mRNA_Ecto-sp13_S_contig768.18908.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig768.18908.1
Unique NamemRNA_Ecto-sp13_S_contig768.18908.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig768.18908.1 vs. uniprot
Match: D7FTC8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTC8_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 2.260e-106
Identity = 172/190 (90.53%), Postives = 179/190 (94.21%), Query Frame = 1 
Query:    1 MARGKPKRPGPQEDHATAKEDEAEVSDYELARLARIKRNEAFMAALSISALKTAPSTPAVAAKKRSPSKRPRDPASRTAPSRTSKRLRSRAADPEDLVALSGTWISSLAGATTKPEGAPSTFRQDYGPALNPEEAQERMEVLKGHIDARDEAKAGTASYNHCVHRVRTMSDVSLARRVRTIERARGAQAK 570
            MARGK KRPGPQ+DHATAKE EAEVSDYELARLARIKRNEAFMA LSISALKTAPST A A KKRSPSKRPRDPASRTAPSRTSKRLRS+AADPE+LVAL GTW SSLAGATTKP GAPS+FR DYGP L+PEEA+ERMEVLKGHIDARDEAKAGTASYNHC+HRVRTMSDVSLARRVRTIERARGAQAK
Sbjct:    1 MARGKTKRPGPQQDHATAKEGEAEVSDYELARLARIKRNEAFMATLSISALKTAPSTAAAATKKRSPSKRPRDPASRTAPSRTSKRLRSQAADPEELVALPGTWTSSLAGATTKPGGAPSSFRHDYGPELDPEEAEERMEVLKGHIDARDEAKAGTASYNHCLHRVRTMSDVSLARRVRTIERARGAQAK 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig768.18908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTC8_ECTSI2.260e-10690.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig768contigEcto-sp13_S_contig768:3..2736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score319.7
Seed ortholog evalue9.2e-85
Seed eggNOG ortholog2880.D7FTC8
Model size570
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2E4F7@1,2SC7W@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_000890.1
Cds size570
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464037.9670868-CDS-Ecto-sp13_S_contig768:2..411681464037.9670868-CDS-Ecto-sp13_S_contig768:2..41Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig768 3..41 -
1681464037.9795732-CDS-Ecto-sp13_S_contig768:498..6091681464037.9795732-CDS-Ecto-sp13_S_contig768:498..609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig768 499..609 -
1681464037.9900093-CDS-Ecto-sp13_S_contig768:821..8951681464037.9900093-CDS-Ecto-sp13_S_contig768:821..895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig768 822..895 -
1681464038.0004373-CDS-Ecto-sp13_S_contig768:1677..18671681464038.0004373-CDS-Ecto-sp13_S_contig768:1677..1867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig768 1678..1867 -
1681464038.0106328-CDS-Ecto-sp13_S_contig768:2580..27361681464038.0106328-CDS-Ecto-sp13_S_contig768:2580..2736Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig768 2581..2736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig768.18908.1prot_Ecto-sp13_S_contig768.18908.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig768 3..2736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig768.18908.1

>prot_Ecto-sp13_S_contig768.18908.1 ID=prot_Ecto-sp13_S_contig768.18908.1|Name=mRNA_Ecto-sp13_S_contig768.18908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
MARGKPKRPGPQEDHATAKEDEAEVSDYELARLARIKRNEAFMAALSISA
LKTAPSTPAVAAKKRSPSKRPRDPASRTAPSRTSKRLRSRAADPEDLVAL
SGTWISSLAGATTKPEGAPSTFRQDYGPALNPEEAQERMEVLKGHIDARD
EAKAGTASYNHCVHRVRTMSDVSLARRVRTIERARGAQAK
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mRNA from alignment at Ecto-sp13_S_contig768:3..2736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig768.18908.1 ID=mRNA_Ecto-sp13_S_contig768.18908.1|Name=mRNA_Ecto-sp13_S_contig768.18908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2734bp|location=Sequence derived from alignment at Ecto-sp13_S_contig768:3..2736- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCGTGGAAAGCCGAAAAGGCCCGGCCCGCAAGAAGATCATGCAAC
GGCAAAGGAGGACGAAGCTGAAGTCTCCGATTATGAGCTCGCTCGACTAG
CTCGAATCAAACGGAATGAGGCGTTCATGGCAGCGTTGTCCATCAGTGCG
CTAAAGGTAGGTGTGTGGGGGCGGGTGTATTGGAAGTGTGAGTATTGGGA
GTACACGGATGACAATCTTGCAGAGAGCACTTCTTACGGCACTGCAGATG
TGCAGGATACCCGGCCAAAATGGTTGATATTGCGTGTAGGTAGACATTCC
ATTGACGAATGCTGTTGCATCTCCAATGGATGTACAGGCAGACCCTCCGC
ATTGGCAGTGGGATGCTAATATAATACATATCCTGAACGGCATCACCGCG
CTTGCTGTACTGTATCATACCCCTACGTGAGGATGAGTGGACGACCAAGG
CTCCCGTGAACCAAACGAAAACAACAGACGGTTTTTCATCAATTGGACGC
GTTTTAACGTTTTACTGCTTACCAAATTTTGGATCCTCTCGGTGGGCAGG
GGGGGGGCGAGGGCAACATTCGCGAATTCGTAGCCAACAGAGACGTGTGA
GTAGTAGACTTCCCTTGGTTCTTTGCCGCGGTGCGATTTTCGATCGTCTG
CTGCCCACTGCTGTGGTTGCGATACTCTGTCCTCTGACGCCGGTATCGCC
TTGGTATGCTTCTTTGCGAGGTAGGTGTGGCACATGACACTCGAGACAAC
TCGAAATGTGTTGACTGTCTCTCGCCAGTCGCAGAATCGCACCCAAATGT
TATCATCCTGACTGCAAGTTTGTTGACGTGGTATCAATAATCACGCCTCG
CCCTCAACAACAAGGACAGACAGCACCTTCCACACCGGCAGTGGCGGCGA
AGAAGCGCTCGCCCTCGAAGCGACCACGGGACCCAGCCTCGAGGACGGCA
CCGTCTCGAACGTCGAAGCGACTAAGAAGCCGAGCGGCGGATCCCGAAGA
CTTGGTGGCATTATCTGGCACTTGGATCTCCAGTCTTGCGGGTGCAACTA
CTAAGCCGGGTAAGGAAAGAACCATGCGTGGGCAGGCGACAAGGACCATT
CGCCAGATGCCGAGAGAGCGGGGAGGGGTCCCCAGCGGGTGTCGTCGCAT
TCGTTACGCATAGGAGCTTCGACAGCACTGGCAGCCGGAGGGGAGATTTA
GGATCTGGCTATCCAGAGAGAGGGGAGATGGAATGAAGTAGGGCATGGAC
ACGTACAAGGTGTACACCCTCAAAGACGCACAGGACTCGGTGGTTGTGTC
ACGTAAGTTAACCGAAGCCGGAAAGCGCTCGCAAGCGCAACCGGGCCAAG
GTACTACTGTAGATGGAACGGACCACCAGAACCGTAGGACCTGACCCGCG
AAGTAGGAGCATTTCTACGGTACTGACCGTTGGGGTTTTGGGGCATCCTA
GATCGGCTCCACACTTTCCACTACAACTAGTAGCGGGGAGAAATTTTGGC
ACCACCGGACGTGCCAAGCGAGTTGGACCAGACGGGGGTGCGGTCCTGGT
TTCACGTCGTTGCGCTTAGAAGTTGTTTTCTGATCACCAGCTTGAATGTC
AATACATGGCATTTCGGAAACATGTCGCAAAACATGGGTGACTCAGGTGA
CTCAGGAAAACGGGATTTCGTTGTGCAGATTCGCGGTGCTACGTGGTGTG
TAGCCCTTGCTATTTTCGCGACAGCTGCACACGAAGAGTTAACACAGCCC
GAAGTCTATCTTTATCCGCTTTCCTCGCATGTCCTCAACCCGACGGTGTA
TCCTCTGTTCGCTTGCTCTCCGCCCTGCTCACGATCGTCAGAAGGCGCAC
CTTCAACGTTTCGACAAGACTACGGGCCAGCGCTGAATCCAGAAGAAGCT
CAAGAGAGGATGGAGGTGAGGTTGTTCAAGGTTGATGTCAGAGACGAGAG
GGAAAAATAGCGCCCCGCGTGCGCTCCACTGGGCTGCGGAAGAAGGCACG
TGTATGGTTGGTGAAACCGCCTCTTGTCTTCAGACTCGACGAGGTGCACT
GACTTTTTAGCTGCGAAGCAATTGTAACCACGAGTTAATCATTCTTTTAA
CGCCCGTAGGCATGGCTGTTTGTGCAGGTGTTGAAAGGTCACATCGATGC
CAGAGATGAAGCCAAGGCGGGTACAGCGAGTTACAACCACTGCGTTCACC
GCGTGCGGACGATGTCCGATGTCAGCCTCGCACGCAGGGTACGTTTGTGC
GCAGCAGGGGTTCATAGCAGCACACGCATGCATGTGTTGGATGCCGGTGA
TGACCGACGAGGTGGGGGGATAGGTTATGGTGAATCGTTTCGTCCACATC
TTGTTTCCGTCGAACCGATCCCATGTTGCTGCTTTTCCAAAATACCCTTT
CCCTTTTCGCTAGTCGCTAGTGCGGCCCAGGAACAGAGTAGTGACAAAGC
CCCTATGCCTTTTTGCGATCCGGGGTTTTATCCTTCGACCCACTACTACT
CTACGGCGGTCGGGGTTGGCTGTCTTCATCCACGCCACGAGCATATTCGG
GTGTTGTGCTCTGCTGCTGAGGCCGGCTGCTAGGATAGCGAATTATTTCA
TGGCAACGCCCCATGTGTGTGTGCGCGCGGCTACGACGACGAATTATTCC
ATGGCACATCGCCACATATGTACGCCTGCACGCGGGATGGGACAGGTGCG
CACCATCGAGCGAGCGCGAGGAGCCCAGGCGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig768:3..2736-

>mRNA_Ecto-sp13_S_contig768.18908.1 ID=mRNA_Ecto-sp13_S_contig768.18908.1|Name=mRNA_Ecto-sp13_S_contig768.18908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig768:3..2736- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCGTGGAAAGCCGAAAAGGCCCGGCCCGCAAGAAGATCATGCAAC
GGCAAAGGAGGACGAAGCTGAAGTCTCCGATTATGAGCTCGCTCGACTAG
CTCGAATCAAACGGAATGAGGCGTTCATGGCAGCGTTGTCCATCAGTGCG
CTAAAGACAGCACCTTCCACACCGGCAGTGGCGGCGAAGAAGCGCTCGCC
CTCGAAGCGACCACGGGACCCAGCCTCGAGGACGGCACCGTCTCGAACGT
CGAAGCGACTAAGAAGCCGAGCGGCGGATCCCGAAGACTTGGTGGCATTA
TCTGGCACTTGGATCTCCAGTCTTGCGGGTGCAACTACTAAGCCGGAAGG
CGCACCTTCAACGTTTCGACAAGACTACGGGCCAGCGCTGAATCCAGAAG
AAGCTCAAGAGAGGATGGAGGTGTTGAAAGGTCACATCGATGCCAGAGAT
GAAGCCAAGGCGGGTACAGCGAGTTACAACCACTGCGTTCACCGCGTGCG
GACGATGTCCGATGTCAGCCTCGCACGCAGGGTGCGCACCATCGAGCGAG
CGCGAGGAGCCCAGGCGAAG
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