mRNA_Ecto-sp13_S_contig7684.18913.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7684.18913.1
Unique NamemRNA_Ecto-sp13_S_contig7684.18913.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7684.18913.1 vs. uniprot
Match: A0A6H5JHA7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA7_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.250e-51
Identity = 90/102 (88.24%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    1 ATAAHQRRDGGVARRTLRNWIAARLGRSSRSSDDATGAYFLHMLRTDFPEIWAAVAAGTGDTVICVPQSTSLSQEDLTAAEARAHVLTPSEEVPGDFLTLDG 306
            ATAAHQ RDGG+ RR+LR+WIA RLG+S +SS+DATGAYFLHMLRTDFPEIWAAV AGT DTVICVPQSTSLSQEDLTAAEARAHVLTPSEEVPGDFLTLDG
Sbjct:   63 ATAAHQTRDGGMTRRSLRSWIAGRLGQSRKSSNDATGAYFLHMLRTDFPEIWAAVVAGTVDTVICVPQSTSLSQEDLTAAEARAHVLTPSEEVPGDFLTLDG 164
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BLAST of mRNA_Ecto-sp13_S_contig7684.18913.1 vs. uniprot
Match: D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.840e-29
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:  127 MLRTDFPEIWAAVAAGTGDTVICVPQSTSLSQEDLTAAEARAHVLTPSEEVPGDFLTLDG 306
            MLR DFPEIWAAV AGTGDTVICVPQSTSLSQEDLTAAEARAHVLTPSEEVPGDFLTLDG
Sbjct:    1 MLRMDFPEIWAAVVAGTGDTVICVPQSTSLSQEDLTAAEARAHVLTPSEEVPGDFLTLDG 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7684.18913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHA7_9PHAE1.250e-5188.24Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FTN1_ECTSI2.840e-2996.67Similar to hect domain and RLD 4 n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7684contigEcto-sp13_S_contig7684:816..2460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score119.4
Seed ortholog evalue9.8e-25
Seed eggNOG ortholog2880.D7FTN1
Model size306
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Cds size306
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464038.772204-CDS-Ecto-sp13_S_contig7684:815..9171681464038.772204-CDS-Ecto-sp13_S_contig7684:815..917Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7684 816..917 -
1681464038.7845569-CDS-Ecto-sp13_S_contig7684:1519..16211681464038.7845569-CDS-Ecto-sp13_S_contig7684:1519..1621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7684 1520..1621 -
1681464038.7961752-CDS-Ecto-sp13_S_contig7684:2358..24601681464038.7961752-CDS-Ecto-sp13_S_contig7684:2358..2460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7684 2359..2460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7684.18913.1prot_Ecto-sp13_S_contig7684.18913.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7684 816..2460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7684.18913.1

>prot_Ecto-sp13_S_contig7684.18913.1 ID=prot_Ecto-sp13_S_contig7684.18913.1|Name=mRNA_Ecto-sp13_S_contig7684.18913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
ATAAHQRRDGGVARRTLRNWIAARLGRSSRSSDDATGAYFLHMLRTDFPE
IWAAVAAGTGDTVICVPQSTSLSQEDLTAAEARAHVLTPSEEVPGDFLTL
DG
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mRNA from alignment at Ecto-sp13_S_contig7684:816..2460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7684.18913.1 ID=mRNA_Ecto-sp13_S_contig7684.18913.1|Name=mRNA_Ecto-sp13_S_contig7684.18913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7684:816..2460- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTACCGCGGCACACCAAAGGCGCGACGGGGGAGTGGCCCGCAGGACTCT
TCGAAATTGGATAGCTGCGCGTCTCGGACGGTCGAGCAGGAGCTCCGACG
ATGTAAGGGTGGCTCCGTTACGGTGTATTGGTGTTTTGAAAAATGCGGCG
AAACTTCAGAAATCGTACCCTGCTGTTCCTCCGCCAGCCAGCGGTGGCCA
CGGCTCTAGATTCTGGGTACGGGAGCAGTGCTTCGTGTAAGAACCCGTGG
GTTCTCGATGCTATGTGTTGGTGTGTGACCCTGAGCTTCCCGCTCAGGCG
CACCCTCACTGCTAAACGAACCAAACAAAAGGTCGATTTCACGATCCGCA
AGCGGCACGCGTTCAGCATTCTGATGGCGTATCGCGGAGACACAGCCGAC
TCCGTAAAAGTGCAACTCGCAGACGAGTAAAAAGTAAATGCTCCTGTGCA
CACCGAAGTTCTCCCAACAAAAATTCGACCAGGGCATTCACATAGAAGTG
CCATCTCCCCGCGACAAATAACGTGCATTACATGTATTTCACCCGAATAA
AGGCTGAACTACTGTACTGCTCTAGGCGCCAAACCGGGATGTAGACTTGA
ATGCGCAATATTCCCGACGTGTGCGTGGCCATTTCTTTGAATACACGTGG
TCACTTGCCGGAACGAAAAGCCAATCGTGCACGCACGCGCACAGCGCACA
CCGTAGGGTACCTCCCTTAACCCCCCTTTCCGATCTTCATGGGGTCTCCC
GCATGTTCCGCCCCTGAGCGAGGCCTTCTGTTTTCTGCCTTGCCCTCGCC
ACCGTCGCCCTCGTTTCGTGTTCATGTTGGATCCTAAAGGCAACCGGTGC
GTACTTCCTCCACATGCTGCGGACCGATTTCCCCGAGATATGGGCCGCCG
TGGCGGCGGGGACAGGGGACACCGTAATTTGCGTCCCTCAGGTGAGCAAA
TCGTAGAAGTAGACTTGGTGTCGATCGTCAAGGCGGCACCGTCAAAATTC
GTGACTACGGCATAACGCGGACGTCCTCAGCGGTATGCGCGGGGGGGGAT
ATCGGGGACTACCGTAGGTTGCATGAGACACACACCTCCTGGACCGATTT
TCGAAGCTCGATTATTCCACGACGGAGAGGATGCCGAAATTGAAGTACTC
TATTCGTTTTCGGAATGCTCTCGACGAAATGGTTCCAACGCCTCCATTTT
CTGCATCGTCACTGCTTTTCCTGCCGAAGATATCGAGCTCGGAAAATTGG
CCCAGGGAGTGTGATATCTTATGCAACGTACGATATACACAACGGGGTCA
ATCGTACGAAAACCAGTGGTGGCAGGAGACGACGTCGTTTTTGGGCGGTA
CGTCATTCGCCGGGTCGACGTGAAAGCAGAGGCAAAGGGACGTCCTACCG
GTCACACTCTTGCCGGATGCGCGTCTCCCCAGCAGCAAACCAAGCGTCGA
CCGCTCCATTCAAAGCCACTTGCTTCCTATGTGTGTGAACCCCCCCCCCG
GACTGTTCCTTGCCCATTCTTACCTCTCGGGTTCATTCCTCAGAGCACAT
CGCTGTCGCAGGAAGATTTGACAGCTGCGGAGGCAAGGGCGCATGTCCTG
ACCCCCTCGGAAGAAGTGCCCGGAGACTTTCTCACTCTGGACGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7684:816..2460-

>mRNA_Ecto-sp13_S_contig7684.18913.1 ID=mRNA_Ecto-sp13_S_contig7684.18913.1|Name=mRNA_Ecto-sp13_S_contig7684.18913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7684:816..2460- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTACCGCGGCACACCAAAGGCGCGACGGGGGAGTGGCCCGCAGGACTCT
TCGAAATTGGATAGCTGCGCGTCTCGGACGGTCGAGCAGGAGCTCCGACG
ATGCAACCGGTGCGTACTTCCTCCACATGCTGCGGACCGATTTCCCCGAG
ATATGGGCCGCCGTGGCGGCGGGGACAGGGGACACCGTAATTTGCGTCCC
TCAGAGCACATCGCTGTCGCAGGAAGATTTGACAGCTGCGGAGGCAAGGG
CGCATGTCCTGACCCCCTCGGAAGAAGTGCCCGGAGACTTTCTCACTCTG
GACGGC
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