mRNA_Ecto-sp13_S_contig12252.1893.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12252.1893.1 vs. uniprot
Match: A0A6H5JA20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA20_9PHAE) HSP 1 Score: 793 bits (2048), Expect = 3.100e-280 Identity = 497/561 (88.59%), Postives = 505/561 (90.02%), Query Frame = 1
Query: 1 QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPTGCLSEELQPEAAGSPPSDESKTPEETSSITVSGGVQQQGMKRERDSCSSEESELSSLPAPVVIGDDCKLSPAIERLVLDHRQEQXXXXXXXXXXXXXXX--QRVSFTDHLEVSASGGTSTMARSSSIFRXXXXXXXXXXXXXXXXXSCGRTKPPALTWSADGEEAGGRRVGGNSGGINPLKSPASGGLRSPGTRMLGMGGEGGSGFPSR----------------------VSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDSDDDGGHDXXXXXXXXXXXELFEAADNLDLGAVDLCATGKGADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRVAVSPRAPSPMHKLTTFGTLPSGFSSSSSRTSPRASGTTXXXXXMTAATTTNPFALKPGVSSGVRLRTPSSRSRAEVRSAVKTKAKTVTRRRMSAERDAGTARDRLLSSDNTAYGRGKTPLARSMSVYIPSSRSQTTPVHRASKTPTVKSSRRALKSPGVRGFTRGAFFG 1611
QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPTG L EEL P+AAGSPPSDESKTPEETSSITVSGGVQQQGMKRERDSCSSEESELSSLPAPVVIGDDCKLSPAIERLVLD RQE XXXXXXXXXXXXXXX QRVSFTDHLEVSASGGTSTMARSSSI R XXXXXXXXSCGRTKPPALTWSAD E+A G RVGGNSGGINPLKSPASGGL SPGTRMLG+GGEGGSGFPSR VSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDS XXXXXXXXXXXELFEAADNLDLGAVDLCATG GADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRR+AVSPRAPSPMHKLTTFG+LPSGFSSSSSRTSPRAS XXXXX A+TT+NPFALKPGVSSGVRLRTPSSRSRAEVRSAVKTKAKTVTRRRMSAERDAGTARDRLLS+DNTAYGRGKTPLARSMSVYIPSSRSQTTPVHRASKTPTVKSSRRALKSPGVRGFTRGAFFG
Sbjct: 278 QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPTGYLPEELPPKAAGSPPSDESKTPEETSSITVSGGVQQQGMKRERDSCSSEESELSSLPAPVVIGDDCKLSPAIERLVLDPRQEXXXXXXXXXXXXXXXXXXQRVSFTDHLEVSASGGTSTMARSSSIVRSTALTVATGXXXXXXXXSCGRTKPPALTWSADREDACGSRVGGNSGGINPLKSPASGGLSSPGTRMLGIGGEGGSGFPSRKNTHASCLGKTKHPLDFLYARKVSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDSXXXXXX-XXXXXXXXXXXELFEAADNLDLGAVDLCATGNGADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRMAVSPRAPSPMHKLTTFGSLPSGFSSSSSRTSPRASA--XXXXXXXASTTSNPFALKPGVSSGVRLRTPSSRSRAEVRSAVKTKAKTVTRRRMSAERDAGTARDRLLSADNTAYGRGKTPLARSMSVYIPSSRSQTTPVHRASKTPTVKSSRRALKSPGVRGFTRGAFFG 835
BLAST of mRNA_Ecto-sp13_S_contig12252.1893.1 vs. uniprot
Match: D7FGW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW6_ECTSI) HSP 1 Score: 580 bits (1494), Expect = 3.400e-203 Identity = 336/382 (87.96%), Postives = 341/382 (89.27%), Query Frame = 1
Query: 466 MARSSSIFRXXXXXXXXXXXXXXXXXSCGRTKPPALTWSADGEEAGGRRVGGNSGGINPLKSPASGGLRSPGTRMLGMGGEGGSGFPSRVSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDSDDDGGHDXXXXXXXXXXXELFEAADNLDLGAVDLCATGKGADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRVAVSPRAPSPMHKLTTFGTLPSGFSSSSSRTSPRASGTTXXXXXMTAATTTNPFALKPGVSSGVRLRTPSSRSRAEVRSAVKTKAKTVTRRRMSAERDAGTARDRLLSSDNTAYGRGKTPLARSMSVYIPSSRSQTTPVHRASKTPTVKSSRRALKSPGVRGFTRGAFFG 1611
MARS++IFR SCGRTKPPALTWSADGEEAGGRRVGGNSGGINPLKSPASGGLRSPGTRMLG+GGEGGSGFPSRVSWEE S AEMHAQHAVSFSGIPDSDD XXXXXXXXXXX LFEAADNLDLGAVDLCATGKGADGQTTYKDQDE+RLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRR+AVSPRAPSPMHKLTTFGTLPSGFSSSSSRTSPR S TT MTAATTTNPFALKPGVSSGVRLRTPSSRSRAEVRSAVKTKAKTVTRRRMSAERDAGTARDRLLSSDNTAYGRGKTPLARSMSVYIPSSRSQTTPVHRASKTPTVKSSRR LKSPGVRGFTRGAFFG
Sbjct: 1 MARSTNIFRSTTTTVAKGGGSGS---SCGRTKPPALTWSADGEEAGGRRVGGNSGGINPLKSPASGGLRSPGTRMLGIGGEGGSGFPSRVSWEEGSXXXXXXXXXAEMHAQHAVSFSGIPDSDDXXXXXXXXXXXXXXXXXLFEAADNLDLGAVDLCATGKGADGQTTYKDQDEVRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRMAVSPRAPSPMHKLTTFGTLPSGFSSSSSRTSPRTSATTITS--MTAATTTNPFALKPGVSSGVRLRTPSSRSRAEVRSAVKTKAKTVTRRRMSAERDAGTARDRLLSSDNTAYGRGKTPLARSMSVYIPSSRSQTTPVHRASKTPTVKSSRRTLKSPGVRGFTRGAFFG 377
BLAST of mRNA_Ecto-sp13_S_contig12252.1893.1 vs. uniprot
Match: D7FGW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW7_ECTSI) HSP 1 Score: 108 bits (271), Expect = 1.110e-22 Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 1
Query: 1 QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPTGCLSEELQPEAAGSPPSDESKTPEETSSI 198
QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLP G LSEEL PEAAG PPSDESKTPEETSS+
Sbjct: 237 QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPVGYLSEELPPEAAGFPPSDESKTPEETSSM 302
BLAST of mRNA_Ecto-sp13_S_contig12252.1893.1 vs. uniprot
Match: A0A6H5JCK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK0_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 6.570e-13 Identity = 63/133 (47.37%), Postives = 76/133 (57.14%), Query Frame = 1
Query: 718 GFPSRVSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDSDDDGGHDXXXXXXXXXXXELFEAADNLDLGAVDLCATGKGADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRVAVSP 1116
G S SW+ S+ T GT + Q + SG+P+ + D XXXXXX FE AD+LDLGAV LCA GADGQ TY QD R P + K GVEQ+RFSAALD+FRQEQ+ RR + P
Sbjct: 236 GNTSVASWDVRSEPTLGTDGGTD---QDIAAASGLPEDESD---------XXXXXXXEFEVADSLDLGAVALCAVQTGADGQQTY--QDTARTPQAMRHLTNKLGVEQQRFSAALDYFRQEQRTMGRRPVMPP 354
BLAST of mRNA_Ecto-sp13_S_contig12252.1893.1 vs. uniprot
Match: D7FGX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX8_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 3.050e-12 Identity = 62/130 (47.69%), Postives = 77/130 (59.23%), Query Frame = 1
Query: 727 SRVSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDSDDDGGHDXXXXXXXXXXXELFEAADNLDLGAVDLCATGKGADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRVAVSP 1116
S SW+ S+ T GT + Q + SG+P+ + + XXXXXXX FE AD+LDLGAV LCA GADGQ TY QD R P + K GVEQ+RFSAALD+FRQEQ+ + RR + P
Sbjct: 375 SVASWDVGSEPTLGTDGGTD---QDIAAASGLPEDESE--------XXXXXXXXEFEVADSLDLGAVALCAVETGADGQQTY--QDTARTPQAMRHLTNKLGVEQQRFSAALDYFRQEQRTKGRRPVMPP 491 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12252.1893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12252.1893.1 >prot_Ecto-sp13_S_contig12252.1893.1 ID=prot_Ecto-sp13_S_contig12252.1893.1|Name=mRNA_Ecto-sp13_S_contig12252.1893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=538bp QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPTGCLSEELQPEAAGback to top mRNA from alignment at Ecto-sp13_S_contig12252:319..4603+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12252.1893.1 ID=mRNA_Ecto-sp13_S_contig12252.1893.1|Name=mRNA_Ecto-sp13_S_contig12252.1893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12252:319..4603+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12252:319..4603+ >mRNA_Ecto-sp13_S_contig12252.1893.1 ID=mRNA_Ecto-sp13_S_contig12252.1893.1|Name=mRNA_Ecto-sp13_S_contig12252.1893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1614bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12252:319..4603+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |