mRNA_Ecto-sp13_S_contig7697.18929.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7697.18929.1
Unique NamemRNA_Ecto-sp13_S_contig7697.18929.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7697.18929.1 vs. uniprot
Match: A0A6H5JBB4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB4_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.170e-59
Identity = 149/201 (74.13%), Postives = 153/201 (76.12%), Query Frame = -2 
Query:    4 RRTPGTDEQAFRLAVDWQHSRLLAT---------------------GAAAQ-EEAGGSSGGTGTFVAFTSLARAARGREALSAVLSPTSVLTAAHNREQGGCFIVRASAAGVESLXXXXXXXXXXXXXXXXXXXXXSRLFDGFVAVPPSLKLAPSLLDYGSDFDSYGSGVGVVGAGRDGGSSGRGVTGGDSSNAGAPGQAP 540
            RR  G DE+AFRLAVDW HSRLLAT                     GAAAQ EEA G SGG+GTFVAFTS ARAARGREALSAVLSPTSVLTAAHNREQGGCFIVRAS A VESL XXXXXXXXXXXXX       SRLFDGFVAVPPSLKLAPSLLDYGSDF SY SGVGV+G GRDG   GRG+ GGDSSNAG PG AP
Sbjct:    5 RRFFGHDEEAFRLAVDWHHSRLLATXXXXXXXXXXXXXXGDNQGATGAAAQGEEAVGRSGGSGTFVAFTSHARAARGREALSAVLSPTSVLTAAHNREQGGCFIVRASTADVESLLXXXXXXXXXXXXXDGSSGG-SRLFDGFVAVPPSLKLAPSLLDYGSDFSSYDSGVGVLGGGRDG---GRGLAGGDSSNAGPPGLAP 201
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BLAST of mRNA_Ecto-sp13_S_contig7697.18929.1 vs. uniprot
Match: D8LK25_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK25_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 7.710e-57
Identity = 142/200 (71.00%), Postives = 148/200 (74.00%), Query Frame = -2 
Query:    4 RRTPGTDEQAFRLAVDWQHSRLLATG--------------------AAAQEEAGGSSGGTGTFVAFTSLARAARGREALSAVLSPTSVLTAAHNREQGGCFIVRASAAGVESLXXXXXXXXXXXXXXXXXXXXXSRLFDGFVAVPPSLKLAPSLLDYGSDFDSYGSGVGV-VGAGRDGGSSGRGVTGGDSSNAGAPGQAP 540
            RR  G DE+AFRLAVDWQHSRLLAT                     A  ++EA    GGTGTFVAFTS AR ARGREALSA LSPTSVLTAAHNREQGGCFIVRASAA VESL XXXXXXXXXX          SRLFDGFVAVPPSLKLAPSLLDYGSDFD+YG GVGV V  GRDGGS GRG+ GG+SSNAGAPG AP
Sbjct:    5 RRFFGHDEEAFRLAVDWQHSRLLATAXXXXXXXXXXXXXXXXXXXXAEGEKEAVARRGGTGTFVAFTSHARGARGREALSAALSPTSVLTAAHNREQGGCFIVRASAADVESLMXXXXXXXXXXGPDGGISG--SRLFDGFVAVPPSLKLAPSLLDYGSDFDAYGLGVGVDVSGGRDGGS-GRGLAGGESSNAGAPGLAP 201
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7697.18929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBB4_9PHAE1.170e-5974.13Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LK25_ECTSI7.710e-5771.00Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7697contigEcto-sp13_S_contig7697:4290..7226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size580
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_007920.1
Cds size285
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464040.162697-UTR-Ecto-sp13_S_contig7697:4289..45841681464040.162697-UTR-Ecto-sp13_S_contig7697:4289..4584Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7697 4290..4584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464040.1750774-CDS-Ecto-sp13_S_contig7697:4584..48111681464040.1750774-CDS-Ecto-sp13_S_contig7697:4584..4811Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7697 4585..4811 +
1681464040.1839716-CDS-Ecto-sp13_S_contig7697:7168..72261681464040.1839716-CDS-Ecto-sp13_S_contig7697:7168..7226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7697 7169..7226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7697.18929.1prot_Ecto-sp13_S_contig7697.18929.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7697 4585..7226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7697.18929.1

>prot_Ecto-sp13_S_contig7697.18929.1 ID=prot_Ecto-sp13_S_contig7697.18929.1|Name=mRNA_Ecto-sp13_S_contig7697.18929.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MKHPPCSRLWAAVSTDVGDRTADSASRPLAARARLVNATNVPVPPLLPPA
SSCAAAPVARRRECCQSTAKRNACSSVPGVRLEHVVEPLEARARR
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mRNA from alignment at Ecto-sp13_S_contig7697:4290..7226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7697.18929.1 ID=mRNA_Ecto-sp13_S_contig7697.18929.1|Name=mRNA_Ecto-sp13_S_contig7697.18929.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2937bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7697:4290..7226+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGGTGCTTGTCCCGGGGCCCCCGCGTTCGAGCTGTCGCCGCCCGTTA
CACCACGACCACTACTACCACCATCACGACCAGCACCCACAACACCAACA
CCCGAACCGTAAGAATCAAAATCGCTGCCGTAGTCCAACAGGGACGGCGC
CAGCTTAAGGCTGGGGGGGACGGCCACGAACCCGTCGAAGAGGCGGCTAC
TACTACTACTACCATCGGTGCCTCCTGACTCCTCCTCCTCCTCCTCCTCG
AGCAGCAAAAGCAGGGACTCCACACCGGCCGCGCTCGCCCGCACTATGAA
GCACCCGCCCTGCTCCCGGTTGTGGGCCGCCGTCAGCACCGACGTCGGGG
ACAGGACCGCCGATAGCGCCTCGCGGCCCCTGGCGGCGCGGGCGAGGCTC
GTGAACGCGACAAACGTTCCCGTTCCTCCGCTGCTTCCTCCCGCTTCTTC
TTGTGCTGCTGCTCCTGTTGCGAGGAGGCGTGAGTGTTGCCAATCCACCG
CCAAACGAAACGCTTGTTCATCGTGCCCGAAGAAACGCCTGGGCATCATC
ATAGGCAGGAGGGGACCGGCGGGGTTGAAATAGGTCCCACCTTCTCTGTG
TGCAGGTGGAGGATACACAGCGACCCTCCATGTACTCGAAAACGTCGCTT
GCTGTCTGTTCGCTGTGCTTCCGTCACAAGTGTAAATAGAATCCGTTCTT
TTTCGTTCTTACGACCACAAGAGGCTAAACGAAGGCGGCGTCTATCAACG
TCGAGGTACCTTTTAAGCCTCTGCCGAAGGCAGGAAGTTTCTCCGTGCGC
ACCAGGATAAGTCGACGCGAGGCGAGGACCAACCGGAGTGCTCGTGCGAG
GGAGCACTCATCACATCACTCAAATCCAAGAACGACGATAGGCTCGGTGC
GATGAATCATAATCACTGCGCGTGTTTGTGACTGTACGTACATATCCAAC
AAATCAACTCGAAGAAAGGTCGACGAGGGACGACTGACTGACTGCTTCCA
AGACCTGCCGTTAGGCACGCAACTGGAGGCTATGTACGCATCACTGCAGA
GGAAGTATCCTCTATGTCCCCCGGCTGCTGCAATACACGCGCATGCATAC
GTCCCAAAGTACCCAAACAACCGGCCTAACAACGGATCATCTCCAGAACT
TGAGATGAGGGTTCTATTTTTCTGTAAGAACAAGAGTTAGAACAAGGACG
TGGGCCTTCGACCAAGCCGCCAAGGGAAGATCAGGTGCATGGATTAAGAA
CAATAACAATACTAATGTAGTGGCAGCCACTGACGGGAAAGCATCTCCTG
ATTGTCCATTGTCCACCCCCGCCCCTTGGGGCAAAGCGCTCCCTTCATTC
TCTGTCACCGGCGCAATGAGTAGCTAAGCCAGTCACCGCTGTAGTTCGCA
CATCTTCTCCCGCTTGATGTACGGATAGATAACCGAGCGTCATGTCTAAA
TATTTGAGGAGATCTTCGGAAATGGAGATAACTACATACTTGCTGTGGAG
GACAAGCCTTCGAGGCGGCAGGAACAGGCTCCAATGCTACAACCGCAGTG
AGCTTGTCGGAGTCGAAATTTGGGGAGCTAGCGTTAAGCGTTTGACCATC
ATGTGAGGTACACTGGGAATTCCGACTTGGATGTTGACGGATGCTTGTTG
GAATTACACATGAATTTCAAGGAGTAGGAACAAATCGAAAATTCCCTGCT
GGAAACGGAAAAGGCGATTGAGCTACATGCCATACCCGAGGCGTACAATG
CGCACACTTTCACTTTTTCTAGCTGCCCAACGTTGGCTCCGAGAAGCTTC
CAACAGCAGCGGAGCGAAATATAACCCCGAAAGTTTAACTGCAGAAGGGT
CATACGAGGCGGCGAGGACTGAATAATGAAGTGCATTGGTTGGGCTGCCT
TGCTACACTAATTATACTTCTACTTGTTTCCGAAGACCCGGTGGGCAGCA
GAACCCCTGTTTGTCGGGTTGAACACTAACCTTCGCTCCCACAGGGACCC
AATTTTATAATCTACCTCTGAACCAAGTTCGGCCTGCTTGTATTAAAACA
CGTTGTGTCCGGACGACGATACACAAGCAGGTGAGGCGTTCGTGCAGACA
GCCAACTACAATGTTCTACTCACAAGAATATCCACATATCCACACATGCC
CTGAACAGGGACGCTCGACCAACCAGAGGGCGTGAAACCGCGTGGATAGG
AAGTAACTAACAGAGCCGTGATACTGACCGGCCAACGGACCATATGGGGC
AGCAGGAGTAACACCGCTACAAGAAGTAAACTGCTGTACACATTACTACA
TACAACCTGTCCCTACAGCAGCTTGCGGCAGCGGGAACAGGCAGGAGACA
AGAGCATGATGGCACAGAGGAGGGCTTCTACTTCCACCTCCCCTGCTGCT
GTTCAGGCCCTGCCATTTGTGTGCCCTCACGGACGGTGTTTCGGGATCCC
GGCGACAACGGCGGTACCGCAGCAGCTGTGCGGCGGGTTGATTCATTTTC
ACCAACTTTTGACGTTCATGTCCTTTCCTTCATACGTCAAGGCATACCCC
ACCGAGTCATGATACTCTGTGCTCGGTTCACATGTTCACCACGCGTTCTT
GGTTGTCAGCACGCCAGCGCTGTTGGCGAGACGGCGACTGGCCGTTCATT
GAAAGCCGCCCCCACTTCGCTACGTATATCTGCTCACACCTCAGGAGGTT
AGGTGTGTGGTTGATGTGGAGGGTCACACATCCATAATTGGCCTCACAGG
GACCTACACAAGAAGCCAAGCCGCCCTGCTGCCAGCTTGTTGTCACAACA
CTACTCTGCTGAACGGCGCCTCTCACTCTGCTGTGACATCCCCGTACGCA
CCAAAACAAACTCGTGCTGGATGTATAAGCGTACCTGGAGTTCGTCTCGA
GCACGTCGTGGAACCTCTGGAGGCTCGAGCTCGAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7697:4290..7226+

>mRNA_Ecto-sp13_S_contig7697.18929.1 ID=mRNA_Ecto-sp13_S_contig7697.18929.1|Name=mRNA_Ecto-sp13_S_contig7697.18929.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7697:4290..7226+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCACCCGCCCTGCTCCCGGTTGTGGGCCGCCGTCAGCACCGACGT
CGGGGACAGGACCGCCGATAGCGCCTCGCGGCCCCTGGCGGCGCGGGCGA
GGCTCGTGAACGCGACAAACGTTCCCGTTCCTCCGCTGCTTCCTCCCGCT
TCTTCTTGTGCTGCTGCTCCTGTTGCGAGGAGGCGTGAGTGTTGCCAATC
CACCGCCAAACGAAACGCTTGTTCATCCGTACCTGGAGTTCGTCTCGAGC
ACGTCGTGGAACCTCTGGAGGCTCGAGCTCGAAGG
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