mRNA_Ecto-sp13_S_contig1225.1891.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1225.1891.1
Unique NamemRNA_Ecto-sp13_S_contig1225.1891.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1225.1891.1 vs. uniprot
Match: D7FYK9_ECTSI (Transmembrane protein 267 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYK9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 7.330e-16
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 GVRGIDEGCHVLVVDAAAMLPVFALGGPTTRMKTEAPELLFY-SRGAVW 144
            G+RGIDEGCHV+VVDAAAML VFALGGP TRM+TEAPELLF+ S  AVW
Sbjct:  153 GIRGIDEGCHVVVVDAAAMLRVFALGGPGTRMETEAPELLFHCSSSAVW 201
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BLAST of mRNA_Ecto-sp13_S_contig1225.1891.1 vs. uniprot
Match: A0A6H5KR51_9PHAE (Transmembrane protein 267 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR51_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 5.340e-11
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:    3 STRHRRGLPCTRRRCRGDVACVRARRADNEDEDGGTRAAFLL 128
            +TRHRRGLPCTRRR RGDVACVRARRA+NED D GTRA+F L
Sbjct:  314 NTRHRRGLPCTRRRRRGDVACVRARRAENEDGDVGTRASFSL 355
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1225.1891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYK9_ECTSI7.330e-1681.63Transmembrane protein 267 n=1 Tax=Ectocarpus silic... [more]
A0A6H5KR51_9PHAE5.340e-1183.33Transmembrane protein 267 n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1225contigEcto-sp13_S_contig1225:186..923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size740
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.4121602-UTR-Ecto-sp13_S_contig1225:185..4851681462651.4121602-UTR-Ecto-sp13_S_contig1225:185..485Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1225 186..485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.4207366-CDS-Ecto-sp13_S_contig1225:485..9231681462651.4207366-CDS-Ecto-sp13_S_contig1225:485..923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1225 486..923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1225.1891.1prot_Ecto-sp13_S_contig1225.1891.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1225 486..923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1225.1891.1

>prot_Ecto-sp13_S_contig1225.1891.1 ID=prot_Ecto-sp13_S_contig1225.1891.1|Name=mRNA_Ecto-sp13_S_contig1225.1891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MCVLVFFQRRGIDRARRLTNERRESCRRDEDANALSCHHAPPEGGAGGGS
TAKSSLQIQSECVPRAENVNSDIVLHLHSMWARLAEKTRENRQMPGERGQ
QIGKENRGGSSGTPKLTSATSGVFDLLGRNPSLLGHVSQAASEQMI
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mRNA from alignment at Ecto-sp13_S_contig1225:186..923+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1225.1891.1 ID=mRNA_Ecto-sp13_S_contig1225.1891.1|Name=mRNA_Ecto-sp13_S_contig1225.1891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1225:186..923+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGTACGCGGCATCGACGAGGGCTGCCATGTACTCGTCGTAGATGCCGC
GGCGATGTTGCCTGTGTTCGCGCTAGGAGGGCCGACAACGAGGATGAAGA
CGGAGGCACCAGAGCTGCTTTTTTACTCTAGGGGTGCCGTTTGGTAATGG
CGGTGGTGTTCGGATGATGACCCCTCTTTTTCGTTGGCCTGTCACGTGGT
TGGCTACCCTGTCCGACTTGTGAAGAAACTTTTTGCTTTTTGGGTGCCGA
ACACCTATTTAGCAATAGGGAAGGGTACGGCGCGGCTACGGAAGGCATGT
ATGTGTGTTCTTGTGTTCTTTCAACGACGTGGCATTGATCGCGCTAGGCG
GCTGACCAATGAACGTCGTGAGTCTTGTAGGCGGGATGAAGACGCGAACG
CGCTTTCTTGCCATCATGCTCCCCCGGAGGGTGGGGCGGGGGGTGGTTCG
ACGGCAAAGTCCAGTCTCCAGATTCAAAGTGAATGCGTTCCCCGCGCGGA
GAACGTAAATTCAGATATTGTGCTGCATTTACATAGCATGTGGGCGAGAC
TGGCGGAGAAAACACGTGAAAACAGACAGATGCCGGGCGAAAGAGGACAA
CAAATTGGAAAAGAGAACAGGGGAGGGAGCTCTGGGACTCCAAAATTGAC
ATCAGCGACGTCAGGAGTTTTCGATCTACTCGGCAGGAACCCATCCTTGC
TGGGGCACGTTTCACAAGCGGCAAGTGAACAAATGATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1225:186..923+

>mRNA_Ecto-sp13_S_contig1225.1891.1 ID=mRNA_Ecto-sp13_S_contig1225.1891.1|Name=mRNA_Ecto-sp13_S_contig1225.1891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1225:186..923+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTGTTCTTGTGTTCTTTCAACGACGTGGCATTGATCGCGCTAGGCG
GCTGACCAATGAACGTCGTGAGTCTTGTAGGCGGGATGAAGACGCGAACG
CGCTTTCTTGCCATCATGCTCCCCCGGAGGGTGGGGCGGGGGGTGGTTCG
ACGGCAAAGTCCAGTCTCCAGATTCAAAGTGAATGCGTTCCCCGCGCGGA
GAACGTAAATTCAGATATTGTGCTGCATTTACATAGCATGTGGGCGAGAC
TGGCGGAGAAAACACGTGAAAACAGACAGATGCCGGGCGAAAGAGGACAA
CAAATTGGAAAAGAGAACAGGGGAGGGAGCTCTGGGACTCCAAAATTGAC
ATCAGCGACGTCAGGAGTTTTCGATCTACTCGGCAGGAACCCATCCTTGC
TGGGGCACGTTTCACAAGCGGCAAGTGAACAAATGATC
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