mRNA_Ecto-sp13_S_contig1225.1892.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1225.1892.1
Unique NamemRNA_Ecto-sp13_S_contig1225.1892.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1225.1892.1 vs. uniprot
Match: D7FYL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL0_ECTSI)

HSP 1 Score: 583 bits (1502), Expect = 5.970e-208
Identity = 305/339 (89.97%), Postives = 313/339 (92.33%), Query Frame = 1 
Query:    1 MPVRCVSTALKSCARSSKVLFQGKRSLREHGRMSPASSLHSQAPAAMQGRTFSGSTSGPGEAAAAVDMAKQGGDFPWRGAPNLIPEPVGSGSFLDGIMESIFEEFCLKGVDFTAGAEAAFVTTAAAFFKMRTLQVRAPKPSVETAAAGVDGASKGDAEEDPASAGAEKEEAEXXNXXXXXXEEAERVLAAVDKGLIALSSDKEGVPYYRLHRVVAKAIRRKKFIFGVQRGDDLSGRFTVTMSPSLEFVLQENNAFAQIRNALAGNATVTFQVDVDLACDETFYVKDKETGEIIQGKKESSGRIHRIRLESCLLMEQTIEQPHVWKVIDLDDWLKGNAFC 1017
            MPVR VSTALKSCARSSKVLFQGKRSLREHGRMSPASSL SQAPAAMQGR FSGS SGPGEAAAAVDMAK GGDFPWRGAPNLIPEP GSGSFLDGIMESIFE+FC KGVDFTAGAEAAFVTTAAA FKMRTL+VRAPKPSVE AAAGVDGA KG  EEDPASAGAE+EE +         EEA+RVLAAVDKGL+ALSSDK GVPYYRLHRVVAKAIRRKKFIFGVQRGDDLSGRFTV MSPSLEFVLQENNAFAQIRNALAGN TVTFQVDVDLACDETFYVKDKETGEIIQGKKESSGRIHR+RLESCLLMEQ IEQPH+WKVIDLDDWLKGNAFC
Sbjct:    1 MPVRYVSTALKSCARSSKVLFQGKRSLREHGRMSPASSLLSQAPAAMQGRAFSGSASGPGEAAAAVDMAKPGGDFPWRGAPNLIPEPAGSGSFLDGIMESIFEDFCFKGVDFTAGAEAAFVTTAAALFKMRTLKVRAPKPSVEAAAAGVDGAPKGGVEEDPASAGAEQEEEDKEKSAETSEEEADRVLAAVDKGLVALSSDKGGVPYYRLHRVVAKAIRRKKFIFGVQRGDDLSGRFTVAMSPSLEFVLQENNAFAQIRNALAGNVTVTFQVDVDLACDETFYVKDKETGEIIQGKKESSGRIHRVRLESCLLMEQAIEQPHIWKVIDLDDWLKGNAFC 339
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1225.1892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYL0_ECTSI5.970e-20889.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1225contigEcto-sp13_S_contig1225:1687..5662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1149
Hectar predicted targeting categorymitochondrion
Exons7
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004410.1
Cds size1020
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1225.1892.1prot_Ecto-sp13_S_contig1225.1892.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1225 1687..5533 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.448439-CDS-Ecto-sp13_S_contig1225:1686..17521681462651.448439-CDS-Ecto-sp13_S_contig1225:1686..1752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1225 1687..1752 +
1681462651.4570143-CDS-Ecto-sp13_S_contig1225:2906..33361681462651.4570143-CDS-Ecto-sp13_S_contig1225:2906..3336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1225 2907..3336 +
1681462651.4649143-CDS-Ecto-sp13_S_contig1225:3671..38501681462651.4649143-CDS-Ecto-sp13_S_contig1225:3671..3850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1225 3672..3850 +
1681462651.4753728-CDS-Ecto-sp13_S_contig1225:4315..44531681462651.4753728-CDS-Ecto-sp13_S_contig1225:4315..4453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1225 4316..4453 +
1681462651.4850473-CDS-Ecto-sp13_S_contig1225:4763..48231681462651.4850473-CDS-Ecto-sp13_S_contig1225:4763..4823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1225 4764..4823 +
1681462651.4991353-CDS-Ecto-sp13_S_contig1225:5049..51511681462651.4991353-CDS-Ecto-sp13_S_contig1225:5049..5151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1225 5050..5151 +
1681462651.5120566-CDS-Ecto-sp13_S_contig1225:5488..55331681462651.5120566-CDS-Ecto-sp13_S_contig1225:5488..5533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1225 5489..5533 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.5265224-UTR-Ecto-sp13_S_contig1225:5533..56621681462651.5265224-UTR-Ecto-sp13_S_contig1225:5533..5662Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1225 5534..5662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1225.1892.1

>prot_Ecto-sp13_S_contig1225.1892.1 ID=prot_Ecto-sp13_S_contig1225.1892.1|Name=mRNA_Ecto-sp13_S_contig1225.1892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=340bp
MPVRCVSTALKSCARSSKVLFQGKRSLREHGRMSPASSLHSQAPAAMQGR
TFSGSTSGPGEAAAAVDMAKQGGDFPWRGAPNLIPEPVGSGSFLDGIMES
IFEEFCLKGVDFTAGAEAAFVTTAAAFFKMRTLQVRAPKPSVETAAAGVD
GASKGDAEEDPASAGAEKEEAEAENSAETSEEEAERVLAAVDKGLIALSS
DKEGVPYYRLHRVVAKAIRRKKFIFGVQRGDDLSGRFTVTMSPSLEFVLQ
ENNAFAQIRNALAGNATVTFQVDVDLACDETFYVKDKETGEIIQGKKESS
GRIHRIRLESCLLMEQTIEQPHVWKVIDLDDWLKGNAFC*
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mRNA from alignment at Ecto-sp13_S_contig1225:1687..5662+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1225.1892.1 ID=mRNA_Ecto-sp13_S_contig1225.1892.1|Name=mRNA_Ecto-sp13_S_contig1225.1892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3976bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1225:1687..5662+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGTCCGATGCGTCAGCACGGCGTTGAAGTCATGCGCCAGGAGCTC
TAAGGTGCTCTTCCAGGTCTGTACGTCGCTAGCTGCCTATCGCGCGCCCG
CTCCTGGATGATACGATGTTAGAGTCAGTCCAGTCAGTCAGCCCCTCGAG
TCACGCAGCCAGGCCGTCAAATCTGAATCATGTTGTAGACTAGTGTTGCA
AACTACCTTTTGCAAGGTCGGTACGGTGCAAGGGCTTGTGAACATGTTGT
CGGTGCACTTCTTGGTTTCGTGTGTTGACTATTTTCATTTTTGCAAAATC
ACCGCATCCCGTAGGTGACACAAGATATCACCCACCCCTTTGGACCGATC
TTCAAAGCTCGATTTCTCCACAGCAAGAAGAACGGTAGCGCCGAAAACGG
TGACGTTGAAGCCATCTGGTCGAGAGCTTTCCGACAACGTATCGTTTGGT
GTATGTATTCTCTGTGTGGTGGAGTACTCGAGCTTTGAGAATCGGCGCAG
GGGGTGTGGTATTTTGCGTCACCTTCGTGTAGTACTTGTCGTGCCTATCG
TGACGGAAGCTACTGCTGTACAGCAGTAGGATGCATGCCATCCTCCTAGT
CTAGGGGGGTGATTACGCACAATATCTGTGAGGCTGCCACCCATAGCTGA
AAAATACATTGTGGGAAGCCCTCGAAGGCGCCTTTGGTCTGGGCTTCTTC
CCTCCTTGGAACAAATTTGCGTCAGCCTGGCGGAGCGATTCGCAATGGTT
TGCACCCGTAGTAAATAACAATCCACGTTGTGTTATTAACAGTGTGCCGA
GCGTCGCCTTTGCGTGGAGGGTTGCCGTGGATGCCCTTCGTAGCAGGCCG
TGGGCGTTGCCCCACGGAGTTTGGAATTGTTGGCGCCATCAACAGAAGCC
GGCGAAGGTCGTAGAGCCGATCTCTGAGATGACAAAAGAAGTGTCGACTG
AAACGCTCAGTAGCGAAGCGAAGCGCACCGCTTTGTTCGTACTGGCCTAA
AGGTGAAACCACTCTTGCAACCCCAACGTTTAGACAGAGGAGTACTCGTC
GTCAGGTGCACTACCCACCAGGTACACCACCTCCCAAACCCTGACAGCAG
TTTGAGAAGGGAAGGGGGGTCGTTACAAAAATCACAATTAGCTTCGTTGA
CACGGGTATGACGGACGGCTACTTTGAAACTTACATATGCACGTACTTTG
CTGTGCGCTTTTTTTTCCAGGGAAAGCGCTCGCTTCGAGAGCATGGACGA
ATGTCACCAGCGTCGTCGCTCCATTCGCAAGCGCCAGCGGCGATGCAGGG
CCGGACCTTCAGCGGCAGCACATCTGGGCCGGGAGAGGCAGCAGCTGCGG
TGGACATGGCCAAGCAGGGGGGGGATTTCCCCTGGCGCGGCGCCCCTAAT
CTGATCCCCGAGCCGGTAGGCAGCGGTTCTTTCCTCGACGGCATCATGGA
GTCGATTTTTGAGGAGTTTTGCTTGAAGGGCGTGGACTTTACGGCTGGTG
CGGAGGCGGCGTTCGTGACGACGGCTGCGGCGTTTTTCAAGATGCGCACG
TTACAAGTGCGAGCACCCAAGCCATCGGTAGAAACAGCAGCAGCAGGGGT
AGACGGGGCGTCGAAGGGCGATGCTGAGGAGGACCCAGCATCAGCCGGAG
GTGATTGCAGCAAACGCACGAAACCGGAAGCTGTAAATAGTTGTGTGTGT
CTTTTTTCGCGAGTCGGGGTTCACTGATCCCACGCGCACCAGCGTAGTAG
TAGTACACTGAATTTTGGTGGATTTAGCCGTAGTTTTTCGGCCGTGGTCG
TAGTCTTCTAGAGGTGTGAATGCGTACACATTTTTCCGCCGGAGAACTGC
TTGACGTTTCACGCCCCTCCGCCACTCACGCTCTTTGAGCCCGTCGCTCG
CTCTCGGCCTCAATGACGAAGTGCCCCAAATATACCCTCTGCGCGCCCCA
AAACAATGCACCTCCTTGGTTCACCCAATGGCCAGCGGAAAAGGAGGAGG
CGGAGGCGGAGAATTCGGCAGAGACGAGCGAGGAAGAGGCTGAACGAGTT
TTGGCCGCCGTCGACAAAGGGCTCATCGCGCTCTCGAGCGACAAGGAGGG
GGTCCCGTACTACCGCTTGCATCGGGTCGTCGCCAAAGCCATCAGGAGGA
AGAAGTTCATCTTTGTGAGCGAGAATGCTGCAGCAGTAGCAGTGGGAACA
GCAGCAGGGATGACTTCCTTCGTACTAGAAGCAGACTTTGTTTTATAGGC
AGCAGGGAGACGGTATCACTGGCGCCCCTTCGCTGTCCTCCGGTATGCAG
CACCTCGAGGGGTAGGTTTTCAAGCTTGATTCCTCCGCAATAGAAGGTGG
GGTTAGAGTGCTAAACATTTTTTTTTGTGCTTCGAGTACTTCGCTACTAT
CGTTGTAGAGGGTGCCAGGACTGAGAACAACAAACCTCGCGAAGCCCTCC
ACGACATGCATACATTATTTTTCGTTTCAAAGCTTGTGTTCATGGAATAC
GTTTGTCTTGTTCAAAAACAACGTGCCTCTCGTCGCCCTCCTTTCTCTTC
TGTGTCCCCGTGTTGAAACGCGATTTTTTTGTGATTGTTCGTTTTTTGGT
TCTTCGCTTTCTTGTCGCGGGCGGTTCAGGGCGTACAGCGAGGGGACGAC
CTATCGGGGAGGTTCACGGTGACCATGTCGCCGTCTTTGGAGTTCGTGCT
GCAGGAGAATAACGCCTTCGCTCAGATCAGGAACGCTCTTGCTGGGAACG
CCACCGTCACGTTTCAGGTGCTTCAACGGTGGCTTTGGACGTAACGGGAC
CCCCACCCCCCGGAAGAAGATATTTGTCTGCCGGGGCCCAAAGTCGGCCG
GCGTGTGCCGTTGTTGCTTACAGTCGAGATTTTTTGTCAGCACTCTAGAG
AACGGGTGGAAGAATCTGCGCCGAGACTCGCACCTGCCGTTCATCACGCT
TGTGGAAACCGCCCGGAATGGGTTGGTGTTCCGCACCACACAAGGCCCTG
CTCGCTCGTACTTGTATGCGTGCAGCGTGCTCTCGACGCGCTGCCCCTTT
TCTCCCACTTCCGTTGTCCTCCCCTAGGTGGACGTGGACCTGGCGTGCGA
CGAAACGTTTTACGTGAAGGATAAGGAAACTGGAGAGGTGCGTAATCTTG
TCCTCGTATCTATTTTGTTTTGTTTTGTTTTTCGCTTCGTCGAAGAATGA
AGGGATCGAACCAATTGTGGACTAAACCGTTTTTTGTGTCAAGATTGACA
TGGAAGAGAGAGGTTATTGGCCACTTTGTTTCTCGTGTTGGTTTTTTGGT
GGTGCAAGGGATGAAATCAAATCCTCTTCGAACCCTCCCCCTGGCCGTCT
GGTATTTCAACAGATCATTCAGGGGAAGAAGGAAAGCTCCGGGCGCATAC
ACCGCATCCGGTTAGAGAGCTGCCTTCTGATGGAGCAGACCATCGAGCAA
CCGCATGTTTGGAAGGTGAGGACGTGATTCTGGCGGAGAGCTTCTCCGCC
GCACATATTGCAGGCGCCGCCGCAACGCAACCAATCTGACAACGCGGTAG
AGCTTGACATCAGCAGTAACGGTGGCCTTGCCAAACGCTACGGTGCTCGC
GGCATTGCCTCTGCTGCTGCTACTGCTACTGCTGCTGAGGCGTTGTTGTT
TTGAAGCTAGCTCTTGTCGGGACCAACCGCTCTCCCGTTGACCTGCACGC
GATCTATCTCCGTCTCTCCCTGTACCCACGTTGCCTTTCGACGGTTTTTG
CCTTCTTGACTTTTTCTTTTGTCGTTTTGTCTTTGTCCTGGCGGCATCAC
AGGTGATCGACCTCGATGATTGGCTCAAGGGCAACGCCTTCTGCTGAGGA
AGATGTTTTTATGACAATGAGCCTGCCTTGGCGTCTAACCGCTGCAGAGG
TCGCCCAGTTTTATCAAGACACTCGGGGAGCGGGGGGTGGGTCGGGCTAG
GTTACACTCGAAAGGAGTGACGGCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1225:1687..5662+

>mRNA_Ecto-sp13_S_contig1225.1892.1 ID=mRNA_Ecto-sp13_S_contig1225.1892.1|Name=mRNA_Ecto-sp13_S_contig1225.1892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1225:1687..5662+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTGTCCGATGCGTCAGCACGGCGTTGAAGTCATGCGCCAGGAGCTC
TAAGGTGCTCTTCCAGGGAAAGCGCTCGCTTCGAGAGCATGGACGAATGT
CACCAGCGTCGTCGCTCCATTCGCAAGCGCCAGCGGCGATGCAGGGCCGG
ACCTTCAGCGGCAGCACATCTGGGCCGGGAGAGGCAGCAGCTGCGGTGGA
CATGGCCAAGCAGGGGGGGGATTTCCCCTGGCGCGGCGCCCCTAATCTGA
TCCCCGAGCCGGTAGGCAGCGGTTCTTTCCTCGACGGCATCATGGAGTCG
ATTTTTGAGGAGTTTTGCTTGAAGGGCGTGGACTTTACGGCTGGTGCGGA
GGCGGCGTTCGTGACGACGGCTGCGGCGTTTTTCAAGATGCGCACGTTAC
AAGTGCGAGCACCCAAGCCATCGGTAGAAACAGCAGCAGCAGGGGTAGAC
GGGGCGTCGAAGGGCGATGCTGAGGAGGACCCAGCATCAGCCGGAGCGGA
AAAGGAGGAGGCGGAGGCGGAGAATTCGGCAGAGACGAGCGAGGAAGAGG
CTGAACGAGTTTTGGCCGCCGTCGACAAAGGGCTCATCGCGCTCTCGAGC
GACAAGGAGGGGGTCCCGTACTACCGCTTGCATCGGGTCGTCGCCAAAGC
CATCAGGAGGAAGAAGTTCATCTTTGGCGTACAGCGAGGGGACGACCTAT
CGGGGAGGTTCACGGTGACCATGTCGCCGTCTTTGGAGTTCGTGCTGCAG
GAGAATAACGCCTTCGCTCAGATCAGGAACGCTCTTGCTGGGAACGCCAC
CGTCACGTTTCAGGTGGACGTGGACCTGGCGTGCGACGAAACGTTTTACG
TGAAGGATAAGGAAACTGGAGAGATCATTCAGGGGAAGAAGGAAAGCTCC
GGGCGCATACACCGCATCCGGTTAGAGAGCTGCCTTCTGATGGAGCAGAC
CATCGAGCAACCGCATGTTTGGAAGGTGATCGACCTCGATGATTGGCTCA
AGGGCAACGCCTTCTGCTGA
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