGCAAGATAATCAATGTGTCTATTTTTGCGCGATAGAGTTTAAGGCG
ACCCTGGAAACCTTCCCGCGTCACCTCGACTCTTGCACGCTGCTGAAATT
CCATGAAACTCCCGGATTTCTCTCTGTGTGTGGAATCCTCAACAGATTTC
TAAACCAGGCATTTGCTTTGGAGCCGAGAACGCTGGCGCTGGGGACACCA
CCACCGTCGGCAAACTAGCGAAGGTGAAACAGGGAAATCGTGAAGTGGTG
CCAAGTCGTTGTCGCGTTGAGTTGTCGCGGAGATTGGCTGATCGACACAC
TTGATGCCCTTGTGTGCCATCAGAGCCGAAACACGACAAATCTGAGGAAG
CAAGATATTTTGAGCATGAGACGTTCGCGTTTGTTTCTGCTCATAACACC
GAAGGGCTCACATGGTATTCAAGAGCGCCTTCCGGTGAATCAATCCAGGA
GCATTACGTTTGGCAACGACAAGGTCGGAACAGGTGACACCACAACCATC
GGCAAGCTCACTCAGGTTAGTCATTGTGGGCTTGAGAAGAGGGTGGGCGG
TGAGGGTTTGCTACGTACCTTGAAACCTCTGCATCGTCTAACATCGTTTA
TGATACTGATTACGGTGAAGAACAGAATCCCGACCGGATGTCTTTAGGAG
GCTCGCTACGTGAGATGTAGCCTCCCCGTTGAAAGCTCCCCGTGACAACC
GGTAAATCTTCATAGATTCAAGGATACGCTACCATCCACAAGCAACTTCT
GGTGTGTGTGTGTTTTCGTCCTACTTATTATGGCGACAGTGACGTGTGCT
ACATTTTTCAGTTTATTGTTTCGTACAACTGCAACCATCCAGGGTCACAC
ACGAGGGGGTAAACACCAGGGCGTTACTCTTATTTTTATTCATTTTCGTG
CCCTACCTTCCTCCTTCGGTGCGTGCTGAATTTTATTTTATCGCGAGAAG
GGTCCAGCCGTCCCTTTCCCTCGTCAACGGTGTTGAAAACGGATTTTGTT
CCTCACGAGAGCTTTTTCAGCCATATTTCGCTTTTGCCCGCAAACTTTGA
AAATTTTCGGTCCCATGGGGATTCGAACTCACGACATTTCCTTGCGACTA
GCGGTTTTTCGAGGATACCGCTAGACCACCTGGGCGACCGTCGCTTCTGG
TAGAGGAGGTAAATGAAGTCTTGACCTTTGTAGCTACGTATTGGCTTGTC
GAATGCAGCCAACAACAACGAGATCATCAATGGTACGCCTCAAAAGCACC
TCGTGGTTCTACGATGGCCACGAGACCTGTTTTGAAACGCCCCCTTTTAC
TCGTACACCCAAGGGTTCACATGGTATTCAAGAACGCCTTCCGGTGGATC
AACTTAGGATCACTACGTTTGGCAACGATAAACGCGGAACCGGTGACACG
AAGGTCATGACAAAGGCACGATTTATTCGCTTGTAAGCCGTTGTTCTGGG
TCTGGCGAGATAGTAGCAGGGTGAGAGTTGAAAATGTGGCCTCAACACCG
GTCATCTAGACGACAACCGCGTTTGTTTGGCGACAGACATGTACGTCACC
ATGTGTTCAAACTATTGAGGCGAATGAATATTGTAGACTTAGGTCGTGTG
CCTTGTGTTCGACAGAGCATACCCGTGCTTTGTCTATGAACGACTATGCC
AATGCATAGCTACGTCTTGTGAGAACGCAAACAAACCCACCGCCGTCACA
CGTTTCACAGCCCGGCTTGAGCTCATACGGAATCATGGACCGCAACTCCG
TTTCTAAAGCCAACGACGTCACTTTCTGTGCCTCAGCCAGTCAGGCCACG
CCCCTCGATGGAAACAAGGTATGCACGAGACAATATGAAGCAGCCTATTG
CTCAACGTATCTTTGTTGCCGTGTGTATGTATGAAGTTCAAGCGCGAAGT
TTTTTCCCGTCGTTGCGCGCAGGGAGGTTGGGGGTAATCAACATGCGATA
GCTGCCGACTTCTTCCGAGGCTGTTGAATTGAGAAAGAAAACGGAATGTC
TCTCCTCTTTACAGGAGAAGGATGCCGACGCCCGAGCCTCTGTGCCCGAG
AAACCTACAGCGGATTGCCCCGTCAGCGCGGCCATGTCACCGTTGGTGTT
CGGTTGCGACGCCGTTGAGAACAACAACAGGAGCTGGTTCCAGGCTCGCA
GCGGGTAACAAGAGCCAAGGACGACCGCGACGAGCACATAATCATCATTA
GAGTCAGTTGGACCGGTATGGACATTAGAAGGTACCTGACTGGAGACCGG
AACGGTTTTGTAATGTGAAGACAGCAACAGCGCAGCAACAGCGCAGCAAC
AACAAAAGTCTTACAAACATGTGTTGAGGGAGGTCGTTGTTTCTTCGAGA
TCAAATGCTGAGAGAGGCGTCCCGTCGGTTTTGTCGAGTGTGTATGTCCA
GAAAACAAGAGGCAGGAGATATTTCATAAAATGTTTCACTGGGTGAATGT
GTGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77:14127..18681+

>mRNA_Ecto-sp13_S_contig77.18934.1 ID=mRNA_Ecto-sp13_S_contig77.18934.1|Name=mRNA_Ecto-sp13_S_contig77.18934.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77:14127..18681+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCCTTCGGAGCTCGCGGAGCTGGGTATGGACTGGACGCGGAACT
TGCTCGTCAGAGAGAGGCGAAGTATGACCATTCCGCGGAAAACCAAGCGC
GGGCATGGATCGAAGCAGTGACAGGCGAGCGGGTTGTTGGGCCCTTCGGA
GATGCCTTGAGAGATGGCGTCAATATCTGCAAGCTTGTCAACACTATCAA
GCCGGGTGCGGTGCGGAAGATCAACGAGTCGAGGATGCCCTTCAAACAGA
TGGAAAATATCTCCAACTTTCTGAAATCCTGCAGGGCGATGGGAGTCGCC
GAGCATTCGCTGTTCGAGACGGTGGATCTGTACGAAGGAAAAGACATTGG
GCTAGTGGTGCGCTGCATTTTTGCCTTGGGAAGCGCCGTTCAGGGGACTT
GCCCGGAGTACACCGGGCCGACCTTAGGCGCCAAGCCTCATCAGGAAAAC
AAGCGGATTTTCAACAAGCAGCAGAAGCAACAGGCCAAAGTCAACGCCTC
GTTCTCCAAGCTCGGCATGGGTTCGGCCCACAGCATGGAGCATAATCAAT
GTATTTCTAAACCAGGCATTTGCTTTGGAGCCGAGAACGCTGGCGCTGGG
GACACCACCACCGTCGGCAAACTAGCGAAGGGCTCACATGGTATTCAAGA
GCGCCTTCCGGTGAATCAATCCAGGAGCATTACGTTTGGCAACGACAAGG
TCGGAACAGGTGACACCACAACCATCGGCAAGCTCACTCAGGGTTCACAT
GGTATTCAAGAACGCCTTCCGGTGGATCAACTTAGGATCACTACGTTTGG
CAACGATAAACGCGGAACCGGTGACACGAAGGTCATGACAAAGCCCGGCT
TGAGCTCATACGGAATCATGGACCGCAACTCCGTTTCTAAAGCCAACGAC
GTCACTTTCTGTGCCTCAGCCAGTCAGGCCACGCCCCTCGATGGAAACAA
GGAGAAGGATGCCGACGCCCGAGCCTCTGTGCCCGAGAAACCTACAGCGG
ATTGCCCCGTCAGCGCGGCCATGTCACCGTTGGTGTTCGGTTGCGACGCC
GTTGAGAACAACAACAGGAGCTGGTTCCAGGCTCGCAGCGGGTAA
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