mRNA_Ecto-sp13_S_contig7672.18903.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7672.18903.1
Unique NamemRNA_Ecto-sp13_S_contig7672.18903.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7672.18903.1 vs. uniprot
Match: A0A6H5JWA9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA9_9PHAE)

HSP 1 Score: 414 bits (1064), Expect = 1.310e-138
Identity = 250/290 (86.21%), Postives = 259/290 (89.31%), Query Frame = 2 
Query:  161 MSAREGWEGESRVIYQDVGARVSRLQARRAAAYFAGRKRESEEHVVDNSGGDENIGSXXXXXXXXXXXXXXXXXXXNALGSSGKRFVSLMFDPPGRYNEARHRLPEAFAIDAIGKERRMPYYGLDIGPLDVGSVIVLRGAPRGEHLAAYLVGEEEHQVFIVGNGVACAPTLLGDGFLRDREATDASPESGPGGRGXXXXXXXXXXXXXIS-----NGDDARRNPSAGKTPFSSPPDSGSRSQAENFERAAHIRGEALRELVGIGGGGAGGTSNGXSGEAGGATAHELFRQ 1015
            MSAREGWEGESRVIY+DVGARVSRLQARRAAAYFAGRKRESE+HV  N+GGD++IGS  XXXXXXXXXXX      NALGSSGKRFVSLMFDPPGRYNEARH+LPEAF +DA GKERRMPYYGLDIGPLDVGSVIVLRGAPRG+HLAAYLVGEEEHQVFIVGNGVACAPTLLGDGFLRDREATDAS ESG G   XXXXXXXXXXXXX       NGDDARR PSAGKT  SS PDSGSRSQA+N ERAAHIRGEALRELVGIGGGGAGGTSNG SGEA GATAHELFRQ
Sbjct:    1 MSAREGWEGESRVIYEDVGARVSRLQARRAAAYFAGRKRESEKHVAGNNGGDKDIGSGSXXXXXXXXXXXRSGRG-NALGSSGKRFVSLMFDPPGRYNEARHQLPEAFVVDATGKERRMPYYGLDIGPLDVGSVIVLRGAPRGQHLAAYLVGEEEHQVFIVGNGVACAPTLLGDGFLRDREATDASQESGRGXXXXXXXXXXXXXXXXXXXXXXXNGDDARRKPSAGKTRLSSSPDSGSRSQAKNLERAAHIRGEALRELVGIGGGGAGGTSNGGSGEARGATAHELFRQ 289
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BLAST of mRNA_Ecto-sp13_S_contig7672.18903.1 vs. uniprot
Match: D8LMU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU4_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 2.280e-55
Identity = 137/197 (69.54%), Postives = 139/197 (70.56%), Query Frame = 2 
Query:  428 MFDPPGRYNEARHRLPEAFAIDAIGKERRMPYYGLDIGPLDVGSVIVLRGAPRGEHLAAYLVGEEEHQVFIVGNGVACAPTLLGDGFLRDREATDASPESGPGGRGXXXXXXXXXXXXXISNG-DDARRNPSAGKTPFSSPPDSGSRSQAENFERAAHIRGEALRELVGIGGGGAGGTSNGXSGEAGGATAHELFRQ 1015
            MFDPPGRYN ARHRLPEAF +DA GKERRMPYYGLDIGPLDVGSVIVLRGAPRGEHLAAYLVGEEEHQ                          D S ESG G   XXXXXXXXXXXXX     DDARRNPSAGK PFSS PDSGSRSQAEN ERAAHIRGEALRELVGIGG         X      A+AHELFRQ
Sbjct:    1 MFDPPGRYNGARHRLPEAFVLDATGKERRMPYYGLDIGPLDVGSVIVLRGAPRGEHLAAYLVGEEEHQ------------------------GADGSQESGRGXXXXXXXXXXXXXXXXXXXXXDDARRNPSAGKPPFSSSPDSGSRSQAENLERAAHIRGEALRELVGIGGXXXXXXXXXXXXXXXXASAHELFRQ 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7672.18903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWA9_9PHAE1.310e-13886.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LMU4_ECTSI2.280e-5569.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7672contigEcto-sp13_S_contig7672:1610..4963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1016
Hectar predicted targeting categoryother localisation
Exons4
Cds size855
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464037.5228-CDS-Ecto-sp13_S_contig7672:1609..19251681464037.5228-CDS-Ecto-sp13_S_contig7672:1609..1925Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7672 1610..1925 -
1681464037.5355268-CDS-Ecto-sp13_S_contig7672:2293..23611681464037.5355268-CDS-Ecto-sp13_S_contig7672:2293..2361Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7672 2294..2361 -
1681464037.5465167-CDS-Ecto-sp13_S_contig7672:2680..31511681464037.5465167-CDS-Ecto-sp13_S_contig7672:2680..3151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7672 2681..3151 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464037.5571434-UTR-Ecto-sp13_S_contig7672:3151..31921681464037.5571434-UTR-Ecto-sp13_S_contig7672:3151..3192Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7672 3152..3192 -
1681464037.567037-UTR-Ecto-sp13_S_contig7672:4844..49631681464037.567037-UTR-Ecto-sp13_S_contig7672:4844..4963Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7672 4845..4963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7672.18903.1prot_Ecto-sp13_S_contig7672.18903.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7672 1610..3151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7672.18903.1

>prot_Ecto-sp13_S_contig7672.18903.1 ID=prot_Ecto-sp13_S_contig7672.18903.1|Name=mRNA_Ecto-sp13_S_contig7672.18903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=285bp
MSAREGWEGESRVIYQDVGARVSRLQARRAAAYFAGRKRESEEHVVDNSG
GDENIGSGSGGGGDGDGGGGSGGGSGNALGSSGKRFVSLMFDPPGRYNEA
RHRLPEAFAIDAIGKERRMPYYGLDIGPLDVGSVIVLRGAPRGEHLAAYL
VGEEEHQVFIVGNGVACAPTLLGDGFLRDREATDASPESGPGGRGGGAGS
SLGGGGGGISNGDDARRNPSAGKTPFSSPPDSGSRSQAENFERAAHIRGE
ALRELVGIGGGGAGGTSNGGSGEAGGATAHELFRQ
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mRNA from alignment at Ecto-sp13_S_contig7672:1610..4963-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7672.18903.1 ID=mRNA_Ecto-sp13_S_contig7672.18903.1|Name=mRNA_Ecto-sp13_S_contig7672.18903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7672:1610..4963- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGCAAAACGACTCAAATACGCAGCAGGATCAACAAAACTTAGTGCCTC
TAGAGTTGCAGACTGCTTGGGAGCTGGGTTTTACGTCGAAGGAGATTACA
CGGACGGATATACACTAGGGTGAGTGTGTCAAGGATGTCGGCCGCTGTCT
CTTTTGGGACGGGCCAGCTGGAAGCCTCGTTTGTTCCGAGAAGGCACAAG
TGCCGCCGTTGAAGGCCCCTCTCTCACGAAGGGCTCGCGTGGGGTAAGAC
AACGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGAAGGAGGAACTTCTGC
TGGGTCCTATGAATATCCGCCATCGCTCGTCTGCTGTATGTCACGGACAA
TGTAGTCTCGATCCTATTTGGCAACTGAATGCTGGGTTCGAGATTGTGCG
GAAAAACTAGACGTAACGGCGGTAGCCAGCAAGCACGCGGCACCGAGCGC
AGTCTAGCCTAGAAGAAAATAGAGGGGATGCAACAACATCGGAGTCGCTC
CTCCCGGAAATAAAATCCGGTGGCCTTCTTCTTGAAGGCAAGGCAGAACA
CCACGGCACGTGATGTGGTAACTGCCGCGTGACTCGGCCTCTGTGAAGCC
TACTACATTACTTAGCATTGCCTATCGATATTCATACCTCTTATTTCCGT
AGACTCGAAGTAGAAGGGAGACAACTGGCGGCATGACTCGTCCTTACGAC
TGCAACACGTGTCGCTCGGAAAGAGAGGACCGGTGTGCAGGTGCATTGCG
GGAAGTTAATGCATGCTATTACGTGCGGTGGGGTGGTAACGATGGAACTG
GCCAGATCGCCCCGTGCTGGTGTTGTACGTTTACGCCAGTCCGCCGTTCC
TGAGTGAAGGTTGATTCCTCATGTCCGTGCCTTTCTGCCTGTAGACAACA
ATTGAGCGCCCGCACTATAGGATGTGGCGGTTGCAATGATAGGTTCATGC
TCAACATTATATCAAAAGAGAAGAACGCGAGTCACCTTTTGTGAGCCCGG
TTAAGGACCTACACTAAGAACCTACCATACCTTTGTATGTAAAAGTAGCC
ACAAGTTGTAGCCCACTTACCAGGTAGTTTGGAACTTACAGAACCCCGGC
CTTGACCAACACTGGAGGTTCTTACAGGTGCGGGCGCTAACTCTGCATGT
CTCGCAAGTCAGTAGACTTGCGGATGGCAAACAAACCCCACCGACAATCC
TGTCTTCGCTCCGGGACCCTCTCCCCAAACGCCTGCCGCCTCACGGCAGC
ACCCTGTACCTGACTTCTCCCTCTGTGACTACTGCTGTACCACTGCAAAA
AGCACGCTTGTTTTGCCAGCATCTGCCGTGTTGCCGACGACGGGTTTTTG
CAGCAAGCCTGGTGGTTTTTCTTCCCCCGCACGACTTGCTGATTCAAGCG
ACTCACAGCAGCAGCTGCCGGACGCCGAACACAGCCACCGAAGACAAGCA
CAGCAGTGGTGCTGTAGTAGTGCTATTTCAGCCTGTTTCCCGCGAGACGT
CTCGCTGTACTCTGTGCGAGGATCGCTACACGCTCTGCATAGCCGCTGCC
GAACCGTCCGAACTTTCTTCCGGACATGGGGTACAGCAGGTTCACAACTG
GATGTGGATGTTGATGAAATTTTCAATGGGGGCGTTGTTATGGTTACACC
CGCTACGTGTCCCGGCGGCACCTCACTGCTTACCCAAACGCCCGCATACC
TCTCTGCCCGTGCTCTGTTCCAGTTGCCTCGCCAACCTCTCTCGCGCCCC
GTGACCGCGGTTTGCACACAGGCTAGGCTCACGGACACCGCATCCCCCAC
ACGGCCCACACGATGTCCGCGCGCGAGGGTTGGGAAGGAGAATCGAGGGT
AATCTACCAAGACGTCGGCGCCCGCGTGAGCCGCCTCCAGGCCAGAAGGG
CCGCCGCGTACTTTGCCGGGCGCAAGAGAGAGAGCGAGGAACACGTCGTA
GACAACAGCGGCGGCGACGAGAACATTGGCAGCGGTAGCGGCGGCGGCGG
TGATGGCGACGGCGGCGGCGGCAGCGGCGGCGGTAGCGGCAATGCCCTCG
GCAGCAGCGGCAAACGATTTGTCAGCCTAATGTTCGATCCCCCGGGCCGT
TACAACGAGGCGAGGCATCGACTCCCGGAGGCTTTCGCCATCGACGCCAT
CGGCAAAGAGCGGCGGATGCCTTACTACGGCCTCGATATCGGCCCCCTCG
ACGTGGGGTCCGTGATAGTGCTGCGAGGTGCTCCTCGTGGAGAGCACCTG
GCGGCGTACTTGGTGGGAGAGGAGGAGCACCAGGTATCGGTTTTGTTTTT
CCACGACGACTGGGTTGTTGTGTATGGTCGGGGAACTAGGATGTACGTCG
TAGTTTTTGTGGTGTGTGTGCCCCGTGATTCCGAAAAGTGGGAAGCGGAC
ACGCCCCCGGTCTTCGATTCCCCGAGTGCCTCCTCCGCTTCACCGCTACG
TACCCAACCCCACCGCTCCACAGCTCATCGCTCGGACGATGTCGTCACTG
CAACACCTGTTGCTGGTACAAGTTTTGTCCTGCTACGATCACCACCACTG
TTTTTACACCTCCGACTGGTGCTGCTGCTTCTGCTTCTTCGCCGCCGATT
AGGTGTTCATCGTGGGCAATGGAGTGGCGTGCGCGCCAACCCTGCTTGGT
GACGGGTTTCTTCGCGACAGGTAGGCTTGACGGTATTTTTGCTAGGCGAG
GCAAGTACGCTCACTCCCAAGTCTCACCGCCTGAGATTGCTGTTTGCAGC
GCTCGAGGCGAAGCACCCCTGGGTAACATTGACCCCTCTCTCTCTATGTA
TGTATATATATTTGCTACCGGTGCTTTTTCCTCTGTCCACGTGGCGAGAA
CTAAGGTTAACCGCGAACAACGTGCGAAGCTGTGAAAGATTCCGCTTCCG
TGTGCATCATTTCCAGTTTATATCTCCACCCCTGTGGAATCTTCTCTATA
AATTCGTCAAACGCGCGTTCTCCTCCTCCTGAATTCCGTGAACTCGCTGC
CGCTATTCCTGCCGCGGCTTTACCTCCTCCTGACAAAGGGAGGCGACGGA
TGCGAGCCCGGAGAGTGGGCCAGGAGGAAGAGGAGGAGGAGCGGGGAGTT
CCCTCGGAGGAGGCGGTGGTGGCATCAGCAACGGCGACGACGCCCGACGA
AACCCCTCCGCAGGAAAAACACCATTTTCGTCGCCGCCGGATAGCGGTAG
TCGCAGCCAAGCCGAAAACTTCGAGCGAGCCGCCCATATACGAGGAGAGG
CGCTGCGGGAGCTGGTTGGGATCGGAGGAGGCGGAGCAGGAGGGACCTCG
AACGGCGGTAGCGGCGAGGCCGGGGGGGCGACTGCGCACGAGCTGTTTCG
GCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7672:1610..4963-

>mRNA_Ecto-sp13_S_contig7672.18903.1 ID=mRNA_Ecto-sp13_S_contig7672.18903.1|Name=mRNA_Ecto-sp13_S_contig7672.18903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=855bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7672:1610..4963- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGCGCGCGAGGGTTGGGAAGGAGAATCGAGGGTAATCTACCAAGA
CGTCGGCGCCCGCGTGAGCCGCCTCCAGGCCAGAAGGGCCGCCGCGTACT
TTGCCGGGCGCAAGAGAGAGAGCGAGGAACACGTCGTAGACAACAGCGGC
GGCGACGAGAACATTGGCAGCGGTAGCGGCGGCGGCGGTGATGGCGACGG
CGGCGGCGGCAGCGGCGGCGGTAGCGGCAATGCCCTCGGCAGCAGCGGCA
AACGATTTGTCAGCCTAATGTTCGATCCCCCGGGCCGTTACAACGAGGCG
AGGCATCGACTCCCGGAGGCTTTCGCCATCGACGCCATCGGCAAAGAGCG
GCGGATGCCTTACTACGGCCTCGATATCGGCCCCCTCGACGTGGGGTCCG
TGATAGTGCTGCGAGGTGCTCCTCGTGGAGAGCACCTGGCGGCGTACTTG
GTGGGAGAGGAGGAGCACCAGGTGTTCATCGTGGGCAATGGAGTGGCGTG
CGCGCCAACCCTGCTTGGTGACGGGTTTCTTCGCGACAGGGAGGCGACGG
ATGCGAGCCCGGAGAGTGGGCCAGGAGGAAGAGGAGGAGGAGCGGGGAGT
TCCCTCGGAGGAGGCGGTGGTGGCATCAGCAACGGCGACGACGCCCGACG
AAACCCCTCCGCAGGAAAAACACCATTTTCGTCGCCGCCGGATAGCGGTA
GTCGCAGCCAAGCCGAAAACTTCGAGCGAGCCGCCCATATACGAGGAGAG
GCGCTGCGGGAGCTGGTTGGGATCGGAGGAGGCGGAGCAGGAGGGACCTC
GAACGGCGGTAGCGGCGAGGCCGGGGGGGCGACTGCGCACGAGCTGTTTC
GGCAG
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