mRNA_Ecto-sp13_S_contig7691.18924.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: A0A6H5K474_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.500e-26 Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 1
Query: 709 VGGLPSVSNHCQGSYRPFVRCAADPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKGMGGIRNG 1029
+G P V+N V+ +P I +PY +L+L V QE NSL E+DPLDLAE+FG VGGFWDLL+I+WPIFFVA+SRQ PHLK R+F K+V KG+GG+R G
Sbjct: 260 LGQEPIVNNKALSVSTATVKDEVNPAIVKPYAQLSLQVQQEPNSLEVITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPRNFKKSVNKGLGGLRVG 366
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: D8LMD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD1_ECTSI) HSP 1 Score: 121 bits (304), Expect = 5.200e-26 Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 1
Query: 709 VGGLPSVSNHCQGSYRPFVRCAADPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKGMGGIRNG 1029
+G P V+N V+ +P I +PY +L+L QE NSL E+DPLDLAE+FG VGGFWDLL+I+WPIFFVA+SRQ PHLK R+F K+VTKG+GG+R G
Sbjct: 292 LGQEPIVNNKALSVSTATVKDEVNPAIVKPYAQLSLQFQQEPNSLEIITEVDPLDLAEMFGNVGGFWDLLMIMWPIFFVAASRQDPHLKPRNFTKSVTKGLGGLRIG 398
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: A0A6H5JN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN97_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.560e-25 Identity = 64/137 (46.72%), Postives = 85/137 (62.04%), Query Frame = 1
Query: 703 MSVGGLPSVSNHCQGSYRPFVRCAADPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKGMGGIRNGSPVEQVDPS*RSGSGSWSARANTGRDGR 1113
+ +G P VSN V+ +P I +PY +L+L V Q NS E+DPLDLAE+FG VGGFWDLL+I+WPIFFVA+SRQ PHLK R+F ++VTKG+ G+R G +GS S R N ++G+
Sbjct: 218 IKLGQEPIVSNKALSVSTATVKHEVNPAIVKPYAQLSLQVQQAPNSHECITEVDPLDLAEMFGNVGGFWDLLMIIWPIFFVAASRQDPHLKPRNFKESVTKGLSGLRIGDSKHPAARDGFNGSPSVEERPNWEQEGK 354
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: A0A6H5K6D1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D1_9PHAE) HSP 1 Score: 107 bits (266), Expect = 1.010e-21 Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1
Query: 787 IARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKGMGGIRNGSPV 1038
I +PY +L+L QE NSL E DP DLAE+FG VGGFWDLL+++WPIFFVA+SRQ PHLK R+F K+V KG+ G+R G V
Sbjct: 204 IDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPRNFKKSVAKGLQGLRVGEVV 287
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI) HSP 1 Score: 106 bits (265), Expect = 2.610e-21 Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 1
Query: 787 IARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKGMGGIRNGSPV 1038
I +PY +L+L QE NSL E DP DLAE+FG VGGFWDLL+++WPIFFVA+SRQ PHLK R+F K+V KG+ G+R G V
Sbjct: 247 IDKPYAQLSLQFQQEPNSLEVITENDPFDLAEMFGNVGGFWDLLMLVWPIFFVAASRQDPHLKPRNFKKSVAKGLEGLRIGELV 330
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: D7FU22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU22_ECTSI) HSP 1 Score: 103 bits (256), Expect = 8.290e-21 Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 1
Query: 787 IARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKG 1008
IA PY L++ + Q T+SL EI+PL++AELFG VGGFWDLLL+LWPIFF+++SRQ PHLKGR+F K+VT+G
Sbjct: 52 IASPYAWLSMEIAQSTDSLEEITEINPLEIAELFGNVGGFWDLLLLLWPIFFISASRQDPHLKGRNFKKSVTRG 125
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 2.630e-18 Identity = 46/74 (62.16%), Postives = 60/74 (81.08%), Query Frame = 1
Query: 787 IARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKG 1008
IA PY L++ + Q T+SL EI+PL++AELFG VGGFWDLLL+LWPIFF+++SRQ PHLK R+F K+VT+G
Sbjct: 245 IASPYAWLSMEIAQTTDSLEEITEINPLEIAELFGNVGGFWDLLLMLWPIFFISASRQDPHLKVRNFKKSVTRG 318
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: A0A6H5JF84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF84_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 1.960e-15 Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 775 ADPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTK 1005
AD DI +PY +L++ + Q+ +S E DP + AE+ G +GGFWDL+LILWP+FFVA+S+ P+LK R+F K+ T+
Sbjct: 79 ADGDITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFAKSFTR 155
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: D7FXH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH8_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 3.890e-15 Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 775 ADPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTK 1005
AD DI +PY +L++ + Q+ +S E DP + AE+ G +GGFWDL+LILWP+FFVA+S+ P+LK R+F K+VT+
Sbjct: 257 ADADITKPYARLSMELKQQFDSWEIITEADPFEFAEILGNIGGFWDLILILWPLFFVAASQPEPNLKPRNFAKSVTR 333
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Match: D8LNQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ1_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.210e-14 Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 778 DPDIARPYPKLALLVYQETNSLLTSKEIDPLDLAELFGTVGGFWDLLLILWPIFFVASSRQAPHLKGRSFDKAVTKG 1008
+P+I PY L+L + Q+ +S E +P + AE+FG +GGFWDLLLILWP+ FVA+++Q PHLK R+F K+V +G
Sbjct: 198 NPNITMPYAYLSLEMKQQADSWEIITESNPYEFAEMFGNIGGFWDLLLILWPLCFVATTQQDPHLKPRTFKKSVVRG 274 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7691.18924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7691.18924.1 >prot_Ecto-sp13_S_contig7691.18924.1 ID=prot_Ecto-sp13_S_contig7691.18924.1|Name=mRNA_Ecto-sp13_S_contig7691.18924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp MCRTFATLFLFTIVLLYFAENYDVSCAIRPFCVMSVGGLPSVSNHCQGSYback to top mRNA from alignment at Ecto-sp13_S_contig7691:3682..6400+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7691.18924.1 ID=mRNA_Ecto-sp13_S_contig7691.18924.1|Name=mRNA_Ecto-sp13_S_contig7691.18924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2719bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7691:3682..6400+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7691:3682..6400+ >mRNA_Ecto-sp13_S_contig7691.18924.1 ID=mRNA_Ecto-sp13_S_contig7691.18924.1|Name=mRNA_Ecto-sp13_S_contig7691.18924.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7691:3682..6400+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |