prot_Ecto-sp13_S_contig76652.18894.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig76652.18894.1
Unique Nameprot_Ecto-sp13_S_contig76652.18894.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length103
Homology
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: D1J786_ECTSI (30S ribosomal protein S20, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J786_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 4.200e-58
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFKMS 102
            MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDL+VGQSPSDSVKKKLL SLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFK S
Sbjct:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLIVGQSPSDSVKKKLLASLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFKTS 102          
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A6B7EV20_9PHAE (30S ribosomal protein S20 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV20_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.820e-47
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 0
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTF 99
            MANSRSAKKRIKINKRNNIQNN+YKSLIKYYEK+HLNLI EY+N+ +++VGQ  SD +KKKLL SLALVVSRIDKAVKKKI HKNTA RKKNNLFKKTF
Sbjct:    1 MANSRSAKKRIKINKRNNIQNNSYKSLIKYYEKIHLNLIKEYKNNNEIIVGQPISDEIKKKLLTSLALVVSRIDKAVKKKIVHKNTATRKKNNLFKKTF 99          
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A344PF99_9PHAE (30S ribosomal protein S20 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PF99_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.820e-43
Identity = 79/102 (77.45%), Postives = 88/102 (86.27%), Query Frame = 0
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFKMS 102
            MAN+RSAKKRI+INKRNNIQNN+YKSLIKYYEK HLNL+ EY+NS + V GQS  D+VKK LL S ALV SR+D+AVKKKI HKNTAIRKKNNLFKKTF  S
Sbjct:    1 MANNRSAKKRIRINKRNNIQNNSYKSLIKYYEKTHLNLLKEYKNSENFVEGQSTPDNVKKTLLDSFALVASRLDRAVKKKIIHKNTAIRKKNNLFKKTFTTS 102          
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A7T8JK05_SCYLO (30S ribosomal protein S20, chloroplastic n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A7T8JK05_SCYLO)

HSP 1 Score: 144 bits (363), Expect = 7.420e-43
Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 0
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFKMS 102
            MANSRSAKKRIKIN+RNNIQNN+YKSLIKYYEK+HLNLI EY++S + V GQ   D++KK LL S ALV SRID+AVKKKI HKNTAIRKKNNLF+KTF  S
Sbjct:    1 MANSRSAKKRIKINRRNNIQNNSYKSLIKYYEKIHLNLIKEYKSSENFVEGQPTPDNIKKTLLDSFALVASRIDRAVKKKIIHKNTAIRKKNNLFRKTFMTS 102          
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A1I9LVY9_9PHAE (30S ribosomal protein S20, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVY9_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.890e-40
Identity = 75/101 (74.26%), Postives = 87/101 (86.14%), Query Frame = 0
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFKM 101
            MANSRSAKKRIKIN+RNNIQN++Y SLIKYYEK HLNL+ EYE SG++  G+S S+ VKK +L S + +VSRIDKAVKKKI HKNTAIRKKNNLF KTFK+
Sbjct:    1 MANSRSAKKRIKINRRNNIQNSSYISLIKYYEKTHLNLLREYEISGEITKGKSTSEMVKKVILLSFSRIVSRIDKAVKKKILHKNTAIRKKNNLFNKTFKI 101          
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A7T1TUU4_9PHAE (30S ribosomal protein S20, chloroplastic n=2 Tax=Lessonia TaxID=105411 RepID=A0A7T1TUU4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.720e-27
Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 0
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLIN-EYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTF 99
            MAN++S+KKRIKINKRN IQNN+YKSLIK YEK HLNLI    E S +L   +S   ++   L  S + VVS IDKAVKKKI HKNTAIRKK NLFKKTF
Sbjct:    1 MANNKSSKKRIKINKRNRIQNNSYKSLIKSYEKKHLNLIKASSEQSSNLEEDKSNYQNL---LRASFSSVVSHIDKAVKKKIIHKNTAIRKKTNLFKKTF 97          
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A0S0GN07_COSCS (30S ribosomal protein S20, chloroplastic n=2 Tax=Costaria costata TaxID=2872 RepID=A0A0S0GN07_COSCS)

HSP 1 Score: 103 bits (257), Expect = 9.900e-27
Identity = 65/100 (65.00%), Postives = 75/100 (75.00%), Query Frame = 0
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLL-GSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTF 99
            MAN++S+KKRIKINKRN IQNN+YKSLIK +EK HLNLI   + S + V      +S  K LL  S + VVS+IDKAVKKKI HKNTAIRKK NL KKTF
Sbjct:    1 MANTKSSKKRIKINKRNRIQNNSYKSLIKSHEKTHLNLI---KASSEQVSNPGEEESNYKALLRASFSAVVSQIDKAVKKKILHKNTAIRKKTNLLKKTF 97          
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A7U3VF30_9PHAE (30S ribosomal protein S20, chloroplastic n=9 Tax=Laminariaceae TaxID=33636 RepID=A0A7U3VF30_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.410e-26
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = 0
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTF 99
            MANS+S+KKRIKINKRN IQNN+YKSLIK +EK HL+LI         V G+  SD     L  S + VVS+IDKAVKKKI HKNTAIRKK NLFKKTF
Sbjct:    1 MANSKSSKKRIKINKRNRIQNNSYKSLIKSHEKNHLSLIKTSSEQASSV-GEEKSDYTAL-LRASFSSVVSQIDKAVKKKIIHKNTAIRKKTNLFKKTF 97          
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A8F0FA16_9PHAE (Ribosomal protein S20 n=1 Tax=Egregia menziesii TaxID=105409 RepID=A0A8F0FA16_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.990e-26
Identity = 65/103 (63.11%), Postives = 73/103 (70.87%), Query Frame = 0
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLIN----EYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTF 99
            MAN++S+KKRIKINKRN IQNN+YKSLIK YEK HL+LI     +  N G+  V           L  S A VVS+IDKAVKKKI HKNTAIRKK NLFKKTF
Sbjct:    1 MANNKSSKKRIKINKRNRIQNNSYKSLIKSYEKKHLSLIKASSEQVSNLGEKEVNSQAL------LKASFASVVSQIDKAVKKKIIHKNTAIRKKTNLFKKTF 97          
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A8F0F7Y8_9PHAE (Ribosomal protein S20 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A8F0F7Y8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.380e-25
Identity = 62/99 (62.63%), Postives = 74/99 (74.75%), Query Frame = 0
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTF 99
            MAN++S+KKRIKINKRN IQNN+YKSLIK +EK HLNL+ +     +  VG+  S+     L  S + VVS+IDKAVKK I HKNTAIRKK NLFKKTF
Sbjct:    1 MANNKSSKKRIKINKRNRIQNNSYKSLIKTHEKNHLNLL-KVSTKQESQVGEEKSNYTAL-LRASFSSVVSQIDKAVKKNIIHKNTAIRKKTNLFKKTF 97          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J786_ECTSI4.200e-5897.0630S ribosomal protein S20, chloroplastic n=2 Tax=E... [more]
A0A6B7EV20_9PHAE2.820e-4783.8430S ribosomal protein S20 n=1 Tax=Cladosiphon okam... [more]
A0A344PF99_9PHAE1.820e-4377.4530S ribosomal protein S20 n=2 Tax=Scytosiphonaceae... [more]
A0A7T8JK05_SCYLO7.420e-4376.4730S ribosomal protein S20, chloroplastic n=2 Tax=S... [more]
A0A1I9LVY9_9PHAE2.890e-4074.2630S ribosomal protein S20, chloroplastic n=1 Tax=P... [more]
A0A7T1TUU4_9PHAE1.720e-2766.0030S ribosomal protein S20, chloroplastic n=2 Tax=L... [more]
A0A0S0GN07_COSCS9.900e-2765.0030S ribosomal protein S20, chloroplastic n=2 Tax=C... [more]
A0A7U3VF30_9PHAE1.410e-2665.6630S ribosomal protein S20, chloroplastic n=9 Tax=L... [more]
A0A8F0FA16_9PHAE1.990e-2663.11Ribosomal protein S20 n=1 Tax=Egregia menziesii Ta... [more]
A0A8F0F7Y8_9PHAE2.380e-2562.63Ribosomal protein S20 n=2 Tax=Laminariaceae TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002583Ribosomal protein S20PFAMPF01649Ribosomal_S20pcoord: 2..97
e-value: 1.1E-23
score: 83.7
IPR002583Ribosomal protein S20TIGRFAMTIGR00029TIGR00029coord: 1..98
e-value: 3.3E-18
score: 64.0
IPR002583Ribosomal protein S20PANTHERPTHR33398FAMILY NOT NAMEDcoord: 1..95
IPR002583Ribosomal protein S20HAMAPMF_00500Ribosomal_S20coord: 1..100
score: 12.917
IPR036510Ribosomal protein S20 superfamilyGENE3D1.20.58.110coord: 1..102
e-value: 4.7E-23
score: 83.3
IPR036510Ribosomal protein S20 superfamilySUPERFAMILY46992Ribosomal protein S20coord: 3..99
NoneNo IPR availablePANTHERPTHR33398:SF3coord: 1..95
NoneNo IPR availablePRODOMPD004231coord: 23..97
e-value: 9.0E-5
score: 103.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76652contigEcto-sp13_S_contig76652:333..641 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76652.18894.1mRNA_Ecto-sp13_S_contig76652.18894.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig76652 333..641 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig76652.18894.1 ID=prot_Ecto-sp13_S_contig76652.18894.1|Name=mRNA_Ecto-sp13_S_contig76652.18894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVV
GQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFK
MS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002583Ribosomal_S20
IPR036510Ribosomal_S20_sf