mRNA_Ecto-sp13_S_contig76652.18894.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76652.18894.1
Unique NamemRNA_Ecto-sp13_S_contig76652.18894.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: D1J786_ECTSI (30S ribosomal protein S20, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J786_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 4.200e-58
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 1 
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFKMS 306
            MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDL+VGQSPSDSVKKKLL SLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFK S
Sbjct:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLIVGQSPSDSVKKKLLASLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFKTS 102
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BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A6B7EV20_9PHAE (30S ribosomal protein S20 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV20_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.820e-47
Identity = 83/99 (83.84%), Postives = 91/99 (91.92%), Query Frame = 1 
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTF 297
            MANSRSAKKRIKINKRNNIQNN+YKSLIKYYEK+HLNLI EY+N+ +++VGQ  SD +KKKLL SLALVVSRIDKAVKKKI HKNTA RKKNNLFKKTF
Sbjct:    1 MANSRSAKKRIKINKRNNIQNNSYKSLIKYYEKIHLNLIKEYKNNNEIIVGQPISDEIKKKLLTSLALVVSRIDKAVKKKIVHKNTATRKKNNLFKKTF 99
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BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A344PF99_9PHAE (30S ribosomal protein S20 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PF99_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.820e-43
Identity = 79/102 (77.45%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFKMS 306
            MAN+RSAKKRI+INKRNNIQNN+YKSLIKYYEK HLNL+ EY+NS + V GQS  D+VKK LL S ALV SR+D+AVKKKI HKNTAIRKKNNLFKKTF  S
Sbjct:    1 MANNRSAKKRIRINKRNNIQNNSYKSLIKYYEKTHLNLLKEYKNSENFVEGQSTPDNVKKTLLDSFALVASRLDRAVKKKIIHKNTAIRKKNNLFKKTFTTS 102
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BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A7T8JK05_SCYLO (30S ribosomal protein S20, chloroplastic n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A7T8JK05_SCYLO)

HSP 1 Score: 144 bits (363), Expect = 7.420e-43
Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFKMS 306
            MANSRSAKKRIKIN+RNNIQNN+YKSLIKYYEK+HLNLI EY++S + V GQ   D++KK LL S ALV SRID+AVKKKI HKNTAIRKKNNLF+KTF  S
Sbjct:    1 MANSRSAKKRIKINRRNNIQNNSYKSLIKYYEKIHLNLIKEYKSSENFVEGQPTPDNIKKTLLDSFALVASRIDRAVKKKIIHKNTAIRKKNNLFRKTFMTS 102
[Close]
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A1I9LVY9_9PHAE (30S ribosomal protein S20, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVY9_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.890e-40
Identity = 75/101 (74.26%), Postives = 87/101 (86.14%), Query Frame = 1 
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFKM 303
            MANSRSAKKRIKIN+RNNIQN++Y SLIKYYEK HLNL+ EYE SG++  G+S S+ VKK +L S + +VSRIDKAVKKKI HKNTAIRKKNNLF KTFK+
Sbjct:    1 MANSRSAKKRIKINRRNNIQNSSYISLIKYYEKTHLNLLREYEISGEITKGKSTSEMVKKVILLSFSRIVSRIDKAVKKKILHKNTAIRKKNNLFNKTFKI 101
[Close]
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A7T1TUU4_9PHAE (30S ribosomal protein S20, chloroplastic n=2 Tax=Lessonia TaxID=105411 RepID=A0A7T1TUU4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.720e-27
Identity = 66/100 (66.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLIN-EYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTF 297
            MAN++S+KKRIKINKRN IQNN+YKSLIK YEK HLNLI    E S +L   +S   ++   L  S + VVS IDKAVKKKI HKNTAIRKK NLFKKTF
Sbjct:    1 MANNKSSKKRIKINKRNRIQNNSYKSLIKSYEKKHLNLIKASSEQSSNLEEDKSNYQNL---LRASFSSVVSHIDKAVKKKIIHKNTAIRKKTNLFKKTF 97
[Close]
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A0S0GN07_COSCS (30S ribosomal protein S20, chloroplastic n=2 Tax=Costaria costata TaxID=2872 RepID=A0A0S0GN07_COSCS)

HSP 1 Score: 103 bits (257), Expect = 9.900e-27
Identity = 65/100 (65.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLL-GSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTF 297
            MAN++S+KKRIKINKRN IQNN+YKSLIK +EK HLNLI   + S + V      +S  K LL  S + VVS+IDKAVKKKI HKNTAIRKK NL KKTF
Sbjct:    1 MANTKSSKKRIKINKRNRIQNNSYKSLIKSHEKTHLNLI---KASSEQVSNPGEEESNYKALLRASFSAVVSQIDKAVKKKILHKNTAIRKKTNLLKKTF 97
[Close]
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A7U3VF30_9PHAE (30S ribosomal protein S20, chloroplastic n=9 Tax=Laminariaceae TaxID=33636 RepID=A0A7U3VF30_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.410e-26
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTF 297
            MANS+S+KKRIKINKRN IQNN+YKSLIK +EK HL+LI         V G+  SD     L  S + VVS+IDKAVKKKI HKNTAIRKK NLFKKTF
Sbjct:    1 MANSKSSKKRIKINKRNRIQNNSYKSLIKSHEKNHLSLIKTSSEQASSV-GEEKSDYTAL-LRASFSSVVSQIDKAVKKKIIHKNTAIRKKTNLFKKTF 97
[Close]
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A8F0FA16_9PHAE (Ribosomal protein S20 n=1 Tax=Egregia menziesii TaxID=105409 RepID=A0A8F0FA16_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.990e-26
Identity = 65/103 (63.11%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLIN----EYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTF 297
            MAN++S+KKRIKINKRN IQNN+YKSLIK YEK HL+LI     +  N G+  V           L  S A VVS+IDKAVKKKI HKNTAIRKK NLFKKTF
Sbjct:    1 MANNKSSKKRIKINKRNRIQNNSYKSLIKSYEKKHLSLIKASSEQVSNLGEKEVNSQAL------LKASFASVVSQIDKAVKKKIIHKNTAIRKKTNLFKKTF 97
[Close]
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Match: A0A8F0F7Y8_9PHAE (Ribosomal protein S20 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A8F0F7Y8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.380e-25
Identity = 62/99 (62.63%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVVGQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTF 297
            MAN++S+KKRIKINKRN IQNN+YKSLIK +EK HLNL+ +     +  VG+  S+     L  S + VVS+IDKAVKK I HKNTAIRKK NLFKKTF
Sbjct:    1 MANNKSSKKRIKINKRNRIQNNSYKSLIKTHEKNHLNLL-KVSTKQESQVGEEKSNYTAL-LRASFSSVVSQIDKAVKKNIIHKNTAIRKKTNLFKKTF 97
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76652.18894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J786_ECTSI4.200e-5897.0630S ribosomal protein S20, chloroplastic n=2 Tax=E... [more]
A0A6B7EV20_9PHAE2.820e-4783.8430S ribosomal protein S20 n=1 Tax=Cladosiphon okam... [more]
A0A344PF99_9PHAE1.820e-4377.4530S ribosomal protein S20 n=2 Tax=Scytosiphonaceae... [more]
A0A7T8JK05_SCYLO7.420e-4376.4730S ribosomal protein S20, chloroplastic n=2 Tax=S... [more]
A0A1I9LVY9_9PHAE2.890e-4074.2630S ribosomal protein S20, chloroplastic n=1 Tax=P... [more]
A0A7T1TUU4_9PHAE1.720e-2766.0030S ribosomal protein S20, chloroplastic n=2 Tax=L... [more]
A0A0S0GN07_COSCS9.900e-2765.0030S ribosomal protein S20, chloroplastic n=2 Tax=C... [more]
A0A7U3VF30_9PHAE1.410e-2665.6630S ribosomal protein S20, chloroplastic n=9 Tax=L... [more]
A0A8F0FA16_9PHAE1.990e-2663.11Ribosomal protein S20 n=1 Tax=Egregia menziesii Ta... [more]
A0A8F0F7Y8_9PHAE2.380e-2562.63Ribosomal protein S20 n=2 Tax=Laminariaceae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76652contigEcto-sp13_S_contig76652:333..641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score183.7
Seed ortholog evalue4.3e-44
Seed eggNOG ortholog2880.D1J786
Model size309
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons1
EggNOG free text desc.Ribosomal protein S20
EggNOG OGs2D134@1,2SGIF@2759
Cds size309
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464036.870969-CDS-Ecto-sp13_S_contig76652:332..6411681464036.870969-CDS-Ecto-sp13_S_contig76652:332..641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76652 333..641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76652.18894.1prot_Ecto-sp13_S_contig76652.18894.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76652 333..641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76652.18894.1

>prot_Ecto-sp13_S_contig76652.18894.1 ID=prot_Ecto-sp13_S_contig76652.18894.1|Name=mRNA_Ecto-sp13_S_contig76652.18894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MANSRSAKKRIKINKRNNIQNNTYKSLIKYYEKVHLNLINEYENSGDLVV
GQSPSDSVKKKLLGSLALVVSRIDKAVKKKIFHKNTAIRKKNNLFKKTFK
MS*
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mRNA from alignment at Ecto-sp13_S_contig76652:333..641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76652.18894.1 ID=mRNA_Ecto-sp13_S_contig76652.18894.1|Name=mRNA_Ecto-sp13_S_contig76652.18894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76652:333..641+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAAATAGTAGATCTGCGAAAAAACGAATTAAAATAAATAAAAGAAA
TAATATACAGAATAACACATATAAATCCTTAATAAAATATTATGAAAAAG
TACATTTAAATCTTATCAACGAATATGAAAATAGTGGTGATCTTGTAGTA
GGTCAATCGCCTTCGGATAGTGTTAAAAAGAAACTTTTAGGTTCATTAGC
TTTAGTTGTGAGTCGAATTGATAAAGCTGTAAAAAAAAAAATTTTTCATA
AAAACACGGCGATTCGAAAAAAAAATAATTTATTCAAAAAAACTTTTAAA
ATGTCATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76652:333..641+

>mRNA_Ecto-sp13_S_contig76652.18894.1 ID=mRNA_Ecto-sp13_S_contig76652.18894.1|Name=mRNA_Ecto-sp13_S_contig76652.18894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76652:333..641+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAAATAGTAGATCTGCGAAAAAACGAATTAAAATAAATAAAAGAAA
TAATATACAGAATAACACATATAAATCCTTAATAAAATATTATGAAAAAG
TACATTTAAATCTTATCAACGAATATGAAAATAGTGGTGATCTTGTAGTA
GGTCAATCGCCTTCGGATAGTGTTAAAAAGAAACTTTTAGGTTCATTAGC
TTTAGTTGTGAGTCGAATTGATAAAGCTGTAAAAAAAAAAATTTTTCATA
AAAACACGGCGATTCGAAAAAAAAATAATTTATTCAAAAAAACTTTTAAA
ATGTCATAA
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