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Homology
BLAST of mRNA_Ecto-sp13_S_contig7681.18911.1 vs. uniprot
Match: D8LLV6_ECTSI (tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV6_ECTSI) HSP 1 Score: 470 bits (1209), Expect = 3.140e-161 Identity = 280/338 (82.84%), Postives = 286/338 (84.62%), Query Frame = 1
Query: 1 MVLLRALLLGDVAKLIFPTHRYEERHQEDRPHDGDGKGIGHILRRSFGKVSEACSPRELPSISSXXXXXXXXXXXXXXXXXXEPAETID--VRCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPIALPPPSPPRGRRGF--EEPPGLLHDRHRLQQTTEEAEDAAGGSLSGEEAFGCGFGXXXXXXXXXXXXXXCGPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDMGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGGGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTPETGLSLPIDTSSLAALAAAEVTALRFSRSRESEG 1002
MVLLRALLLGDVAKL+FPTHR EERH+EDR HDGDGKGIG+IL RSFGKVSEACS RELPSISSXXXXXXXXXX PA TID +RCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPIALP EEPPGLLHD H SLSGEEAFGCGFGXXXXXXXXXXXXX PLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVD GHKYGAHYVLYEGPPDECHSRYCVHVTGGGG GDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPT ETGLS PIDTSSLAALAAAEVTALRFSRSR+S+G
Sbjct: 1 MVLLRALLLGDVAKLVFPTHRCEERHREDRRHDGDGKGIGYILERSFGKVSEACSQRELPSISSXXXXXXXXXX---------PAATIDSGLRCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPIALPXXXXXXXXXXXXXEEPPGLLHDWHXXXXXXXXXXXXXXXSLSGEEAFGCGFGXXXXXXXXXXXXX---PLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGRGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTLETGLSPPIDTSSLAALAAAEVTALRFSRSRDSDG 326
BLAST of mRNA_Ecto-sp13_S_contig7681.18911.1 vs. uniprot
Match: A0A482RRC4_9ARCH (tRNA_int_endo domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRC4_9ARCH) HSP 1 Score: 72.4 bits (176), Expect = 5.230e-11 Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 1
Query: 589 LLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDMGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGGGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQG 891
+LS E+ +R C + P F AVY HFR +F V ++G + LY PP HS + V V GG +W + +TR+ PDV K+LL+C V +G
Sbjct: 97 ILSCEDFFRVCVQQDPLFSRRLAVYSHFRALNFVVRSALQFGGSFALYRAPPSRRHSEHLVLVLRGGEA-LTWRELSALTRIAPDVMKTLLLCWVRQEGEG 196
BLAST of mRNA_Ecto-sp13_S_contig7681.18911.1 vs. uniprot
Match: A0A2R5LL66_9ACAR (tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LL66_9ACAR) HSP 1 Score: 63.2 bits (152), Expect = 3.190e-7 Identity = 36/106 (33.96%), Postives = 52/106 (49.06%), Query Frame = 1
Query: 583 GPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDMGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGGG---------DSWSHVKTMTRLMPDVAKSLLVCGV 873
G L E W+ C RP+FPA + VY HFR + + V G KYG Y+LY+ P H+ + V V G SW+ + + RL + K++L+C V
Sbjct: 170 GKDLELLELWQRLCTLRPNFPARYTVYHHFRTKGWVVRTGSKYGTDYLLYKDGPPFYHATFSVLVRSTQGAELREVQDCRFRSWTSLSGLVRLNFNSTKTVLLCYV 275
BLAST of mRNA_Ecto-sp13_S_contig7681.18911.1 vs. uniprot
Match: A0A0W7TI51_9ARCH (Endonuclease n=1 Tax=Candidatus Methanomethylophilus sp. 1R26 TaxID=1769296 RepID=A0A0W7TI51_9ARCH) HSP 1 Score: 61.6 bits (148), Expect = 1.530e-6 Identity = 36/101 (35.64%), Postives = 46/101 (45.54%), Query Frame = 1
Query: 583 GPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDMGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGGGDS----WSHVKTMTRLMPDVAKSLLVCGV 873
G +LSA++ + +F Y R R V G KYG H+ +YEG PDECH+RY VH DS W + RL V K +L C V
Sbjct: 239 GEVLSADDIKSIGRKSQNEFGLRLRAYEDLRSRGLIVKTGFKYGTHFRVYEGSPDECHARYLVHAFQ-----DSKVAMWPEISRTVRLSGGVRKEILFCRV 334
BLAST of mRNA_Ecto-sp13_S_contig7681.18911.1 vs. uniprot
Match: M4YIW8_THEXX (tRNA intron endonuclease n=1 Tax=Thermoplasmatales archaeon (strain BRNA1) TaxID=1054217 RepID=M4YIW8_THEXX) HSP 1 Score: 57.8 bits (138), Expect = 2.010e-5 Identity = 29/83 (34.94%), Postives = 37/83 (44.58%), Query Frame = 1
Query: 625 NRRPDFPAMFAVYRHFRIRSFTVDMGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGGGDSWSHVKTMTRLMPDVAKSLLVCGV 873
+ +F Y R R V G KYG H+ +YEG PDECH+RY VH W + RL V K +L C +
Sbjct: 254 KNQDEFDLRLKAYYDLRARGLVVKTGFKYGTHFRVYEGSPDECHARYLVHAVTASKIA-MWPEISRTVRLSGGVRKEILFCRI 335
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 478.0 |
| Seed ortholog evalue | 4.3e-132 |
| Seed eggNOG ortholog | 2880.D8LLV6 |
| Preferred name | TSEN2 |
| Model size | 1451 |
| KEGG rclass | RC00002,RC00055,RC00523 |
| KEGG ko | ko:K01868,ko:K06133,ko:K15322,ko:K15436 |
| KEGG Reaction | R01625,R03663 |
| KEGG Pathway | ko00770,ko00970,map00770,map00970 |
| KEGG Module | M00359,M00360 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000003,GO:0000213,GO:0000214,GO:0000278,GO:0000281,GO:0000379,GO:0000394,GO:0000910,GO:0003006,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0004549,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006379,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0008033,GO:0008150,GO:0008152,GO:0008356,GO:0008380,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010069,GO:0010070,GO:0010154,GO:0010467,GO:0015630,GO:0016020,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0016892,GO:0016894,GO:0019867,GO:0022402,GO:0022414,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051301,GO:0061458,GO:0061640,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098588,GO:0098805,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1902555,GO:1903047,GO:1905348 |
| Exons | 5 |
| EggNOG free text desc. | tRNA-intron endonuclease activity |
| EggNOG OGs | COG1676@1,KOG4685@2759 |
| Ec32 ortholog description | tRNA endonuclease-like domain |
| Ec32 ortholog | Ec-14_001840.1 |
| EC | 3.1.27.9,6.1.1.3 |
| Cds size | 1200 |
| COG Functional cat. | J |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01007,ko03016 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464038.472483-UTR-Ecto-sp13_S_contig7681:1723..1974 | 1681464038.472483-UTR-Ecto-sp13_S_contig7681:1723..1974 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig7681 1724..1974 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464038.4845972-CDS-Ecto-sp13_S_contig7681:1974..2334 | 1681464038.4845972-CDS-Ecto-sp13_S_contig7681:1974..2334 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7681 1975..2334 - |
| 1681464038.4940293-CDS-Ecto-sp13_S_contig7681:2662..2819 | 1681464038.4940293-CDS-Ecto-sp13_S_contig7681:2662..2819 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7681 2663..2819 - |
| 1681464038.507081-CDS-Ecto-sp13_S_contig7681:3253..3639 | 1681464038.507081-CDS-Ecto-sp13_S_contig7681:3253..3639 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7681 3254..3639 - |
| 1681464038.5161455-CDS-Ecto-sp13_S_contig7681:3859..4000 | 1681464038.5161455-CDS-Ecto-sp13_S_contig7681:3859..4000 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7681 3860..4000 - |
| 1681464038.527935-CDS-Ecto-sp13_S_contig7681:4528..4684 | 1681464038.527935-CDS-Ecto-sp13_S_contig7681:4528..4684 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7681 4529..4684 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7681.18911.1 >prot_Ecto-sp13_S_contig7681.18911.1 ID=prot_Ecto-sp13_S_contig7681.18911.1|Name=mRNA_Ecto-sp13_S_contig7681.18911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=400bp
MVLLRALLLGDVAKLIFPTHRYEERHQEDRPHDGDGKGIGHILRRSFGKV SEACSPRELPSISSSQQQQQQQQQQQQQQQQEEPAETIDVRCLQLSLEEA FYLAHVDESLALAVPRANLVVPTAPIALPPPSPPRGRRGFEEPPGLLHDR HRLQQTTEEAEDAAGGSLSGEEAFGCGFGGGEEGGGRGGGGGGCGPLLSA EEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDMGHKYGAHYVLYEGPPDE CHSRYCVHVTGGGGGGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTP ETGLSLPIDTSSLAALAAAEVTALRFSRSRESEGGGGGAKRAARRESGTI LKARRPVIESTGSGGGNSAKKKRKGKKTERTSGHGAPAWFLAPERRTAK* back to topmRNA from alignment at Ecto-sp13_S_contig7681:1724..4684- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig7681.18911.1 ID=mRNA_Ecto-sp13_S_contig7681.18911.1|Name=mRNA_Ecto-sp13_S_contig7681.18911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2961bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7681:1724..4684- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGTCTTGTTACGAGCCCTGCTTCTAGGGGATGTGGCCAAGCTGATTTT
TCCAACCCATAGGTACGAAGAACGTCACCAAGAAGACCGCCCACACGATG
GTGACGGAAAGGGCATTGGACACATCCTGCGGAGGAGCTTCGGCAAGGTT
TCCGAGGTGCGGCCACCGGGTTTTATTATTTTTGAATAGTTAAATCCCGG
CAGTCTCACGCCAAATGATCACACCAGATATACATAGATGTGACCATGGA
TCGGTGCCAAGACAGCGGAACCCGAGAATGGTAGGGGGCTGCTGACCATA
CCGCCCAGGGTTGCCCGGCAGGCACAAACGCGGCCCACTTTCGGAAGCCT
CAAAACGTGTTGTGAACGAATGTGTAAACATGCATGGCATGTGCTCGCCA
AACTTGCTGCAGACTTCGTAGACGCGCCGCGCCGTTTGTTCATCCGACGA
AACAGAGTAACCCCGTAGTGCGCAAAGTGCGCTTTAGCGCTGTGAACGTG
AGGTACAATGGACCAGTGGGGAATAACAGGTAAACCGGCAGGATTTTGGT
TACGCCGCACATGCCCCGACGCCGCCCCCCCAAGAACTTTCCAAAGAACG
GTCCACCGCCCGTAGCACATAGCGATAACGAAGAGCGAACGCGGTTCAAT
GGCAATCATGTCCCACCCCTCTTATTCCAAGCAGGCTTGTTCTCCACGAG
AGTTACCTTCGATTTCGTCGTCGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAACAAGAGGAGCCGGCCGAGACGATCGATGTACG
GTGCCTGCAGCTGTCTCTGGAAGAGGTATGCACTATAAGCAGTTGTCCTG
ATGCTTCGATGTCACCGATACCGAGGTTCGTACCAGCGGTGCCTTTTTGT
TGCACTCCCGACTCAAGGTGAAGTACCTCTCCCTACAGCCAGCAGTAGCC
TTGACACGAAGTCACCATGATTTGGAGCTTCAGAAGCGGGAGAGGGATGC
CTCACCATCGTCCATCCCCTGCCCCCCGCGCGGCCTTATCCGCAGGCGTT
TTACCTTGCGCATGTCGACGAGTCCCTGGCGCTAGCCGTCCCGAGGGCCA
ACCTTGTCGTTCCTACAGCCCCGATCGCCTTGCCGCCGCCGTCGCCGCCG
CGGGGAAGACGCGGGTTCGAAGAGCCCCCTGGCCTCCTCCATGATCGGCA
CCGCCTACAACAAACCACGGAGGAAGCGGAAGATGCCGCCGGGGGTTCCC
TGAGCGGAGAAGAAGCGTTCGGCTGCGGTTTCGGCGGTGGCGAAGAGGGC
GGCGGCAGAGGTGGCGGCGGCGGCGGCTGCGGCCCGCTGTTGAGCGCGGA
GGAGGCATGGCGTTACTGCTGCAACCGTCGTCCGGATTTTCCGGCAATGT
TTGCGGTGTACCGCCACTTTCGGATACGGAGGTAGGTACGTACCGCGCCG
CAGCGGGACGCCCGGACGTCTCTCGTTGCTTTCCTCCAAGACACATAACT
GTGGGAGGCTGTAGGCGGAACGGCGACGGCTCGAGTTGTACTGGCACACC
CGCAGCAGGACTCGTTGTGCCATGTTTGACCAGAGCGAACAGCAAGGGGA
CACCACACGCGCAAATGCTCGGACCCCGCGTGACGGCACGTTTTCGCGGG
CTATCCGGCCTTCCTTTTCTCTGTCTGGTCTGCTGCGCTAAGTTCACCGA
CCAGGAGGTCGAGACACGACAAGTACATGCATGCGTAGTAACATGTGACG
TCCTGTTGGACGCTGACGACGAAAACTTTGCGATTTCTACATGTCTACAT
TTATACTAGTGCATAGCTTGACGATTTCGATGAACGGGGCCCCCCACCTC
CGCGACGCGAAACAGTTTCACGGTGGACATGGGGCACAAGTACGGGGCCC
ATTACGTGCTGTACGAGGGGCCGCCCGACGAGTGCCATTCGCGCTACTGC
GTGCACGTCACGGGGGGTGGCGGAGGCGGCGATTCGTGGAGCCACGTCAA
GACCATGACACGACTCATGCCGGTGAGATTCTCATGAGTTGTCGTTCGTT
GCTCTTCTTCTCAAGAGTATTTTTTTCTGCAAATGCGCGTGTTTCAGACG
GAATAGTAGGAAAATACACGGGAGGAACATATACACAATGGTATTGCTAA
TTGTTTTGGGTCCAGAGAGCAGACGACGGGACCTCCTCTGGCCTCCATGC
CTGTTTTCGAAGACACAAGAAAAACGGTACCCGAAGGAGAAGCTTCAAAC
GAAACCGGGGCGCCGCTCGATCATTTCGCCAAACTCTGTGTGACCGTACG
CGTGTGTGCGCTCTCGCCGCCGCGTCTCTGCTGTTACTCTCGGCACGCAG
GATGTCGCAAAGTCTCTCCTGGTATGCGGGGTGACGTATCGTCCTCAAGG
ACCAACACCGGAGACAGGCTTGTCCCTGCCCATCGACACGTCGTCCCTGG
CAGCCCTCGCGGCGGCAGAGGTGACGGCGTTGCGTTTCTCCAGGTCCAGG
GAATCCGAGGGTGGGGGCGGCGGCGCGAAGAGAGCCGCCCGCAGAGAGAG
TGGTACGATTCTAAAAGCCAGGAGGCCTGTCATCGAATCAACCGGCTCTG
GCGGCGGGAATTCCGCCAAGAAAAAGAGAAAGGGCAAGAAAACCGAGCGA
ACTAGCGGGCATGGAGCACCGGCTTGGTTTTTGGCCCCGGAGAGGAGAAC
GGCGAAGTGATCCTGAAGCACAACTGTGGCATGTACGGACTAGTGCCCTA
GCGGTGGGTACGAACGAAGTCGTAAAAGAAAAGCGTCTGCTCATGTGTGT
TCGACCCAAGGTTCGTTCTTGTTAGCCACCTCGCGGCCCGCGCACGCGTC
CAGTCCATGAAAATTTCCCATGTAGAATGGGAAATTTCCGTGTGGGGAAC
GTGAGGAAGAGCGCGACTTAGTGATTGTATCCGCGGCAGTCGAGAGCTAG
CGGCTGGATCC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig7681:1724..4684- >mRNA_Ecto-sp13_S_contig7681.18911.1 ID=mRNA_Ecto-sp13_S_contig7681.18911.1|Name=mRNA_Ecto-sp13_S_contig7681.18911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1200bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7681:1724..4684- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGTCTTGTTACGAGCCCTGCTTCTAGGGGATGTGGCCAAGCTGATTTT TCCAACCCATAGGTACGAAGAACGTCACCAAGAAGACCGCCCACACGATG GTGACGGAAAGGGCATTGGACACATCCTGCGGAGGAGCTTCGGCAAGGTT TCCGAGGCTTGTTCTCCACGAGAGTTACCTTCGATTTCGTCGTCGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAAGAGGAGC CGGCCGAGACGATCGATGTACGGTGCCTGCAGCTGTCTCTGGAAGAGGCG TTTTACCTTGCGCATGTCGACGAGTCCCTGGCGCTAGCCGTCCCGAGGGC CAACCTTGTCGTTCCTACAGCCCCGATCGCCTTGCCGCCGCCGTCGCCGC CGCGGGGAAGACGCGGGTTCGAAGAGCCCCCTGGCCTCCTCCATGATCGG CACCGCCTACAACAAACCACGGAGGAAGCGGAAGATGCCGCCGGGGGTTC CCTGAGCGGAGAAGAAGCGTTCGGCTGCGGTTTCGGCGGTGGCGAAGAGG GCGGCGGCAGAGGTGGCGGCGGCGGCGGCTGCGGCCCGCTGTTGAGCGCG GAGGAGGCATGGCGTTACTGCTGCAACCGTCGTCCGGATTTTCCGGCAAT GTTTGCGGTGTACCGCCACTTTCGGATACGGAGTTTCACGGTGGACATGG GGCACAAGTACGGGGCCCATTACGTGCTGTACGAGGGGCCGCCCGACGAG TGCCATTCGCGCTACTGCGTGCACGTCACGGGGGGTGGCGGAGGCGGCGA TTCGTGGAGCCACGTCAAGACCATGACACGACTCATGCCGGATGTCGCAA AGTCTCTCCTGGTATGCGGGGTGACGTATCGTCCTCAAGGACCAACACCG GAGACAGGCTTGTCCCTGCCCATCGACACGTCGTCCCTGGCAGCCCTCGC GGCGGCAGAGGTGACGGCGTTGCGTTTCTCCAGGTCCAGGGAATCCGAGG GTGGGGGCGGCGGCGCGAAGAGAGCCGCCCGCAGAGAGAGTGGTACGATT CTAAAAGCCAGGAGGCCTGTCATCGAATCAACCGGCTCTGGCGGCGGGAA TTCCGCCAAGAAAAAGAGAAAGGGCAAGAAAACCGAGCGAACTAGCGGGC ATGGAGCACCGGCTTGGTTTTTGGCCCCGGAGAGGAGAACGGCGAAGTGA back to top
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