prot_Ecto-sp13_S_contig7681.18911.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7681.18911.1
Unique Nameprot_Ecto-sp13_S_contig7681.18911.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length400
Homology
BLAST of mRNA_Ecto-sp13_S_contig7681.18911.1 vs. uniprot
Match: D8LLV6_ECTSI (tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV6_ECTSI)

HSP 1 Score: 470 bits (1209), Expect = 1.500e-162
Identity = 280/338 (82.84%), Postives = 286/338 (84.62%), Query Frame = 0
Query:    1 MVLLRALLLGDVAKLIFPTHRYEERHQEDRPHDGDGKGIGHILRRSFGKVSEACSPRELPSISSXXXXXXXXXXXXXXXXXXEPAETID--VRCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPIALPPPSPPRGRRGF--EEPPGLLHDRHRLQQTTEEAEDAAGGSLSGEEAFGCGFGXXXXXXXXXXXXXXCGPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDMGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGGGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTPETGLSLPIDTSSLAALAAAEVTALRFSRSRESEG 334
            MVLLRALLLGDVAKL+FPTHR EERH+EDR HDGDGKGIG+IL RSFGKVSEACS RELPSISSXXXXXXXXXX         PA TID  +RCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPIALP             EEPPGLLHD H               SLSGEEAFGCGFGXXXXXXXXXXXXX   PLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVD GHKYGAHYVLYEGPPDECHSRYCVHVTGGGG GDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPT ETGLS PIDTSSLAALAAAEVTALRFSRSR+S+G
Sbjct:    1 MVLLRALLLGDVAKLVFPTHRCEERHREDRRHDGDGKGIGYILERSFGKVSEACSQRELPSISSXXXXXXXXXX---------PAATIDSGLRCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPIALPXXXXXXXXXXXXXEEPPGLLHDWHXXXXXXXXXXXXXXXSLSGEEAFGCGFGXXXXXXXXXXXXX---PLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGRGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTLETGLSPPIDTSSLAALAAAEVTALRFSRSRDSDG 326          
BLAST of mRNA_Ecto-sp13_S_contig7681.18911.1 vs. uniprot
Match: A0A482RRC4_9ARCH (tRNA_int_endo domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRC4_9ARCH)

HSP 1 Score: 72.4 bits (176), Expect = 3.760e-11
Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 0
Query:  197 LLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDMGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGGGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQG 297
            +LS E+ +R C  + P F    AVY HFR  +F V    ++G  + LY  PP   HS + V V  GG    +W  +  +TR+ PDV K+LL+C V    +G
Sbjct:   97 ILSCEDFFRVCVQQDPLFSRRLAVYSHFRALNFVVRSALQFGGSFALYRAPPSRRHSEHLVLVLRGGEA-LTWRELSALTRIAPDVMKTLLLCWVRQEGEG 196          
BLAST of mRNA_Ecto-sp13_S_contig7681.18911.1 vs. uniprot
Match: A0A2R5LL66_9ACAR (tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LL66_9ACAR)

HSP 1 Score: 63.2 bits (152), Expect = 2.240e-7
Identity = 36/106 (33.96%), Postives = 52/106 (49.06%), Query Frame = 0
Query:  195 GPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDMGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGGG---------DSWSHVKTMTRLMPDVAKSLLVCGV 291
            G  L   E W+  C  RP+FPA + VY HFR + + V  G KYG  Y+LY+  P   H+ + V V    G            SW+ +  + RL  +  K++L+C V
Sbjct:  170 GKDLELLELWQRLCTLRPNFPARYTVYHHFRTKGWVVRTGSKYGTDYLLYKDGPPFYHATFSVLVRSTQGAELREVQDCRFRSWTSLSGLVRLNFNSTKTVLLCYV 275          
BLAST of mRNA_Ecto-sp13_S_contig7681.18911.1 vs. uniprot
Match: A0A0W7TI51_9ARCH (Endonuclease n=1 Tax=Candidatus Methanomethylophilus sp. 1R26 TaxID=1769296 RepID=A0A0W7TI51_9ARCH)

HSP 1 Score: 61.6 bits (148), Expect = 1.040e-6
Identity = 36/101 (35.64%), Postives = 46/101 (45.54%), Query Frame = 0
Query:  195 GPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDMGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGGGDS----WSHVKTMTRLMPDVAKSLLVCGV 291
            G +LSA++        + +F      Y   R R   V  G KYG H+ +YEG PDECH+RY VH        DS    W  +    RL   V K +L C V
Sbjct:  239 GEVLSADDIKSIGRKSQNEFGLRLRAYEDLRSRGLIVKTGFKYGTHFRVYEGSPDECHARYLVHAFQ-----DSKVAMWPEISRTVRLSGGVRKEILFCRV 334          
BLAST of mRNA_Ecto-sp13_S_contig7681.18911.1 vs. uniprot
Match: M4YIW8_THEXX (tRNA intron endonuclease n=1 Tax=Thermoplasmatales archaeon (strain BRNA1) TaxID=1054217 RepID=M4YIW8_THEXX)

HSP 1 Score: 57.8 bits (138), Expect = 1.430e-5
Identity = 29/83 (34.94%), Postives = 37/83 (44.58%), Query Frame = 0
Query:  209 NRRPDFPAMFAVYRHFRIRSFTVDMGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGGGDSWSHVKTMTRLMPDVAKSLLVCGV 291
              + +F      Y   R R   V  G KYG H+ +YEG PDECH+RY VH          W  +    RL   V K +L C +
Sbjct:  254 KNQDEFDLRLKAYYDLRARGLVVKTGFKYGTHFRVYEGSPDECHARYLVHAVTASKIA-MWPEISRTVRLSGGVRKEILFCRI 335          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7681.18911.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LLV6_ECTSI1.500e-16282.84tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A482RRC4_9ARCH3.760e-1137.62tRNA_int_endo domain-containing protein (Fragment)... [more]
A0A2R5LL66_9ACAR2.240e-733.96tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros ... [more]
A0A0W7TI51_9ARCH1.040e-635.64Endonuclease n=1 Tax=Candidatus Methanomethylophil... [more]
M4YIW8_THEXX1.430e-534.94tRNA intron endonuclease n=1 Tax=Thermoplasmatales... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 62..82
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 216..291
e-value: 2.5E-12
score: 46.7
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 211..297
e-value: 2.0E-14
score: 55.4
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 66..106
coord: 197..330
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 212..293

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7681contigEcto-sp13_S_contig7681:1975..4684 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7681.18911.1mRNA_Ecto-sp13_S_contig7681.18911.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7681 1724..4684 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7681.18911.1 ID=prot_Ecto-sp13_S_contig7681.18911.1|Name=mRNA_Ecto-sp13_S_contig7681.18911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=400bp
MVLLRALLLGDVAKLIFPTHRYEERHQEDRPHDGDGKGIGHILRRSFGKV
SEACSPRELPSISSSQQQQQQQQQQQQQQQQEEPAETIDVRCLQLSLEEA
FYLAHVDESLALAVPRANLVVPTAPIALPPPSPPRGRRGFEEPPGLLHDR
HRLQQTTEEAEDAAGGSLSGEEAFGCGFGGGEEGGGRGGGGGGCGPLLSA
EEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDMGHKYGAHYVLYEGPPDE
CHSRYCVHVTGGGGGGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTP
ETGLSLPIDTSSLAALAAAEVTALRFSRSRESEGGGGGAKRAARRESGTI
LKARRPVIESTGSGGGNSAKKKRKGKKTERTSGHGAPAWFLAPERRTAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006677tRNA_intron_Endonuc_cat-like
IPR011856tRNA_endonuc-like_dom_sf
IPR006676tRNA_splic
IPR036167tRNA_intron_Endo_cat-like_sf