mRNA_Ecto-sp13_S_contig7698.18930.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7698.18930.1
Unique NamemRNA_Ecto-sp13_S_contig7698.18930.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7698.18930.1 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 7.420e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 2 
Query:    2 SLETAERQRGESVISKVLDQLIQALAIVGARAETEKAAVDTARIDAEVERRHLEAAVDESIKTMTIAGSADGVPPTSDDLQGMLKEIRTLVSSSGSASAA 301
            SLETAERQRGESVISKVLDQLIQALAIVGARAETEKAAVDTARIDAEVERRHLEAAVDESIKTMTIAGSADGVPPTSDDLQGMLKEIRTLVSSSGSASAA
Sbjct: 4314 SLETAERQRGESVISKVLDQLIQALAIVGARAETEKAAVDTARIDAEVERRHLEAAVDESIKTMTIAGSADGVPPTSDDLQGMLKEIRTLVSSSGSASAA 4413
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BLAST of mRNA_Ecto-sp13_S_contig7698.18930.1 vs. uniprot
Match: A0A6H5KWQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ4_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 2.240e-47
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 2 
Query:    2 SLETAERQRGESVISKVLDQLIQALAIVGARAETEKAAVDTARIDAEVERRHLEAAVDESIKTMTIAGSADGVPPTSDDLQGMLKEIRTLVSSSGSASAA 301
            SLETAERQRGESVISKVLDQLIQALAIVGARAETEKAAVDTARIDAEVERRHLEAAVDESIKTM IAGSADGVPPTSDDLQGMLKEIR LVSSSGSASAA
Sbjct:  719 SLETAERQRGESVISKVLDQLIQALAIVGARAETEKAAVDTARIDAEVERRHLEAAVDESIKTMNIAGSADGVPPTSDDLQGMLKEIRLLVSSSGSASAA 818
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BLAST of mRNA_Ecto-sp13_S_contig7698.18930.1 vs. uniprot
Match: A0A6H5KDL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 8.340e-20
Identity = 64/100 (64.00%), Postives = 64/100 (64.00%), Query Frame = 2 
Query:    2 SLETAERQRGESVISKVLDQLIQALAIVGARAETEKAAVDTARIDAEVERRHLEAAVDESIKTMTIAGSADGVPPTSDDLQGMLKEIRTLVSSSGSASAA 301
            SLETAERQRGESVISKVLDQLIQALAIVGARAETEKA VDTARIDAE                                  GMLKEIRTLV SSGSASAA
Sbjct:    5 SLETAERQRGESVISKVLDQLIQALAIVGARAETEKATVDTARIDAE----------------------------------GMLKEIRTLVPSSGSASAA 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7698.18930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR26_ECTSI7.420e-49100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWQ4_9PHAE2.240e-4798.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDL2_9PHAE8.340e-2064.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7698contigEcto-sp13_S_contig7698:3882..4768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons3
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464040.2090237-CDS-Ecto-sp13_S_contig7698:3881..40231681464040.2090237-CDS-Ecto-sp13_S_contig7698:3881..4023Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7698 3882..4023 +
1681464040.2186604-CDS-Ecto-sp13_S_contig7698:4266..43681681464040.2186604-CDS-Ecto-sp13_S_contig7698:4266..4368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7698 4267..4368 +
1681464040.2276394-CDS-Ecto-sp13_S_contig7698:4709..47681681464040.2276394-CDS-Ecto-sp13_S_contig7698:4709..4768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7698 4710..4768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7698.18930.1prot_Ecto-sp13_S_contig7698.18930.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7698 3882..4768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7698.18930.1

>prot_Ecto-sp13_S_contig7698.18930.1 ID=prot_Ecto-sp13_S_contig7698.18930.1|Name=mRNA_Ecto-sp13_S_contig7698.18930.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
LSRDRRETKGGKRHFQGARPAHSGAGYRRRSCGDGEGGGRHGQDRCGGGT
APPGGGGGREHQDDDHRRVCGRCSAHIRRPPGHAEGNPDVGFFLRLCLRR
*
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mRNA from alignment at Ecto-sp13_S_contig7698:3882..4768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7698.18930.1 ID=mRNA_Ecto-sp13_S_contig7698.18930.1|Name=mRNA_Ecto-sp13_S_contig7698.18930.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=887bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7698:3882..4768+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCTCGAGACCGCCGAGAGACAAAGGGGGGAAAGCGTCATTTCCAAGG
TGCTAGACCAGCTCATTCAGGCGCTGGCTATCGTCGGCGCTCGTGCGGAG
ACGGAGAAGGCGGCGGTCGACACGGCCAGGATAGATGCGGAGGTAGGAAT
GCATGGAACAAACGTGTAGTCGTTGCTTGTCGTTCTTTTTTTGTCTGTTG
TTGTGGATGGTAGTGGTAATGACAAAAGGTTCGCGCTCCTTCCATGTAGT
CGTGAATTTTTCTGCGATCGGTTTACACGCGCAAGTAGTACGGTACAAGC
GTATAGTAGATGCTTCAAGACACAGATGTTGGTCTGCACATCTAACACAT
CATAACACAATGCATCGTGATTGCTTGCACAAAAGGTGGAACGGCGCCAC
CTGGAGGCGGCGGTGGACGAGAGCATCAAGACGATGACCATCGCCGGGTC
TGCGGACGGTGTTCCGCCCACATCCGACGACCTCCAGGTGAAGCTACCCT
ATGCTTGCTGGAACCGTAATTGTCGGTGCAGAACATGTTGGCGTTGCGTG
CTGCAGTTCTCCAGCCTTTTAGACCGCTGTGTTCGCTTGACACCATCTGT
CACTGTTCCTCGCTTGCCTTCCGTCTTTCCCTCACCGATTACTTTTCCCC
TCGTCCTCGGACCTCATATCTCGTCGTCTTCTCAATGCTTACGCGAGGTT
CAACTAGACCCCTATCTCGCGTCCAACGAACAATACTTATCGGTATATAC
GACATCCTCGGACCCGTAGCAAAACGTCTTCACGCCTTTGACATCCTTTG
TTGGAATTCTAAAACAACGAAATGCCAGGGCATGCTGAAGGAAATCCGGA
CGTTGGTTTCTTCCTCCGGCTCTGCCTCCGCCGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7698:3882..4768+

>mRNA_Ecto-sp13_S_contig7698.18930.1 ID=mRNA_Ecto-sp13_S_contig7698.18930.1|Name=mRNA_Ecto-sp13_S_contig7698.18930.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7698:3882..4768+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCTCGAGACCGCCGAGAGACAAAGGGGGGAAAGCGTCATTTCCAAGG
TGCTAGACCAGCTCATTCAGGCGCTGGCTATCGTCGGCGCTCGTGCGGAG
ACGGAGAAGGCGGCGGTCGACACGGCCAGGATAGATGCGGAGGTGGAACG
GCGCCACCTGGAGGCGGCGGTGGACGAGAGCATCAAGACGATGACCATCG
CCGGGTCTGCGGACGGTGTTCCGCCCACATCCGACGACCTCCAGGGCATG
CTGAAGGAAATCCGGACGTTGGTTTCTTCCTCCGGCTCTGCCTCCGCCGC
TAG
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