mRNA_Ecto-sp13_S_contig7691.18924.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7691.18924.1
Unique NamemRNA_Ecto-sp13_S_contig7691.18924.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: A0A6H5K474_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.500e-26
Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  709 VGGLPSVSNHCQGSYRPFVRCAADPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKGMGGIRNG 1029
            +G  P V+N         V+   +P I +PY +L+L V QE NSL    E+DPLDLAE+FG VGGFWDLL+I+WPIFFVA+SRQ PHLK R+F K+V KG+GG+R G
Sbjct:  260 LGQEPIVNNKALSVSTATVKDEVNPAIVKPYAQLSLQVQQEPNSLEVITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPRNFKKSVNKGLGGLRVG 366          
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: D8LMD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD1_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 5.200e-26
Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  709 VGGLPSVSNHCQGSYRPFVRCAADPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKGMGGIRNG 1029
            +G  P V+N         V+   +P I +PY +L+L   QE NSL    E+DPLDLAE+FG VGGFWDLL+I+WPIFFVA+SRQ PHLK R+F K+VTKG+GG+R G
Sbjct:  292 LGQEPIVNNKALSVSTATVKDEVNPAIVKPYAQLSLQFQQEPNSLEIITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPRNFTKSVTKGLGGLRIG 398          
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: A0A6H5JN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN97_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.560e-25
Identity = 64/137 (46.72%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  703 MSVGGLPSVSNHCQGSYRPFVRCAADPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKGMGGIRNGSPVEQVDPS*RSGSGSWSARANTGRDGR 1113
            + +G  P VSN         V+   +P I +PY +L+L V Q  NS     E+DPLDLAE+FG VGGFWDLL+I+WPIFFVA+SRQ PHLK R+F ++VTKG+ G+R G           +GS S   R N  ++G+
Sbjct:  218 IKLGQEPIVSNKALSVSTATVKHEVNPAIVKPYAQLSLQVQQAPNSHECITEVDPLDLAEMFGNVGGFWDLLMIIWPIFFVAASRQDPHLKPRNFKESVTKGLSGLRIGDSKHPAARDGFNGSPSVEERPNWEQEGK 354          
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: A0A6H5K6D1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.010e-21
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1
Query:  787 IARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKGMGGIRNGSPV 1038
            I +PY +L+L   QE NSL    E DP DLAE+FG VGGFWDLL+++WPIFFVA+SRQ PHLK R+F K+V KG+ G+R G  V
Sbjct:  204 IDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPRNFKKSVAKGLQGLRVGEVV 287          
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.610e-21
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1
Query:  787 IARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKGMGGIRNGSPV 1038
            I +PY +L+L   QE NSL    E DP DLAE+FG VGGFWDLL+++WPIFFVA+SRQ PHLK R+F K+V KG+ G+R G  V
Sbjct:  247 IDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPRNFKKSVAKGLEGLRIGELV 330          
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: D7FU22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU22_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 8.290e-21
Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 1
Query:  787 IARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKG 1008
            IA PY  L++ + Q T+SL    EI+PL++AELFG VGGFWDLLL+LWPIFF+++SRQ PHLKGR+F K+VT+G
Sbjct:   52 IASPYAWLSMEIAQSTDSLEEITEINPLEIAELFGNVGGFWDLLLLLWPIFFISASRQDPHLKGRNFKKSVTRG 125          
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.630e-18
Identity = 46/74 (62.16%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  787 IARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKG 1008
            IA PY  L++ + Q T+SL    EI+PL++AELFG VGGFWDLLL+LWPIFF+++SRQ PHLK R+F K+VT+G
Sbjct:  245 IASPYAWLSMEIAQTTDSLEEITEINPLEIAELFGNVGGFWDLLLMLWPIFFISASRQDPHLKVRNFKKSVTRG 318          
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: A0A6H5JF84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF84_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.960e-15
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  775 ADPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTK 1005
            AD DI +PY +L++ + Q+ +S     E DP + AE+ G +GGFWDL+LILWP+FFVA+S+  P+LK R+F K+ T+
Sbjct:   79 ADGDITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFAKSFTR 155          
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: D7FXH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.890e-15
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  775 ADPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTK 1005
            AD DI +PY +L++ + Q+ +S     E DP + AE+ G +GGFWDL+LILWP+FFVA+S+  P+LK R+F K+VT+
Sbjct:  257 ADADITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFAKSVTR 333          
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: D8LNQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ1_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.210e-14
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  778 DPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKG 1008
            +P+I  PY  L+L + Q+ +S     E +P + AE+FG +GGFWDLLLILWP+ FVA+++Q PHLK R+F K+V +G
Sbjct:  198 NPNITMPYAYLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVATTQQDPHLKPRTFKKSVVRG 274          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5K474_9PHAE2.500e-2656.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMD1_ECTSI5.200e-2656.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JN97_9PHAE1.560e-2546.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6D1_9PHAE1.010e-2160.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMD2_ECTSI2.610e-2160.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FU22_ECTSI8.290e-2163.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU23_ECTSI2.630e-1862.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JF84_9PHAE1.960e-1549.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXH8_ECTSI3.890e-1550.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNQ1_ECTSI1.210e-1450.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7691contigEcto-sp13_S_contig7691:3682..6400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1766
Hectar predicted targeting categorysignal peptide
Exons3
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464039.710066-UTR-Ecto-sp13_S_contig7691:3681..42841681464039.710066-UTR-Ecto-sp13_S_contig7691:3681..4284Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7691 3682..4284 +
1681464039.7425447-UTR-Ecto-sp13_S_contig7691:5041..50481681464039.7425447-UTR-Ecto-sp13_S_contig7691:5041..5048Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7691 5042..5048 +
1681464039.7539518-UTR-Ecto-sp13_S_contig7691:5700..64001681464039.7539518-UTR-Ecto-sp13_S_contig7691:5700..6400Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7691 5701..6400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464039.7220159-CDS-Ecto-sp13_S_contig7691:4284..45911681464039.7220159-CDS-Ecto-sp13_S_contig7691:4284..4591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7691 4285..4591 +
1681464039.7322354-CDS-Ecto-sp13_S_contig7691:4892..50411681464039.7322354-CDS-Ecto-sp13_S_contig7691:4892..5041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7691 4893..5041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7691.18924.1prot_Ecto-sp13_S_contig7691.18924.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7691 4285..5041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7691.18924.1

>prot_Ecto-sp13_S_contig7691.18924.1 ID=prot_Ecto-sp13_S_contig7691.18924.1|Name=mRNA_Ecto-sp13_S_contig7691.18924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
MCRTFATLFLFTIVLLYFAENYDVSCAIRPFCVMSVGGLPSVSNHCQGSY
RPFVRCAADPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGG
FWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKGMGGIRNGSPVEQVDP
S*
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mRNA from alignment at Ecto-sp13_S_contig7691:3682..6400+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7691.18924.1 ID=mRNA_Ecto-sp13_S_contig7691.18924.1|Name=mRNA_Ecto-sp13_S_contig7691.18924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2719bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7691:3682..6400+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCCCTCCTCCTTTCCGAGCACGACAGCGTCCTGGGTACGGGCGTTGTC TCACCGTCTGAAGTTAATACACTACACAAACAAGTCCCGACAAGTACGCG GAGTACGGCCGACAAACAGTGGATATACATCACCTTCAAGGACGCAGGAA CAGGGAGCCTCTCCTCCGAAATCCCACTTCCGTATACCTGCATTTCTAAT TGGTCAACCAGTCGGGAGTTCACGCACGTGGTTAGTTGCGTTCTCCTTTT TGCTTTCCGATGAATACACACGATTTTGGCCGGTAGTTGAAAACTTTGTT CCATGGTGAAGAAGGTATGGATGCGGGTCGCGAGAATATGTGGCGCTCGA GCGTGATGCCGTAACCGCAGAAATATTTCGAGTATAGCGCAGTTGGACAC CGTGTGCAACGGTGCAAGGGTGGTTACATGCGACCGGTGAGATACGACAC GCACGGTAGCGATCTACCACGAGTGCGGTGCAGCAGAAAAAGGTATCGGT TTCAAACCTTTTACACGAATGTTGGAATGCGCCGACATAATGGTCAACGG TAACTGGTGTACCACGTGGTATGCTTTCGTAGCAGTGGAGCGTACGTTTA TCAATGTGTCGTACCTTTGCAACCCTTTTTCTCTTTACAATAGTTTTATT GTACTTCGCTGAAAATTATGATGTTTCGTGTGCCATCCGACCATTTTGCG TCATGTCGGTTGGCGGACTTCCATCGGTGTCGAACCATTGCCAAGGCTCG TACCGTCCCTTCGTACGTTGCGCAGCCGACCCAGATATCGCGAGACCGTA TCCCAAGCTGGCTTTGCTAGTCTACCAGGAGACGAACTCATTGCTCACCA GCAAAGAGATCGACCCTCTCGATCTCGCCGAACTGTTTGGCACCGTCGGC GGATTCTGGGGTGAGGACGCCGGGCGTATTATTTTTGCGTTTTGGAGGGG AGCACGATGCAAGATAGATCGGCCAGGCGGGGAGACGAAAAGGGAATGGA GGCGGACTATTATATGGCAAATCTTGCCACATGGTCTCGTCGAAAATTGT TTCTGTGTCATGTCTTTGTGAGCAACCGACTTATCCATCTCTTTAACGAG GGTAGTTTAATCCCCTACATGCACGAAAAGCATATGCCGCCTACGGTACT GCGATGCACATGAAACTGATACATTATGTCACTGCGAAACATCGTTGACC TTGAACCGCAGACCTGCTGCTGATATTATGGCCGATCTTCTTCGTGGCTT CCAGCAGACAAGCTCCTCACCTTAAGGGTCGCAGTTTTGATAAGGCGGTA ACCAAGGGGATGGGAGGTATTCGCAATGGCAGCCCAGTCGAACAAGTAGA CCCATCATAGAGATCAGGTGAGTGAGGTGTTCCCACGCCGAGCGATAGGT CTCAATGTTTTTCGTTCTTACCACCCGGGGGAGTGGGCAAAGGAAGGAAT GTAAGCAGCAGTTACCTGTGCAATACATATTTTCGCCACTTCTTGCACGT TTGGCTGATATTCATGCGACAGCTCCACCTCGCTTCGCATGCGTTGCTCC GAAGCAAACACGCTCTTCGTCGGTGCCGCTCCTGCTAAGCGCTATGACGT GCTGTTGTGTGAAGCAGCAGAAGCATTGTAGCAGGTTCTTCGCCGTGTCA ACCTTGCCGAAAATTCGGCAGGAAAGGCGTCAGTCGTTGGCGCCGGTGAT GGGCCTGACACTCGAGTGCATCCTCACCTGACATGGAGGGCGAGTGGCGT CCCATCCCCCCAGCATCATCCCGCGCCGCCCCTAGTTACAACAGAGAATT ACTGAGGTTCTTAGCCAGCCCAGTCGTGCCGAAGTACCGTGGCATGAATT CGAAGGGCGACACGCTCGCCCTCTAACGGTTTCAATGGCGATAAAGTGAC CGGGAAATGCTCCGTCGCCAGCCACACGTTCGTGTAGCACTGTCTGTTTC GGCGGCGATCGAAGGTTCAGTTTGGCTCGACTGACGCATTTTTGTCGTGC TCGCGGAAACTTTAAACAGGCTCTGGCAGCTGGAGCGCCCGGGCGAACAC GGGGCGAGACGGACGGCTGCGACATTGAAGAGACGTGTCTCGCTCGCTGT AGTATTCTGCACGGCGAGTTGGGTTTGTGAAGAATGCTTTTGTTCTGCAA ATCCATCCCCCCGCGGGGAAATAGGGTGTGCAGGGGTAAAGGGTGGTGGC TCTGAAGGTAACGGGAGTGCGACAAGCGTGACGTGGGAAGAAATTTGTTT TTCGTCGAGACAAGTCTTCACCTAGGCCAGTTGTTTTCGGTGTTCGTGTA GCCCAACGGGTAGACGAATCTCTGTCTCATTTTTCGATCTACGGTGCATG CCTACGTGTTTTACGATCTGATGGCGAGACCTGTGCTCCGGCTGTAGAGT ACACAATTAGCGCCAGTAGGACGAGGTAGAACTTAATTGAATTGCCTTTT ATTCGCACGGGGGGGGATATTGTAGGGATCGCACAGGGTAGCGGTGGTCG TTTCGTCTTTTTCCTGGCTCCAGCATCGCCGACACCCTTTCAGGGTCAAC ATTTTCCTGTCACATCTAGGGATTTCCGCAGACCATTTGAGTTGCATCAG GCAACTGCACTTTTTTTGCGACAGTGCTGTTGTTGGATCGCCAGCCATTA CTGTCATGAGGTCCTGCTCCTCCTGCTGATGATTCTGACACATGTTACCT TTTATTTACAAAAAGTCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7691:3682..6400+

>mRNA_Ecto-sp13_S_contig7691.18924.1 ID=mRNA_Ecto-sp13_S_contig7691.18924.1|Name=mRNA_Ecto-sp13_S_contig7691.18924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7691:3682..6400+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTCGTACCTTTGCAACCCTTTTTCTCTTTACAATAGTTTTATTGTA
CTTCGCTGAAAATTATGATGTTTCGTGTGCCATCCGACCATTTTGCGTCA
TGTCGGTTGGCGGACTTCCATCGGTGTCGAACCATTGCCAAGGCTCGTAC
CGTCCCTTCGTACGTTGCGCAGCCGACCCAGATATCGCGAGACCGTATCC
CAAGCTGGCTTTGCTAGTCTACCAGGAGACGAACTCATTGCTCACCAGCA
AAGAGATCGACCCTCTCGATCTCGCCGAACTGTTTGGCACCGTCGGCGGA
TTCTGGGACCTGCTGCTGATATTATGGCCGATCTTCTTCGTGGCTTCCAG
CAGACAAGCTCCTCACCTTAAGGGTCGCAGTTTTGATAAGGCGGTAACCA
AGGGGATGGGAGGTATTCGCAATGGCAGCCCAGTCGAACAAGTAGACCCA
TCATAG
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