prot_Ecto-sp13_S_contig76937.18925.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig76937.18925.1
Unique Name	prot_Ecto-sp13_S_contig76937.18925.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	100

Homology

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BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot
Match: A0A6H5L2G5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.340e-16
Identity = 42/55 (76.36%), Postives = 44/55 (80.00%), Query Frame = 0

Query:   46 MEPITAPIVPLVALFVGSTIAFVAPTGRRASWSLANPQHAVRSFTSAGTQRHNTR 100
            M PI+A IVPLV LFVGST AFV PTGR ASWSLANPQHAVRS T A T RH+ R
Sbjct:    1 MAPISATIVPLVTLFVGSTTAFVTPTGRGASWSLANPQHAVRSSTYAVTTRHDAR 55

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BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.690e-16
Identity = 44/55 (80.00%), Postives = 44/55 (80.00%), Query Frame = 0

Query:   46 MEPITAPIVPLVALFVGSTIAFVAPTGRRASWSLANPQHAVRSFTSAGTQRHNTR 100
            M PITA IVPLV LFVGST AFV PTGR ASWSLANPQHAVRS TSA   RHN R
Sbjct:    1 MAPITATIVPLVTLFVGSTTAFVTPTGRGASWSLANPQHAVRSSTSAVATRHNAR 55

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BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.790e-16
Identity = 44/55 (80.00%), Postives = 44/55 (80.00%), Query Frame = 0

Query:   46 MEPITAPIVPLVALFVGSTIAFVAPTGRRASWSLANPQHAVRSFTSAGTQRHNTR 100
            M PITA IVPLV LFVGST AFV PTGR ASWSLANPQHAVRS TSA   RHN R
Sbjct:    1 MAPITATIVPLVTLFVGSTTAFVTPTGRGASWSLANPQHAVRSSTSAVATRHNAR 55

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BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.240e-12
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 0

Query:   46 MEPITAPIVPLVALFVGSTIAFVAPTGRRASWSLANPQHAVRSFTSAGTQRHNT 99
            M P++A  +PL+AL +GST AFVAP GR ASWSLANPQ AVRS TSA   RHNT
Sbjct:    1 MAPLSATTIPLLALSLGSTTAFVAPIGRGASWSLANPQRAVRSSTSAAATRHNT 54

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BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA)

HSP 1 Score: 50.8 bits (120), Expect = 3.730e-5
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query:   46 MEPITAPIVPLVALFVGSTIAFVAPTGRRASWSLANPQHAVRSFTSAGTQ 95
            M P T+ I+PL+AL +GST AFV PTGR ASWSL + Q +  +FT+   Q
Sbjct:    1 MAPFTSSIIPLLALLLGSTTAFVTPTGRGASWSLPSVQQSS-TFTAVARQ 49

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A6H5L2G5_9PHAE	1.340e-16	76.36	EF-hand domain-containing protein n=1 Tax=Ectocarp...	[more]
D8LS20_ECTSI	1.690e-16	80.00	EF-hand domain-containing protein n=1 Tax=Ectocarp...	[more]
D8LS19_ECTSI	1.790e-16	80.00	EF-hand domain-containing protein n=7 Tax=Ectocarp...	[more]
D7FRG5_ECTSI	1.240e-12	68.52	EF-hand domain-containing protein n=2 Tax=Ectocarp...	[more]
A0A2I6U1M4_SACJA	3.730e-5	54.00	Tic20-like protein n=15 Tax=Saccharina japonica Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 49..69
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 70..100
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..48
None	No IPR available	TMHMM	TMhelix		coord: 49..71

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig76937	contig	Ecto-sp13_S_contig76937:294..593 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig76937.18925.1	mRNA_Ecto-sp13_S_contig76937.18925.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig76937 213..593 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig76937.18925.1 ID=prot_Ecto-sp13_S_contig76937.18925.1|Name=mRNA_Ecto-sp13_S_contig76937.18925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MHTSFTNRTVAWSLSPIPSIHQQTHGAVDTHHDDISQINTTTAAAMEPIT
APIVPLVALFVGSTIAFVAPTGRRASWSLANPQHAVRSFTSAGTQRHNTR