mRNA_Ecto-sp13_S_contig7698.18931.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7698.18931.1
Unique NamemRNA_Ecto-sp13_S_contig7698.18931.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7698.18931.1 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 4.740e-84
Identity = 164/171 (95.91%), Postives = 166/171 (97.08%), Query Frame = 1 
Query:    1 EEARRSEVEANLLAEQEAGVAAVSAVADSQKRSLQEQLDNAGATVEEKQAMMNALTEDQKTIEGILEGERVRMEESFKSAAAARKARDEKHAEEDAVEECQTKAELLHKQNAQIKELRRKHEAAQLAVAGAASAADDDGDQDSQGQEKADGSGDETDGEDERGVIAALRKV 513
            EEARRSE+EANLLAEQEAGVAAVSAVADSQKRSLQEQLDNAGATVEEKQAMMNALTEDQKTIEGILEGERVRMEESFKSAAAARKARDEKHAEEDAVEECQTKAELLHKQNAQIKELRRKHEAAQL V GAASAADDDGDQD QGQ+K DGSGDETDGEDERGVIAALRK 
Sbjct: 4459 EEARRSEIEANLLAEQEAGVAAVSAVADSQKRSLQEQLDNAGATVEEKQAMMNALTEDQKTIEGILEGERVRMEESFKSAAAARKARDEKHAEEDAVEECQTKAELLHKQNAQIKELRRKHEAAQLVVTGAASAADDDGDQDPQGQDKTDGSGDETDGEDERGVIAALRKA 4629
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BLAST of mRNA_Ecto-sp13_S_contig7698.18931.1 vs. uniprot
Match: A0A6H5KWQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ4_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 2.580e-75
Identity = 152/167 (91.02%), Postives = 155/167 (92.81%), Query Frame = 1 
Query:   13 RSEVEANLLAEQEAGVAAVSAVADSQKRSLQEQLDNAGATVEEKQAMMNALTEDQKTIEGILEGERVRMEESFKSAAAARKARDEKHAEEDAVEECQTKAELLHKQNAQIKELRRKHEAAQLAVAGAASAADDDGDQDSQGQEKADGSGDETDGEDERGVIAALRKV 513
            RSE+EANLLAEQEAGVAAVSAVADSQKRSLQ+QLDNAGATVEEKQAMMNALTEDQKTIEGILEGERVRMEESFKSAA ARKARDEKHAEEDAVEECQTKAELLHKQNAQIKELRRKHEAAQLAVA         GDQD QGQEKADGSGD+TDGEDERGVIAALRK 
Sbjct:  855 RSEIEANLLAEQEAGVAAVSAVADSQKRSLQKQLDNAGATVEEKQAMMNALTEDQKTIEGILEGERVRMEESFKSAAVARKARDEKHAEEDAVEECQTKAELLHKQNAQIKELRRKHEAAQLAVAAXXXXXXXXGDQDPQGQEKADGSGDKTDGEDERGVIAALRKA 1021
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BLAST of mRNA_Ecto-sp13_S_contig7698.18931.1 vs. uniprot
Match: A0A6H5KDL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL2_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 3.710e-57
Identity = 124/167 (74.25%), Postives = 131/167 (78.44%), Query Frame = 1 
Query:   13 RSEVEANLLAEQEAGVAAVSAVADSQKRSLQEQLDNAGATVEEKQAMMNALTEDQKTIEGILEGERVRMEESFKSAAAARKARDEKHAEEDAVEECQTKAELLHKQNAQIKELRRKHEAAQLAVAGAASAADDDGDQDSQGQEKADGSGDETDGEDERGVIAALRKV 513
            RSE++ANLL EQEAGV AV+ VADSQK+SLQEQLDNAG TVEEKQAM+NALTEDQKTIEGILEGERVRME SFK+AAAARKARDEKHAEE                          HEAAQLAVAGAAS  DDDGDQD QGQEKADGSGDETD ED+RGVIAALRK 
Sbjct:  107 RSEIKANLLVEQEAGVVAVAVVADSQKKSLQEQLDNAGVTVEEKQAMINALTEDQKTIEGILEGERVRMEGSFKNAAAARKARDEKHAEE-------------------------WHEAAQLAVAGAASVVDDDGDQDPQGQEKADGSGDETDREDDRGVIAALRKA 248
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7698.18931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR26_ECTSI4.740e-8495.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWQ4_9PHAE2.580e-7591.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDL2_9PHAE3.710e-5774.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7698contigEcto-sp13_S_contig7698:5277..6440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score285.8
Seed ortholog evalue1.3e-74
Seed eggNOG ortholog2880.D8LR26
Model size517
KEGG koko:K16726,ko:K17751
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0161@2759,KOG1217@1,KOG1217@2759,KOG3529@1,KOG3529@2759
Cds size516
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464040.2639053-CDS-Ecto-sp13_S_contig7698:5276..54231681464040.2639053-CDS-Ecto-sp13_S_contig7698:5276..5423Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7698 5277..5423 +
1681464040.2787144-CDS-Ecto-sp13_S_contig7698:5600..57521681464040.2787144-CDS-Ecto-sp13_S_contig7698:5600..5752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7698 5601..5752 +
1681464040.2877328-CDS-Ecto-sp13_S_contig7698:6223..64401681464040.2877328-CDS-Ecto-sp13_S_contig7698:6223..6440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7698 6224..6440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7698.18931.1prot_Ecto-sp13_S_contig7698.18931.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7698 5277..6440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7698.18931.1

>prot_Ecto-sp13_S_contig7698.18931.1 ID=prot_Ecto-sp13_S_contig7698.18931.1|Name=mRNA_Ecto-sp13_S_contig7698.18931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
EEARRSEVEANLLAEQEAGVAAVSAVADSQKRSLQEQLDNAGATVEEKQA
MMNALTEDQKTIEGILEGERVRMEESFKSAAAARKARDEKHAEEDAVEEC
QTKAELLHKQNAQIKELRRKHEAAQLAVAGAASAADDDGDQDSQGQEKAD
GSGDETDGEDERGVIAALRKV*
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mRNA from alignment at Ecto-sp13_S_contig7698:5277..6440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7698.18931.1 ID=mRNA_Ecto-sp13_S_contig7698.18931.1|Name=mRNA_Ecto-sp13_S_contig7698.18931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1164bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7698:5277..6440+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGAAGCCCGCAGGTCCGAGGTTGAGGCCAATTTGCTGGCGGAGCAGGA
GGCCGGCGTCGCAGCGGTGTCGGCGGTGGCGGACAGCCAGAAGAGGAGCC
TCCAAGAGCAGCTCGACAACGCGGGGGCGACCGTGGAGGAGAAACAGGTA
TTTCAGAAATGCATTAGCTCTGGTGCGTACTCGTGAGAGTATGTCGTCTG
CGGACGTGCATGTGTTTACGCGGATGAAAGCTGGGCGTGAATGACCCCAC
GACGCATAGTCCACCATAATCTAAAAGAAACGAAGTATCTTTTTCCATGT
ACTCTATCAAAAACCCACGAACAGGCTATGATGAACGCTCTAACCGAAGA
CCAAAAGACGATCGAGGGCATCCTAGAAGGCGAGCGGGTGAGGATGGAAG
AGAGCTTCAAGAGTGCCGCGGCGGCGCGTAAGGCGAGGGACGAGAAGCAC
GCTGAAGAAGATGCCGTCGAAGAATGGTGCGACAAATCAACAGACATCAT
TTGTAGACCACAAGTGAAAGGACAGTATCCTCTCTCACTCTCCCTGTATA
ACCCATATCGAATTTCGCTGTGTGGCAGTGACTTGGTCGTTGGTCGTGTC
GATAGTCGGGTGTCAAATGCGAGTGGGGTACTGTTTTACCATAGTTTAGC
ATCAATACTTGCGTCTCTCCCTTCTTGGTTCCAACATCGATGCTGGTCAC
TATTTGGATTTTCTTCGAGCGTTCACGTGCTGAGGTGGGGAAACCACTCA
TTGTTGAAAACAATCGTTTTGGAAAGTGGATGCGCTACAGTAAAAAATTA
AAGAACTTGATGCCGTCACACCTCGCCGTTTATGTACTTGCACGTGGACG
TGCATTCTCTTAGATTCATACCTTAGCGGGTGCATCATGCTTCTCCGCCT
ACCCTACCTTCCTCTCCGTCTGTTTCTGGCAAATGTTCGTGTCTCAGCCA
AACCAAGGCAGAACTCCTGCATAAGCAAAACGCGCAGATCAAAGAGCTAC
GGCGCAAGCACGAAGCGGCGCAACTGGCGGTTGCCGGAGCGGCGTCCGCC
GCGGATGACGATGGCGATCAGGATTCACAAGGGCAAGAGAAGGCCGACGG
CAGCGGGGACGAAACGGACGGCGAAGACGAAAGAGGGGTGATCGCGGCGT
TGAGGAAGGTATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7698:5277..6440+

>mRNA_Ecto-sp13_S_contig7698.18931.1 ID=mRNA_Ecto-sp13_S_contig7698.18931.1|Name=mRNA_Ecto-sp13_S_contig7698.18931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7698:5277..6440+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGAAGCCCGCAGGTCCGAGGTTGAGGCCAATTTGCTGGCGGAGCAGGA
GGCCGGCGTCGCAGCGGTGTCGGCGGTGGCGGACAGCCAGAAGAGGAGCC
TCCAAGAGCAGCTCGACAACGCGGGGGCGACCGTGGAGGAGAAACAGGCT
ATGATGAACGCTCTAACCGAAGACCAAAAGACGATCGAGGGCATCCTAGA
AGGCGAGCGGGTGAGGATGGAAGAGAGCTTCAAGAGTGCCGCGGCGGCGC
GTAAGGCGAGGGACGAGAAGCACGCTGAAGAAGATGCCGTCGAAGAATGC
CAAACCAAGGCAGAACTCCTGCATAAGCAAAACGCGCAGATCAAAGAGCT
ACGGCGCAAGCACGAAGCGGCGCAACTGGCGGTTGCCGGAGCGGCGTCCG
CCGCGGATGACGATGGCGATCAGGATTCACAAGGGCAAGAGAAGGCCGAC
GGCAGCGGGGACGAAACGGACGGCGAAGACGAAAGAGGGGTGATCGCGGC
GTTGAGGAAGGTATGA
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