mRNA_Ecto-sp13_S_contig77.18933.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77.18933.1
Unique NamemRNA_Ecto-sp13_S_contig77.18933.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77.18933.1 vs. uniprot
Match: A0A6H5KLN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN5_9PHAE)

HSP 1 Score: 580 bits (1495), Expect = 7.500e-206
Identity = 311/359 (86.63%), Postives = 322/359 (89.69%), Query Frame = 2 
Query:    2 SIFIGHFSLNMKASLVFTINVILSVAATSADECYDICADVKKSVGFKAGCSEFRNSLPRPKVSSKCHTGFKAAVERNCHDACVNGGRLQPFLVERRLDEACNGAXXXXXXXXXXXXXXXXYRSGVKDMTTSLGKLMAEASPPVITALKGDTLSRQAAHKTHAVATDDSKTVEGISEEPI----DAIARPSQMADLSYNGKDTPVPEEKEHGEAQILESQGGLQTDAQAISDEPRLAADDIYNVEDKPDLERDADKALIAPDGEMDAHQELPEIKDGEHKGEDNYMWIEHEEGNVLLSLPITVDNVLKELVIFEGDQPLDVVLGFCRDNMPEEGPACADELIRVVQDKISTGKAPQEEYI 1066
            SIFIGHFSLNMKA LVFTINVILSV ATSADEC+DICA+VKKSVGFKAGCSEFRNSLPRPKVSSKCHTGFKAAVERNCHDACVNGGRLQPFLVERRLDEACNGA        XXXXXXXXYRSGVKDMTTSLGKLMAEASP VITALKG+TLSRQAA KTH VATDDSKTVEG SE PI    DAIARPSQMADLS +G DTPVPEEKEHGEAQ LES+GGLQTDAQ I DEP LAA DIY VED+PDL RDAD ALIAPDGEMDA  +L  IKDGE+KGEDNYMWIE E+ NVLLSLPITVDNVLKELVI +GDQPLDVVL FCR+NMPEEGPACADELIRVVQDKISTGKAPQEEYI
Sbjct:   14 SIFIGHFSLNMKAPLVFTINVILSVTATSADECHDICANVKKSVGFKAGCSEFRNSLPRPKVSSKCHTGFKAAVERNCHDACVNGGRLQPFLVERRLDEACNGALNDTPRPLXXXXXXXXYRSGVKDMTTSLGKLMAEASPAVITALKGNTLSRQAAQKTHVVATDDSKTVEGTSEGPIAFAEDAIARPSQMADLSDHGNDTPVPEEKEHGEAQDLESKGGLQTDAQVIGDEPPLAAGDIYKVEDEPDLARDADSALIAPDGEMDAQHKLAAIKDGENKGEDNYMWIEDEKENVLLSLPITVDNVLKELVIVKGDQPLDVVLAFCRENMPEEGPACADELIRVVQDKISTGKAPQEEYI 372
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BLAST of mRNA_Ecto-sp13_S_contig77.18933.1 vs. uniprot
Match: D7FJ15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ15_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 9.240e-118
Identity = 204/345 (59.13%), Postives = 214/345 (62.03%), Query Frame = 2 
Query:   32 MKASLVFTINVILSVAATSADECYDICADVKKSVGFKAGCSEFRNSLPRPKVSSKCHTGFKAAVERNCHDACVNGGRLQPFLVERRLDEACNGAXXXXXXXXXXXXXXXXYRSGVKDMTTSLGKLMAEASPPVITALKGDTLSRQAAHKTHAVATDDSKTVEGISEEPIDAIARPSQMADLSYNGKDTPVPEEKEHGEAQILESQGGLQTDAQAISDEPRLAADDIYNVEDKPDLERDADKALIAPDGEMDAHQELPEIKDGEHKGEDNYMWIEHEEGNVLLSLPITVDNVLKELVIFEGDQPLDVVLGFCRDNMPEEGPACADELIRVVQDKISTGKAPQEEYI 1066
            MKA L FT+NVILSV ATSADEC+DICADVKKSVGFKAGCSEFRNSLPRPK                                                                                P+  A                         EG       AIARPSQMADLSY+GKDTPVPEEKEHGE Q+LES+GGLQTDAQA+ D P LA  DIY VED+PDL RDAD ALIAPDGE DA  ELPEIKDGE+KGEDNYMWIEHEE NVLLSLPITVDNV+KELVIFEGDQPLDVVL FCRDNMPEEGPACADELIRVVQDKISTGKAPQEEYI
Sbjct:    1 MKAPLAFTVNVILSVTATSADECHDICADVKKSVGFKAGCSEFRNSLPRPK--------------------------------------------------------------------------------PIAFA-------------------------EG-------AIARPSQMADLSYHGKDTPVPEEKEHGEIQVLESKGGLQTDAQAMGDGPPLAVGDIYKVEDEPDLARDADSALIAPDGETDAQHELPEIKDGENKGEDNYMWIEHEEENVLLSLPITVDNVMKELVIFEGDQPLDVVLAFCRDNMPEEGPACADELIRVVQDKISTGKAPQEEYI 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77.18933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLN5_9PHAE7.500e-20686.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ15_ECTSI9.240e-11859.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77contigEcto-sp13_S_contig77:7870..10420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1241
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_004800.1
Cds size1038
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77.18933.1prot_Ecto-sp13_S_contig77.18933.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77 7901..10248 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464040.4121008-UTR-Ecto-sp13_S_contig77:7869..79001681464040.4121008-UTR-Ecto-sp13_S_contig77:7869..7900Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig77 7870..7900 +
1681464040.4692955-UTR-Ecto-sp13_S_contig77:10248..104201681464040.4692955-UTR-Ecto-sp13_S_contig77:10248..10420Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig77 10249..10420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464040.4233975-CDS-Ecto-sp13_S_contig77:7900..80531681464040.4233975-CDS-Ecto-sp13_S_contig77:7900..8053Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 7901..8053 +
1681464040.4341958-CDS-Ecto-sp13_S_contig77:8235..84661681464040.4341958-CDS-Ecto-sp13_S_contig77:8235..8466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 8236..8466 +
1681464040.442938-CDS-Ecto-sp13_S_contig77:8913..90301681464040.442938-CDS-Ecto-sp13_S_contig77:8913..9030Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 8914..9030 +
1681464040.4515915-CDS-Ecto-sp13_S_contig77:9502..98261681464040.4515915-CDS-Ecto-sp13_S_contig77:9502..9826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 9503..9826 +
1681464040.4604368-CDS-Ecto-sp13_S_contig77:10035..102481681464040.4604368-CDS-Ecto-sp13_S_contig77:10035..10248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77 10036..10248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77.18933.1

>prot_Ecto-sp13_S_contig77.18933.1 ID=prot_Ecto-sp13_S_contig77.18933.1|Name=mRNA_Ecto-sp13_S_contig77.18933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=346bp
MKASLVFTINVILSVAATSADECYDICADVKKSVGFKAGCSEFRNSLPRP
KVSSKCHTGFKAAVERNCHDACVNGGRLQPFLVERRLDEACNGALKDTPR
PLCHDACVRGYRSGVKDMTTSLGKLMAEASPPVITALKGDTLSRQAAHKT
HAVATDDSKTVEGISEEPIDAIARPSQMADLSYNGKDTPVPEEKEHGEAQ
ILESQGGLQTDAQAISDEPRLAADDIYNVEDKPDLERDADKALIAPDGEM
DAHQELPEIKDGEHKGEDNYMWIEHEEGNVLLSLPITVDNVLKELVIFEG
DQPLDVVLGFCRDNMPEEGPACADELIRVVQDKISTGKAPQEEYI*
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mRNA from alignment at Ecto-sp13_S_contig77:7870..10420+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77.18933.1 ID=mRNA_Ecto-sp13_S_contig77.18933.1|Name=mRNA_Ecto-sp13_S_contig77.18933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2551bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77:7870..10420+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAATCTTCATCGGACACTTCTCGTTGAACATGAAGGCTTCCTTGGTAT
TTACCATCAACGTGATACTTTCGGTGGCGGCGACCAGCGCTGATGAATGC
TACGATATTTGTGCGGACGTGAAAAAGAGCGTTGGTTTCAAGGCTGGATG
TAGCGAGTTCCGCAACTCGCTGCCGAGACCGAAGGTGTGGAGGTCAGATA
TGTAATCTGCGTCATGTTTCGGCTTGTCTCGCAAATATGATACTACCCTG
CTCTCCATGGGAAGAACTGGAAGTAGGTATGCCGGGGGGGATCAAGCATA
GCGCACTCTGTGTTCGGGTGATGCTCCCAGGTGTGAAACACACCGTTCAA
TGTGCGTCTTTACCAGGTTTCAAGCAAATGTCACACGGGATTCAAGGCGG
CTGTCGAAAGGAACTGCCACGACGCCTGTGTAAATGGAGGACGCCTTCAG
CCATTCCTTGTCGAGCGCCGGCTAGACGAAGCATGCAACGGTGCACTGAA
GGATACTCCGAGGCCGCTCTGCCACGACGCTTGCGTTCGAGGTTATCGTT
CAGGCGTCAAGGACATGACTACTTCGCTCGGGAAACTTATGGCCGAGGTT
CGGACCTTCCCCCAACCACGTCGCGCACGACCAATCGCAAAATCTGAGGT
CCAACGGACATTCGACAGACAGAGTACTTTTATCCTTCCTCGATTGAAAC
AACACGAACAAGCACAATGGCGGAGCGTATGATTACGATAGTGTCATCTA
GTCTCGTCGACTTCAACTCTGTTTTCATACGTAGACTAGACTACATCGCG
AAAGTTGTTCGTGGTACATTTTTCGAAGTTCGTGGAACGTTGCCAAGGTA
CAGTATAAAATAGGCGTGTCTTAAGCCAGATGTGCCCGTGCCGATGCTTG
TTCATTGAAGGGACTATCCGCTTGCACCTAGTTTTTGTATGTGTACATGT
TAAGAGCCTACAGCCTGTGGCAGCCAACTTTCACCGGCACCCGCTCCGTC
ATTTCATCACTCGCCCTGCTGATACGTGTGTTTGGGTCGTGTAGGCATCT
CCGCCGGTCATCACAGCGTTGAAGGGAGATACTCTGTCCCGCCAAGCCGC
CCACAAAACGCATGCCGTTGCCACTGACGATTCCAAGACTGTCGAAGGAA
TATCAGAGGAGGTAGGATAATACCTCCTCCCGTGGAGAGGCCAAGATGTA
AAAACATTTCTGTAGTGGGTGAACTCATGCACATGCGCACAGTACAACAT
CCAGAGACCTAACGGATACTAGGCTATTGCCAACGGTCCCGAGGGGGTTG
TCAAGACCTATCCGCCGAACGCTGCAAGTATTCAGCTAGAGCTTAGAAGA
AATGATTCGCTGCCTACCCTAGTTTCATGTCATGACTGGAACATAGCGTG
CCCGTGCATGAATTTTAGACCTGAGAGGTGATGTTGTGGGTTCGCTGGCT
GATGTTACTCTACGCAGGTAGTTACTTTGATGTCTCGGGCTTAGTGGCTT
ACTCTTCCAACAACGTGACATGCAGCGCTTCTTTTGTTTCAATGAAACAC
GAGCAACACACGATGCATGACATTCTGCCCTGCGTCTCTCCGACCGTGCT
CTTTGTTGTTTTCGATTTTTCGTCTGTCGTTAGCCGATCGACGCTATTGC
CAGGCCATCGCAGATGGCTGACCTGAGTTATAACGGAAAAGACACCCCTG
TCCCAGAAGAAAAAGAGCACGGAGAGGCCCAGATTCTCGAAAGTCAGGGC
GGACTGCAAACAGATGCTCAGGCCATAAGTGATGAACCCCGGCTCGCCGC
CGACGACATTTACAACGTTGAAGACAAACCGGACCTTGAGAGGGATGCTG
ATAAGGCGTTGATTGCGCCAGACGGAGAAATGGACGCACATCAGGAACTG
CCGGAAATCAAAGATGGAGAACATAAAGGCGAAGACAACTACATGTGGAT
TGAACATGTGAGGCATCTTGCACGTGTATATCGTAAGGTTTGTCTTGTGC
AGTGTAGTTCTCCTCGCTTGACCTGTTCTGCATCTGGTCGAGGTGATAAC
CTTTGCGCCGAATCTCTCTCTCTATGACGACGCGTAATTCAAGCTTTTTT
TGGTGATCACGCATTTTCTCAAACTAACTGCAGTGCTCCTCGCTTGTCGT
GTTTTTGGTTTCCCAGGAGGAGGGAAATGTGCTTCTTTCACTTCCAATCA
CGGTGGACAACGTTTTGAAGGAGCTCGTGATCTTCGAAGGCGATCAACCG
CTGGACGTAGTGCTCGGGTTTTGTAGGGATAATATGCCGGAAGAAGGTCC
CGCCTGCGCAGATGAACTCATTCGCGTGGTACAAGACAAGATTTCTACCG
GGAAGGCACCGCAAGAGGAGTACATTTAGAGTGCTGTAACTCTACAGGAA
GGCTAGTACGTCCACAGCAATCGTTTTCTCATTTGCGGGGACCACACATT
TCGGACACCTAATAGCTCTTTTCAGGCGTTGGAGTTTGAAGCATGGAACC
AACCCTTTAAGTGGGATTGACGGTGATGCCTAGAAAAACGGGTGGTAGTT
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77:7870..10420+

>mRNA_Ecto-sp13_S_contig77.18933.1 ID=mRNA_Ecto-sp13_S_contig77.18933.1|Name=mRNA_Ecto-sp13_S_contig77.18933.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77:7870..10420+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCTTCCTTGGTATTTACCATCAACGTGATACTTTCGGTGGCGGC
GACCAGCGCTGATGAATGCTACGATATTTGTGCGGACGTGAAAAAGAGCG
TTGGTTTCAAGGCTGGATGTAGCGAGTTCCGCAACTCGCTGCCGAGACCG
AAGGTTTCAAGCAAATGTCACACGGGATTCAAGGCGGCTGTCGAAAGGAA
CTGCCACGACGCCTGTGTAAATGGAGGACGCCTTCAGCCATTCCTTGTCG
AGCGCCGGCTAGACGAAGCATGCAACGGTGCACTGAAGGATACTCCGAGG
CCGCTCTGCCACGACGCTTGCGTTCGAGGTTATCGTTCAGGCGTCAAGGA
CATGACTACTTCGCTCGGGAAACTTATGGCCGAGGCATCTCCGCCGGTCA
TCACAGCGTTGAAGGGAGATACTCTGTCCCGCCAAGCCGCCCACAAAACG
CATGCCGTTGCCACTGACGATTCCAAGACTGTCGAAGGAATATCAGAGGA
GCCGATCGACGCTATTGCCAGGCCATCGCAGATGGCTGACCTGAGTTATA
ACGGAAAAGACACCCCTGTCCCAGAAGAAAAAGAGCACGGAGAGGCCCAG
ATTCTCGAAAGTCAGGGCGGACTGCAAACAGATGCTCAGGCCATAAGTGA
TGAACCCCGGCTCGCCGCCGACGACATTTACAACGTTGAAGACAAACCGG
ACCTTGAGAGGGATGCTGATAAGGCGTTGATTGCGCCAGACGGAGAAATG
GACGCACATCAGGAACTGCCGGAAATCAAAGATGGAGAACATAAAGGCGA
AGACAACTACATGTGGATTGAACATGAGGAGGGAAATGTGCTTCTTTCAC
TTCCAATCACGGTGGACAACGTTTTGAAGGAGCTCGTGATCTTCGAAGGC
GATCAACCGCTGGACGTAGTGCTCGGGTTTTGTAGGGATAATATGCCGGA
AGAAGGTCCCGCCTGCGCAGATGAACTCATTCGCGTGGTACAAGACAAGA
TTTCTACCGGGAAGGCACCGCAAGAGGAGTACATTTAG
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