mRNA_Ecto-sp13_S_contig76937.18925.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76937.18925.1
Unique NamemRNA_Ecto-sp13_S_contig76937.18925.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot
Match: A0A6H5L2G5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.450e-16
Identity = 42/55 (76.36%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:  217 MEPITAPIVPLVALFVGSTIAFVAPTGRRASWSLANPQHAVRSFTSAGTQRHNTR 381
            M PI+A IVPLV LFVGST AFV PTGR ASWSLANPQHAVRS T A T RH+ R
Sbjct:    1 MAPISATIVPLVTLFVGSTTAFVTPTGRGASWSLANPQHAVRSSTYAVTTRHDAR 55
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BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 4.450e-16
Identity = 44/55 (80.00%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:  217 MEPITAPIVPLVALFVGSTIAFVAPTGRRASWSLANPQHAVRSFTSAGTQRHNTR 381
            M PITA IVPLV LFVGST AFV PTGR ASWSLANPQHAVRS TSA   RHN R
Sbjct:    1 MAPITATIVPLVTLFVGSTTAFVTPTGRGASWSLANPQHAVRSSTSAVATRHNAR 55
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BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 4.710e-16
Identity = 44/55 (80.00%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:  217 MEPITAPIVPLVALFVGSTIAFVAPTGRRASWSLANPQHAVRSFTSAGTQRHNTR 381
            M PITA IVPLV LFVGST AFV PTGR ASWSLANPQHAVRS TSA   RHN R
Sbjct:    1 MAPITATIVPLVTLFVGSTTAFVTPTGRGASWSLANPQHAVRSSTSAVATRHNAR 55
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BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.150e-12
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:  217 MEPITAPIVPLVALFVGSTIAFVAPTGRRASWSLANPQHAVRSFTSAGTQRHNT 378
            M P++A  +PL+AL +GST AFVAP GR ASWSLANPQ AVRS TSA   RHNT
Sbjct:    1 MAPLSATTIPLLALSLGSTTAFVAPIGRGASWSLANPQRAVRSSTSAAATRHNT 54
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BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA)

HSP 1 Score: 50.8 bits (120), Expect = 8.680e-5
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:  217 MEPITAPIVPLVALFVGSTIAFVAPTGRRASWSLANPQHAVRSFTSAGTQ 366
            M P T+ I+PL+AL +GST AFV PTGR ASWSL + Q +  +FT+   Q
Sbjct:    1 MAPFTSSIIPLLALLLGSTTAFVTPTGRGASWSLPSVQQSS-TFTAVARQ 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76937.18925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L2G5_9PHAE3.450e-1676.36EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LS20_ECTSI4.450e-1680.00EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LS19_ECTSI4.710e-1680.00EF-hand domain-containing protein n=7 Tax=Ectocarp... [more]
D7FRG5_ECTSI3.150e-1268.52EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
A0A2I6U1M4_SACJA8.680e-554.00Tic20-like protein n=15 Tax=Saccharina japonica Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76937contigEcto-sp13_S_contig76937:213..593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score84.3
Seed ortholog evalue3.4e-14
Seed eggNOG ortholog2880.D8LS19
Model size381
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042170,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Exons1
EggNOG free text desc.protein transport
EggNOG OGs2BYWW@1,2QUSD@2759
Cds size300
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464039.7859375-UTR-Ecto-sp13_S_contig76937:212..2931681464039.7859375-UTR-Ecto-sp13_S_contig76937:212..293Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig76937 213..293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464039.8068328-CDS-Ecto-sp13_S_contig76937:293..5931681464039.8068328-CDS-Ecto-sp13_S_contig76937:293..593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76937 294..593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76937.18925.1prot_Ecto-sp13_S_contig76937.18925.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76937 294..593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76937.18925.1

>prot_Ecto-sp13_S_contig76937.18925.1 ID=prot_Ecto-sp13_S_contig76937.18925.1|Name=mRNA_Ecto-sp13_S_contig76937.18925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MHTSFTNRTVAWSLSPIPSIHQQTHGAVDTHHDDISQINTTTAAAMEPIT
APIVPLVALFVGSTIAFVAPTGRRASWSLANPQHAVRSFTSAGTQRHNTR
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mRNA from alignment at Ecto-sp13_S_contig76937:213..593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76937.18925.1 ID=mRNA_Ecto-sp13_S_contig76937.18925.1|Name=mRNA_Ecto-sp13_S_contig76937.18925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76937:213..593+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCTCCCTGACAACGCGTAGAGCACCTCCTAACGGCTGCACTCCTGACT
GCGCGATGAGACAGAGAGCAACTACGTGTGAATGCACACATCATTCACCA
ACCGCACTGTAGCCTGGTCACTCTCGCCCATCCCCAGCATTCACCAACAA
ACACACGGCGCGGTCGACACACACCACGACGACATTTCACAAATCAACAC
AACAACAGCAGCAGCCATGGAACCAATCACCGCACCAATCGTTCCCCTAG
TTGCCCTCTTCGTGGGCTCCACCATCGCCTTCGTCGCTCCAACCGGCCGC
CGAGCCTCGTGGTCCCTGGCCAACCCTCAGCACGCTGTCAGGTCGTTCAC
GTCCGCCGGAACCCAGCGCCACAACACTCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76937:213..593+

>mRNA_Ecto-sp13_S_contig76937.18925.1 ID=mRNA_Ecto-sp13_S_contig76937.18925.1|Name=mRNA_Ecto-sp13_S_contig76937.18925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76937:213..593+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACACATCATTCACCAACCGCACTGTAGCCTGGTCACTCTCGCCCAT
CCCCAGCATTCACCAACAAACACACGGCGCGGTCGACACACACCACGACG
ACATTTCACAAATCAACACAACAACAGCAGCAGCCATGGAACCAATCACC
GCACCAATCGTTCCCCTAGTTGCCCTCTTCGTGGGCTCCACCATCGCCTT
CGTCGCTCCAACCGGCCGCCGAGCCTCGTGGTCCCTGGCCAACCCTCAGC
ACGCTGTCAGGTCGTTCACGTCCGCCGGAACCCAGCGCCACAACACTCGA
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