mRNA_Ecto-sp13_S_contig767.18898.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig767.18898.1
Unique NamemRNA_Ecto-sp13_S_contig767.18898.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig767.18898.1 vs. uniprot
Match: D8LLF8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF8_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 8.180e-108
Identity = 148/164 (90.24%), Postives = 157/164 (95.73%), Query Frame = 1 
Query:   82 MGFFSCLGLGRRAAPRRRPVSRDNDRAAPGTPAGSPPATVNQWTEYRDAAGRPWWRSNLTGMWTDMKPHGNNNNHNMVFPFVQPPQQQVWPVGPIPGRFPQPPPWVVPAGPVVVVPMKPASPKKKEEAKDDKRGHWEEFVSDEGGKKFWRHTGTEKIRNSDPFT 573
            MGF SCLGLGRRAAPRRRPVSRDND AAPGTPAGSPPAT NQWTE+RDAAGRPWWRSNLTGMWTD+KPH NNNNHN+VFPF+QPPQQQVWPVGPIPGRFPQPPPWVVPAGPVVVVP+KPASPKK+EE KDDK+G WEEF+SDE GKKFWRHTGT+KIRNSDPFT
Sbjct:    1 MGFLSCLGLGRRAAPRRRPVSRDNDAAAPGTPAGSPPATANQWTEFRDAAGRPWWRSNLTGMWTDIKPHVNNNNHNVVFPFMQPPQQQVWPVGPIPGRFPQPPPWVVPAGPVVVVPVKPASPKKEEE-KDDKKGRWEEFISDEDGKKFWRHTGTKKIRNSDPFT 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig767.18898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLF8_ECTSI8.180e-10890.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig767contigEcto-sp13_S_contig767:4818..6690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size654
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_002480.1
Cds size495
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig767.18898.1prot_Ecto-sp13_S_contig767.18898.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig767 5138..6609 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464037.0538116-UTR-Ecto-sp13_S_contig767:4817..48931681464037.0538116-UTR-Ecto-sp13_S_contig767:4817..4893Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig767 4818..4893 -
1681464037.0736473-UTR-Ecto-sp13_S_contig767:5135..51371681464037.0736473-UTR-Ecto-sp13_S_contig767:5135..5137Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig767 5136..5137 -
1681464037.120965-UTR-Ecto-sp13_S_contig767:6609..66901681464037.120965-UTR-Ecto-sp13_S_contig767:6609..6690Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig767 6610..6690 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464037.084342-CDS-Ecto-sp13_S_contig767:5137..54681681464037.084342-CDS-Ecto-sp13_S_contig767:5137..5468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig767 5138..5468 -
1681464037.0950003-CDS-Ecto-sp13_S_contig767:6080..61771681464037.0950003-CDS-Ecto-sp13_S_contig767:6080..6177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig767 6081..6177 -
1681464037.105467-CDS-Ecto-sp13_S_contig767:6542..66091681464037.105467-CDS-Ecto-sp13_S_contig767:6542..6609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig767 6543..6609 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig767.18898.1

>prot_Ecto-sp13_S_contig767.18898.1 ID=prot_Ecto-sp13_S_contig767.18898.1|Name=mRNA_Ecto-sp13_S_contig767.18898.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
MGFFSCLGLGRRAAPRRRPVSRDNDRAAPGTPAGSPPATVNQWTEYRDAA
GRPWWRSNLTGMWTDMKPHGNNNNHNMVFPFVQPPQQQVWPVGPIPGRFP
QPPPWVVPAGPVVVVPMKPASPKKKEEAKDDKRGHWEEFVSDEGGKKFWR
HTGTEKIRNSDPFT*
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mRNA from alignment at Ecto-sp13_S_contig767:4818..6690-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig767.18898.1 ID=mRNA_Ecto-sp13_S_contig767.18898.1|Name=mRNA_Ecto-sp13_S_contig767.18898.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig767:4818..6690- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTACACACACACCAGCAGCAACAACAGCGAGACACACAGCAGTCCGTC
AGCGAAGACCACCTCGCAACACAGCACTCCCATGGGGTTCTTCTCCTGCC
TTGGGTTGGGCAGGCGGGCCGCACCTCGTCGTCGTCCTGTCTCTCGAGGT
AAGTCTATCGGTGTTGCTGTGGTGCGCACATGTGCATGCATGTGGCGGCG
GGACGACCAGAGAGAGAGAGAGAGAGAGCAAAGATAAGGTGGAAGAAGAG
AGGGGAGCGAGAAGTTGAGGAAAACGGATGGATTTGTGCCGCAACTCTTA
TGATGCCCTGCATTGCAACCTGCTAACCTGCTGTCAAGGTTTTGTTAGTC
GACGATGCGATAACCCAGGCACTACTGCTGCTGTATGCCAAAGTTTTCTT
GCAACAGCAGTATTCGTGCGTGTTTTTGTTCTGTGACAATTTTCCCTTCG
CTGCTGATGGTCTCCTTCTCTCTCGCCCTTTTGATGATTGATTCCGTTCT
GACGTGCGGACAGACAACGACCGGGCTGCACCGGGGACACCCGCCGGAAG
CCCTCCGGCCACCGTGAATCAATGGACCGAGTACCGGGATGCCGCGGGCC
GCCCCTGGTGGTGAGTATGATGGATGTTTCGTTGCAAGTCTTCAATGAAG
GAATAGGAGAGGGGCTGGAGAAGAAATACAACAAAACCTGTTCGGCAGCA
CTGCTGTAATTTGTAGTTTCGTACAGCTTCCGACTCAGTACTTTGTATTG
AAAACAGTACTTCGTAGGTTACAAGAGGGGCTATCCCACATAGGTCAAAG
TATGCAACGTTGTGTGGTTTGCTAGCTTCTCTTTTTACTTTCCTTCCCAA
CCTCCCCATTCAGACACGAGCGCATGCCCCGATGCAGGCAATCTTGATAA
TCTATGTACCTTGAGGACGCAACTTGCATCAGCACTGATTTGTAGTTTTT
CGTGCACGTGGCGGGGTGTGGACCTCGTTTGTGCGGCCTTCTTTTTCTTT
ACCTTTGGTAACCAACTGTCGTCGAGCATGATGCGCGTCCTGGACTACAA
GCAGACGTAGCCTGTACGACTCAACATTCCCCCTTCCTCCCCCCCCCCCT
GGCCTACCTTCTCCCTTTTTCTGTGCGTCTTTTTTTCGATTTTTTTTTTT
TCTTATATAATTGCATACCACAAGCTCCCTTTTGCCCCCCCCCCTCCCCC
CTTCCTCCCCCCTACCTTGCAGGCGAAGCAACCTCACAGGAATGTGGACC
GACATGAAGCCGCACGGCAACAACAACAACCACAACATGGTCTTCCCCTT
CGTGCAGCCGCCGCAGCAGCAGGTCTGGCCGGTGGGTCCCATCCCCGGCC
GCTTCCCCCAGCCGCCTCCCTGGGTCGTCCCGGCGGGTCCGGTGGTTGTG
GTCCCAATGAAGCCGGCGTCGCCGAAAAAGAAGGAGGAGGCGAAGGACGA
CAAGAGGGGGCACTGGGAGGAATTCGTCTCAGACGAGGGTGGGAAGAAGT
TCTGGAGGCACACGGGGACGGAGAAGATTAGGAACTCCGACCCCTTCACC
TGAGTGTATCCGCCAGGGCGGGGGGGGGGGGGGCAGAAGGGAGGGAGAGA
GGAAGATAGCGGGGGGGGGGTGGGGGGGGCGGCGGGGGGGGGGAAAAAGG
AAGAGGGGCACGTCTGAGAAATCGGNNNNNNNNNNCCCCCCCCCGCCACC
CCCTCCCCCCCCCCCCCCGCCGCGCCCCCGCGCCCCCGCCCCTTTCCGGG
GGGGTGGCCGGGGGGGGGGGGGGGGGGGGGGGGCAGAAGGGAGTGAGTGA
AGGAGTTAGCGGGAGGGAGATAGATGCGGCTCCGGAGAGGGGGAGACAAG
AAGAGGGTCAGTCCTGACAAAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig767:4818..6690-

>mRNA_Ecto-sp13_S_contig767.18898.1 ID=mRNA_Ecto-sp13_S_contig767.18898.1|Name=mRNA_Ecto-sp13_S_contig767.18898.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig767:4818..6690- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGTTCTTCTCCTGCCTTGGGTTGGGCAGGCGGGCCGCACCTCGTCG
TCGTCCTGTCTCTCGAGACAACGACCGGGCTGCACCGGGGACACCCGCCG
GAAGCCCTCCGGCCACCGTGAATCAATGGACCGAGTACCGGGATGCCGCG
GGCCGCCCCTGGTGGCGAAGCAACCTCACAGGAATGTGGACCGACATGAA
GCCGCACGGCAACAACAACAACCACAACATGGTCTTCCCCTTCGTGCAGC
CGCCGCAGCAGCAGGTCTGGCCGGTGGGTCCCATCCCCGGCCGCTTCCCC
CAGCCGCCTCCCTGGGTCGTCCCGGCGGGTCCGGTGGTTGTGGTCCCAAT
GAAGCCGGCGTCGCCGAAAAAGAAGGAGGAGGCGAAGGACGACAAGAGGG
GGCACTGGGAGGAATTCGTCTCAGACGAGGGTGGGAAGAAGTTCTGGAGG
CACACGGGGACGGAGAAGATTAGGAACTCCGACCCCTTCACCTGA
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