mRNA_Ecto-sp13_S_contig7666.18895.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7666.18895.1
Unique NamemRNA_Ecto-sp13_S_contig7666.18895.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7666.18895.1 vs. uniprot
Match: D8LTD6_ECTSI (Protein kinase domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD6_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.540e-21
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 3 
Query:  222 MSWLEGSPRHQGSKAKPAPGSSARGLWSSSTTRTYGSSRRPTSSLRGSAASG 377
            MSWLEGSP+HQGSKAKPAPGSSARGLWSSSTTRTYGSSRRPTSSLRGSAASG
Sbjct:    1 MSWLEGSPKHQGSKAKPAPGSSARGLWSSSTTRTYGSSRRPTSSLRGSAASG 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7666.18895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTD6_ECTSI2.540e-2198.08Protein kinase domain-containing protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7666contigEcto-sp13_S_contig7666:2022..3799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score100.5
Seed ortholog evalue2.4e-19
Seed eggNOG ortholog2880.D8LTD6
Model size378
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG OGs28UP7@1,2R1E5@2759
Cds size156
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464036.9039342-UTR-Ecto-sp13_S_contig7666:2021..22421681464036.9039342-UTR-Ecto-sp13_S_contig7666:2021..2242Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7666 2022..2242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464036.916043-CDS-Ecto-sp13_S_contig7666:2242..23401681464036.916043-CDS-Ecto-sp13_S_contig7666:2242..2340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7666 2243..2340 +
1681464036.927129-CDS-Ecto-sp13_S_contig7666:3741..37991681464036.927129-CDS-Ecto-sp13_S_contig7666:3741..3799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7666 3742..3799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7666.18895.1prot_Ecto-sp13_S_contig7666.18895.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7666 2243..3799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7666.18895.1

>prot_Ecto-sp13_S_contig7666.18895.1 ID=prot_Ecto-sp13_S_contig7666.18895.1|Name=mRNA_Ecto-sp13_S_contig7666.18895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
MSWLEGSPRHQGSKAKPAPGSSARGLWSSSTTRTYGSSRRPTSSLRGSAA
SG
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mRNA from alignment at Ecto-sp13_S_contig7666:2022..3799+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7666.18895.1 ID=mRNA_Ecto-sp13_S_contig7666.18895.1|Name=mRNA_Ecto-sp13_S_contig7666.18895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1778bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7666:2022..3799+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGCACGCTGTCGCTGCAGTGGGACTACGCGGGGTGACGATGACGAATT
AGGCACAGATTCGTCTTTTGCGTGTGCGAGGTATCGCTTGATCGGCGACT
TGCCGTCGAAAGCAGCGCTGAGCGTGGTTTTGGTGCGTGGCGCCAAAAGT
CAAACTGCAAACGGCGGTTAGCCTCTTGGTCACTTTTTCTAGGTGGCGGC
GGGTAGAGAGGGCCCGAGGCCATGTCGTGGCTGGAGGGATCGCCGAGGCA
CCAGGGATCCAAGGCCAAGCCAGCGCCGGGATCGAGTGCAAGAGGTTTGT
GGTCGTCCTCTACGACCAGGTGCGAGACGACAACGAGCACTATAGCTCTA
TTGCTGTGGAAAGATGAACAACGTTTACGATTCCTCTGCTGCAGCTGCTG
CTGCTGCTTCTGCAACCCGTAGTTTCAGAGAGGCCTCCCTCTTAGTCTCC
TTGCTCTCTCCGTTTGCTCTGTCTGACCGAGCCATGCACGGAGCATTGCA
AACGGATGGCATTGTCCAGCGGCTGCTGCTTCGGCCGTTGCGTTTGTGGC
CTTCCGACGCCGGCTGTATCTGGCGAGGAAGATGCATATTTTACATGCAC
ACACAGCCAGCACAGCTCTACGAAAACTAACCCGTCTCTCAACGCACTCT
TTGAATTCCCCCAGACAAGCGTTGATGGCCAAGAGGATGACACGGCTCTC
CTACCGTTGCCCCCGATCTCAACGACATGCAACGATCGGCATCTAGCCCA
TGGCGATATGCAAACAGCTGTACTGTCTTTTTTCGCAGGCCCATGTGTTG
CACAATGACGCGCGCCGGCTGGCCGGTTAAGTGAAACATATGCTTCGGGA
TTCCAAAGTGCGTACCGTCTCTCACGACCCGTACCCTCGAGTCCGGCGGT
GCCACACCTACTCTCACGGTTTTGCGGACACCCGCTTTGCAAGTCTAGTA
CATACGGTTGCGGCCAAGCCTGCGTGGGCGCTGCTGCGCGCTAGCTGCGC
ACGGGTGCTAGGCAGCAGTGTGCCACATTCTGTGATTGGTTCTGTGATCC
TGTGATGCTACTCCTGTACAACGTGCTCAGAGAGCCAGTATTGCTGCCCA
GCACATGGAGGGTGACTGGAATTGACAGGTTTTTTAAGACAATTTCTTCG
CGGGTCGTTTTTCAAAATTTTGTATCATGTACACAGCAGTTTTTCAGTCC
TTCGTTTATCTGAAAACATATTTCCGAAGGGGGCACTACCTCAAAGGTAC
TTTTGAACATGAGAGGCAACACCGTGTCACGCCTGAGCCATGCCGACCTG
TAAAAGTACCTCAAATATACACGTGATGGTGGTTCCCAGTACTAGAAACT
ACAAATGTTTCGTGTCCGGAGGCGCGTAAACCCATTGGGACTGGGAGGGA
AGTCGACCTGTAGATGCCGACGTGCTGCTGTGTATCCTTTCCGCGTGCTC
TCTTCTTGCTTCCCTCTCGGGCGGCATGCATGAAACAAGAACATTCACCA
TTACCTAAACCAAAGCACGGCAGGACGTCTGATGAGAACGACGTAGAGGC
ATGTGTTTTTTCGGTCTCATGTCACACCACAAATTGTGAAGACACATGCC
CTCCCCCAATGCTTTTCCTTCGTCCATGACATCGGCAAAGATAGCACACC
TGACAAGAGCCAAAGTGTTATCGAAGTCACACCGCTTCTGCTCTCCCCTC
GCTTTTGTGGCAACTACCAGGACGTATGGAAGCAGCAGGCGACCAACGTC
GAGCCTGCGCGGCTCCGCAGCCTCCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7666:2022..3799+

>mRNA_Ecto-sp13_S_contig7666.18895.1 ID=mRNA_Ecto-sp13_S_contig7666.18895.1|Name=mRNA_Ecto-sp13_S_contig7666.18895.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7666:2022..3799+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTGGCTGGAGGGATCGCCGAGGCACCAGGGATCCAAGGCCAAGCC
AGCGCCGGGATCGAGTGCAAGAGGTTTGTGGTCGTCCTCTACGACCAGGA
CGTATGGAAGCAGCAGGCGACCAACGTCGAGCCTGCGCGGCTCCGCAGCC
TCCGGG
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