mRNA_Ecto-sp13_S_contig7685.18914.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7685.18914.1
Unique NamemRNA_Ecto-sp13_S_contig7685.18914.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7685.18914.1 vs. uniprot
Match: D7FIS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS2_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.100e-58
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1 
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRVGDLLAACDFE 261
            MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRR GDLLAACDFE
Sbjct:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRAGDLLAACDFE 87
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BLAST of mRNA_Ecto-sp13_S_contig7685.18914.1 vs. uniprot
Match: D7FIR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR8_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 2.150e-36
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    4 SDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRVGDLLAACDFE 261
            ++ + WEPL   DF+VLG V+TFQ VAL VCAHL++WRKWPPY+TKNVDVVIISTF+G+LW  +  I  G++RR  GD+LAACDFE
Sbjct:    3 AEGEVWEPLSTPDFWVLGFVATFQAVALLVCAHLLRWRKWPPYVTKNVDVVIISTFSGVLWNVSMIISSGYIRREAGDILAACDFE 88
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BLAST of mRNA_Ecto-sp13_S_contig7685.18914.1 vs. uniprot
Match: D7FTZ9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 5.630e-33
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRVGDLLAACDFE 261
            MSD + WEPL M+D+ +LG+V TFQ +ALGVC HL  WR WPPY+TKNVD+VII TFAG  WT   A++VGFV R  GDLLA C  E
Sbjct:    1 MSDEELWEPLTMVDYLMLGIVGTFQALALGVCVHLFLWRNWPPYVTKNVDIVIIMTFAGFAWTFANALDVGFVHRSKGDLLAECSLE 87
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BLAST of mRNA_Ecto-sp13_S_contig7685.18914.1 vs. uniprot
Match: D7FU03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU03_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 8.480e-33
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRVGDLLAACDFE 261
            MSD + WEPL M+D+ +LG V T Q  ALGVC HL+ WR WPPY+TKNVD+VI+ TFAG  WT   A+E G +RR  GD+LA C  E
Sbjct:    1 MSDEEVWEPLTMVDYTMLGFVGTVQAFALGVCVHLLIWRNWPPYVTKNVDIVIVMTFAGFAWTIAGALENGLIRRTEGDILAKCPLE 87
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BLAST of mRNA_Ecto-sp13_S_contig7685.18914.1 vs. uniprot
Match: D7FTZ7_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ7_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 2.220e-32
Identity = 53/87 (60.92%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRVGDLLAACDFE 261
            MSD +PWEPL  +D+ +LGMV  FQ  ALGVC HL++WRKWPPY+TKNVD+VII T AG  WT   A+E G + R  GD LA C FE
Sbjct:    1 MSDEEPWEPLTFVDYVMLGMVGAFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTLAGFAWTFASALETGIIERSEGDFLANCYFE 87
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BLAST of mRNA_Ecto-sp13_S_contig7685.18914.1 vs. uniprot
Match: D7FTZ5_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.630e-30
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRVGDLLAACDFE 261
            M D +PWEPL  +D+ +LG+V TFQ  ALGVC HL++WRKWPPY+TKNVD+VII TFAG  WT   A+  G ++R   D LA C FE
Sbjct:    1 MPDKEPWEPLAFVDYLMLGIVCTFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTFAGFAWTFAAAVGHGLIQRSEDDFLANCYFE 87
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BLAST of mRNA_Ecto-sp13_S_contig7685.18914.1 vs. uniprot
Match: A0A6H5JJQ0_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.090e-28
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRVGDLLAACDFE 261
            MSD + WEPL M+D+ +LG V T Q  ALGVC HL+ WR WPPY+TKNVD+VI+ TF G  WT + A++ G  RR  GD+LA C  E
Sbjct:    1 MSDEEVWEPLTMVDYIMLGFVGTVQAFALGVCVHLLSWRHWPPYVTKNVDIVIVMTFGGFGWTISVALDNGLFRRSEGDILAKCYLE 87
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BLAST of mRNA_Ecto-sp13_S_contig7685.18914.1 vs. uniprot
Match: A0A6H5KAT5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.610e-23
Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRVGDLLAACDFE 261
            M++++ WEPL   DF+VLG V+TFQ VAL VCAHL++WRKWPPY+TKNVDVVIIS  A  L T            R GD+LAACDFE
Sbjct:    1 MAEDEVWEPLSTPDFWVLGFVATFQTVALLVCAHLLRWRKWPPYVTKNVDVVIIS--AARLPTRQPG--------RPGDILAACDFE 77
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7685.18914.1 vs. uniprot
Match: D7FU01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU01_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 6.600e-23
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVII 162
            MSD +PWEPL M D+ +LG+V TFQ  ALGVC HL +WRKWPPY+TKNVD+VII
Sbjct:    1 MSDEEPWEPLTMADYLMLGIVGTFQAFALGVCIHLFRWRKWPPYVTKNVDIVII 54
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7685.18914.1 vs. uniprot
Match: D7FTZ6_ECTSI (Similar to regulator of G-protein signaling 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ6_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 6.820e-23
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   49 VLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVDVVIISTFAGILWTATKAIEVGFVRRRVGDLLAAC 252
            +LGMV TFQ  ALGVC HL++WRKWPPY+TKNVD+VII T AG  WT   A++ G + R  GD LA C
Sbjct:    1 MLGMVGTFQAFALGVCIHLIRWRKWPPYVTKNVDIVIIMTLAGFAWTFASALQSGLIPRNEGDFLAIC 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7685.18914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FIS2_ECTSI1.100e-5898.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIR8_ECTSI2.150e-3665.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTZ9_ECTSI5.630e-3363.22RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU03_ECTSI8.480e-3358.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTZ7_ECTSI2.220e-3260.92Similar to regulator of G-protein signaling 16 n=1... [more]
D7FTZ5_ECTSI1.630e-3058.62Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5JJQ0_9PHAE3.090e-2856.32RGS domain-containing protein n=3 Tax=Ectocarpus T... [more]
A0A6H5KAT5_9PHAE4.610e-2359.77RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU01_ECTSI6.600e-2370.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTZ6_ECTSI6.820e-2361.76Similar to regulator of G-protein signaling 16 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7685contigEcto-sp13_S_contig7685:5657..6371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score127.5
Seed ortholog evalue3.1e-27
Seed eggNOG ortholog2880.D7FTZ7
Preferred nameRGS1
Model size261
KEGG koko:K16449
Hectar predicted targeting categorysignal anchor
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
Exons2
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_003140.1
Cds size261
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464038.8358982-CDS-Ecto-sp13_S_contig7685:5656..58211681464038.8358982-CDS-Ecto-sp13_S_contig7685:5656..5821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7685 5657..5821 +
1681464038.853187-CDS-Ecto-sp13_S_contig7685:6275..63711681464038.853187-CDS-Ecto-sp13_S_contig7685:6275..6371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7685 6276..6371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7685.18914.1prot_Ecto-sp13_S_contig7685.18914.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7685 5657..6371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7685.18914.1

>prot_Ecto-sp13_S_contig7685.18914.1 ID=prot_Ecto-sp13_S_contig7685.18914.1|Name=mRNA_Ecto-sp13_S_contig7685.18914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MSDNQPWEPLGMLDFFVLGMVSTFQLVALGVCAHLVKWRKWPPYLTKNVD
VVIISTFAGILWTATKAIEVGFVRRRVGDLLAACDFE
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mRNA from alignment at Ecto-sp13_S_contig7685:5657..6371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7685.18914.1 ID=mRNA_Ecto-sp13_S_contig7685.18914.1|Name=mRNA_Ecto-sp13_S_contig7685.18914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=715bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7685:5657..6371+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGACAACCAGCCGTGGGAACCGCTCGGCATGCTTGACTTCTTCGT
CCTGGGCATGGTTTCCACCTTCCAGCTCGTGGCGCTGGGCGTCTGCGCCC
ACCTCGTCAAGTGGCGGAAGTGGCCCCCCTACCTCACGAAGAACGTAGAC
GTCGTCATCATCTCGGTGAGTCAGCCGCTTCTCAACTCTTGGTTTTGGTT
GGTTTGAGACGTGAGCTGGTGGTGCGTCGGCGGTGGAGTTGGCTCGATGT
GGTCAGCGACGACGGGGGGGGGGTCTCCGGAGCCGTCGTGGTGGACTTGG
TGCTTGCTCATGCCTCGGTCAAGCGGTGTTCGTTTGTTGGCGAAGTGCTG
GCGATTGTCGTCGGTTTCTGCTGGACGAGGACTTGAAACAGCTCTCCCGT
GTCTGTTTTCAAGTTTGTGCTAAGTATCGAAAAAAAACTTATTAGGGATC
TCAACGATACACATCAGTCAAGAAACGTTTCGATCCAGCTCACATACCGC
CCATTGCCGCCGCTGCTGACGCCTTGCCGTTCCGCGTCTTAATTGCCGCG
CTGCCGCCCGCCCCGTCGCCTGCCGGCCTGTCGGTCTCCCCGCCGCTTCA
TTTTTTGGGTTTCCTGTAGACTTTCGCGGGCATTCTCTGGACAGCCACGA
AGGCGATCGAAGTGGGGTTTGTTCGGAGGAGGGTGGGCGACCTGTTGGCC
GCCTGCGACTTTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7685:5657..6371+

>mRNA_Ecto-sp13_S_contig7685.18914.1 ID=mRNA_Ecto-sp13_S_contig7685.18914.1|Name=mRNA_Ecto-sp13_S_contig7685.18914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7685:5657..6371+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGACAACCAGCCGTGGGAACCGCTCGGCATGCTTGACTTCTTCGT
CCTGGGCATGGTTTCCACCTTCCAGCTCGTGGCGCTGGGCGTCTGCGCCC
ACCTCGTCAAGTGGCGGAAGTGGCCCCCCTACCTCACGAAGAACGTAGAC
GTCGTCATCATCTCGACTTTCGCGGGCATTCTCTGGACAGCCACGAAGGC
GATCGAAGTGGGGTTTGTTCGGAGGAGGGTGGGCGACCTGTTGGCCGCCT
GCGACTTTGAG
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