mRNA_Ecto-sp13_S_contig769.18921.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig769.18921.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE) HSP 1 Score: 436 bits (1121), Expect = 7.940e-148 Identity = 222/249 (89.16%), Postives = 227/249 (91.16%), Query Frame = 1
Query: 394 MGSSWDAERGAKAAVWFSFYVLCWLLMQVSCKLELPGNCRRAYEPLDVLTELPFLLAFALGQA---FLCDILDSERFHSLSKQWYLPVVVVGSGITTSALMKNDGFVDTHESEDGMTTAVNVVSTLLVIVVGLAFVYHFFVAWKTLPGAVMISGGVAAPEDATAPVRSGNRFTQYMATTVLVAAFVALYAAFAHRRGDNWNYHYILLAWVMSLIASFDDPFSVVWLGVTTGAFLQGVGAYSFQFLFRSD 1131
M SSWDAERGAKAAVWFSFYVLCWLLMQVSC+LE PGN R A +PLDVLTELPFLLAFALGQA FLCD LDSERFHSLSK+ YLPVVVVGSGITTSAL KNDGFVDTHE EDGMTTAVNVVSTLLVI VGLAFVYHFFVAW TLPGAVMISGGV+ PEDATAPVRSGNRF +YMAT VLVAAFVAL AAF HRRGDNWNYHY LLAWVMSLIA FDDPFSVVWLGVTTGAFLQGVGAYSFQFLFR D
Sbjct: 1 MSSSWDAERGAKAAVWFSFYVLCWLLMQVSCELEPPGNYRWACQPLDVLTELPFLLAFALGQATTAFLCDTLDSERFHSLSKERYLPVVVVGSGITTSALTKNDGFVDTHEIEDGMTTAVNVVSTLLVIAVGLAFVYHFFVAWTTLPGAVMISGGVSTPEDATAPVRSGNRFARYMATAVLVAAFVALNAAFVHRRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVGAYSFQFLFRFD 249
BLAST of mRNA_Ecto-sp13_S_contig769.18921.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE) HSP 1 Score: 265 bits (678), Expect = 7.240e-81 Identity = 130/250 (52.00%), Postives = 174/250 (69.60%), Query Frame = 1
Query: 394 MGSSWDAERGAKAAVWFSFYVLCWLLMQVSCKLELPGNCRRAYEPLDVLTELPFLLAFALGQAFLCDILDSERFHSLSKQWYLPVVVVGSGITTSALMKNDGFVDTHESEDGMTTAVNVVSTLLVIVVGLAFVYHFFVAWKTLPGAV----MISGGVAAPEDATAPVRSGNRFTQYMATTVLVAAFVALYAAFAHRRGDNWNYHYILLAWVMSLIASFDDPFSVVWLGVTTGAFLQGVGAYSFQFLFRSD 1131
M WDAE+G KAA W FY+ + LM SC++ +P NC RA + +DVLTELPFL FA AF+C IL+ R+H+LSK+ Y PV+V+ SG+ TSALM NDGF H+ ++ A +S +L+I+V L F YH+F+AWK LPG M+SG VA P P R+ NR+ QYMA+ ++ ++ L++AFA+ RGD W+YHY+LLAW+MSLIA+FDD SV WLG+TTG FLQGVGAYSF+ L + +
Sbjct: 35 MALVWDAEQGVKAASWVGFYIFLYALMAASCEVGVPENCTRATDAMDVLTELPFLFVFA---AFMCGILNGTRYHALSKKMYFPVLVIASGLATSALMNNDGFEGLHDPGGDLSPAEAALSIILLILVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPP---PSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVLMQGN 278
BLAST of mRNA_Ecto-sp13_S_contig769.18921.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI) HSP 1 Score: 158 bits (399), Expect = 6.330e-42 Identity = 77/151 (50.99%), Postives = 105/151 (69.54%), Query Frame = 1
Query: 685 MKNDGFVDTHESEDGMTTAVNVVSTLLVIVVGLAFVYHFFVAWKTLPGAV----MISGGVAAPEDATAPVRSGNRFTQYMATTVLVAAFVALYAAFAHRRGDNWNYHYILLAWVMSLIASFDDPFSVVWLGVTTGAFLQGVGAYSFQFLFR 1125
M NDGF H+ ++ A +S +L+++V L F YH+F+AWK LPG M+SG VA P P R+ NR+ QYMA+ ++ ++ L++AFA+ RGD W+YHY+LLAW+MSLIA+FDD SV WLG+TTG FLQGVGAYSF+ L +
Sbjct: 1 MNNDGFEGLHDPGGELSPAEAALSIILLVLVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPP---PSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVLLQ 148
BLAST of mRNA_Ecto-sp13_S_contig769.18921.1 vs. uniprot
Match: A0A7J6NSF0_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NSF0_PEROL) HSP 1 Score: 62.0 bits (149), Expect = 2.570e-6 Identity = 63/242 (26.03%), Postives = 101/242 (41.74%), Query Frame = 1
Query: 454 VLCWLLMQVS--------C-KLELPGNCRRAYEPLDVLTELPFLLAFALGQAFLCDILD----SERFHSLSKQWYLPVVVVGSGITTSALMKNDGFVDTHESEDGMTTAVNVVSTLLVIVVGLAFV---YHFFVAWKTLPGAVMISGGVAAPEDATAPVRSGNRFTQYMATTVLVAAFVALYAAFAHRRGDN---WNYHYILLAWVMSLIASFDDPFSVVWLGVTTGAFLQGVGAYSFQFLF 1122
VL WLL+ V+ C K +P + R Y L T L L F + QA+ +++D S+ S + W+ S + T M D S G N ST+L +H + + K LP T P + +++ F+ ++ H DN ++ H+ +AW++SLIA+FD P S++ L +T+G F+QG+ AYS +F
Sbjct: 426 VLRWLLLLVAGYAYNRFFCEKYNIPRDSDR-YTYLGHSTNLANLAMFGIIQAWFVEVIDDPKRSKWIFSFPRWWFFITFFAASTVFTLLGML-DALSHNSISPSGHLDRWNAFSTVLTXXXXXXXXXXXWHVWYSIKVLP---------------TYPDAAVYILSRFGVVCTFGVTFLLIHFDDEHNHDDNPVTFHLHHYFIAWLLSLIAAFDHPISLIMLAITSGIFVQGIAAYSAAGIF 650
BLAST of mRNA_Ecto-sp13_S_contig769.18921.1 vs. uniprot
Match: C5L8A4_PERM5 (Uncharacterized protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L8A4_PERM5) HSP 1 Score: 58.5 bits (140), Expect = 1.530e-5 Identity = 57/207 (27.54%), Postives = 92/207 (44.44%), Query Frame = 1
Query: 556 LLAFALGQAFLCDILD----SERFHSLSKQWYLPVVVVGSGITTSALMKNDGFVDTHESEDGMT---TAVNVVSTLLVIVVGLAFVYHFFVAWKTLPGAVMISGGVAAPEDATAPVRSGNRFTQYMATTVLVAAFVALYAAFAHRRGDN---WNYHYILLAWVMSLIASFDDPFSVVWLGVTTGAFLQGVGAYSFQFLF---RSD*G 1137
L F + QA+ +++D S+ SL + W+ S + T M D + S G A ++V T L + L ++H + K LP DA + S T L+ + Y ++ DN ++ H+ +AW++SLIA+FD P S++ L +T+G F+QG+ AYS +F RSD G
Sbjct: 134 LAMFGIIQAWFVEVIDDPKRSKWIFSLRRWWFFITFFAASTVFTLLGML-DVLSHSSISPSGHLDNWNAFSIVLTFLASFLALLIIWHVVYSIKVLP----------TYADAAVYIISRVGVVCIFGITFLLIHYDDKY----NKHDDNPVTFHLHHYFIAWLLSLIAAFDHPISLLMLSITSGIFVQGIAAYSAAGIFFRPRSDGG 325 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig769.18921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig769.18921.1 >prot_Ecto-sp13_S_contig769.18921.1 ID=prot_Ecto-sp13_S_contig769.18921.1|Name=mRNA_Ecto-sp13_S_contig769.18921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp MGSSWDAERGAKAAVWFSFYVLCWLLMQVSCKLELPGNCRRAYEPLDVLTback to top mRNA from alignment at Ecto-sp13_S_contig769:14401..17897+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig769.18921.1 ID=mRNA_Ecto-sp13_S_contig769.18921.1|Name=mRNA_Ecto-sp13_S_contig769.18921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig769:14401..17897+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig769:14401..17897+ >mRNA_Ecto-sp13_S_contig769.18921.1 ID=mRNA_Ecto-sp13_S_contig769.18921.1|Name=mRNA_Ecto-sp13_S_contig769.18921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig769:14401..17897+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |