mRNA_Ecto-sp13_S_contig7664.18892.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig7664.18892.1
Unique Name	mRNA_Ecto-sp13_S_contig7664.18892.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig7664.18892.1 vs. uniprot
Match: D7G3S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S2_ECTSI)

HSP 1 Score: 763 bits (1971), Expect = 7.060e-267
Identity = 368/396 (92.93%), Postives = 377/396 (95.20%), Query Frame = 1

Query:  487 MHAIRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKTAKEFLGGTLSQKAFNEAKERRLAALEDGDVSALAGKRNERSDNLQEKYPMACGRVEQSVSERTQPSANLTKTNHDYRQRGDHIRSDADNSLVCVHPDKCETHGVHYMTGIQRHLYHECMDDLQAAFSAGRAEIACISRSSSDKMVPFYVVEQSIRSCLCVHCYKANLITVALYQLWPTLHHGDNSGSGCTCNCGFCSDGACRTFLPFATEKSVHGMGDLSDLLLCEKVFIYRGQDGKDVKAHRSACVSGHCPTCQRKQAAFFGCPRHQGTTDRRFPASTATLGVCPSAMEGQPGRVKWSMFTSVDAEGRATDARRLAGPQTPDDDDGDWKPRAASDTSRPKKAVATKTGTVDDF 1674
            MHAIRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYK A EFLGGTLS+K+FNEAKERRL ALEDGDVSALAGKR  RSDNLQEKYPMAC RVEQS+ ERTQPS NLTKTNHDYRQRGDHIRSDADNSLVCVHP+KCETH VHYMTG Q+HLYH+CMDDLQ AFSAGRAEIA ISRSS DKMVPFYVVEQSIRSCLCVHCYKA LITVALYQLWPTLHHGDNSGSGCTCNCGFCSDGACRTFLPFATEKSVHGMGDLSDLLLCEKVFIYRGQ+GKDVKAHRS CVSGHCPTCQRKQAAFFGCPRHQGTTDRRFP+S ATLG CPSAMEGQPGRVKWSMFTSVDAEGRATDARRLAGPQ PDDDDGDW+PR ASDTSRPKKAVATKTGTVDDF
Sbjct:    1 MHAIRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKHANEFLGGTLSRKSFNEAKERRLTALEDGDVSALAGKRKMRSDNLQEKYPMACCRVEQSILERTQPSPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETHRVHYMTGTQQHLYHQCMDDLQVAFSAGRAEIASISRSSFDKMVPFYVVEQSIRSCLCVHCYKAKLITVALYQLWPTLHHGDNSGSGCTCNCGFCSDGACRTFLPFATEKSVHGMGDLSDLLLCEKVFIYRGQNGKDVKAHRSVCVSGHCPTCQRKQAAFFGCPRHQGTTDRRFPSSAATLGACPSAMEGQPGRVKWSMFTSVDAEGRATDARRLAGPQPPDDDDGDWEPRVASDTSRPKKAVATKTGTVDDF 396

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BLAST of mRNA_Ecto-sp13_S_contig7664.18892.1 vs. uniprot
Match: A0A6H5K4U5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U5_9PHAE)

HSP 1 Score: 472 bits (1214), Expect = 8.010e-145
Identity = 265/460 (57.61%), Postives = 297/460 (64.57%), Query Frame = 1

Query:  268 YTVFRKCQDVQKCRFKARLNKTVDTAVEIACQTAAKEFGRPVDDFTTLARQSLVSHNGGRTIGEGDPVSP---DKPMHAIRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKTAKEFLGGTLSQKAFNEAKERRLAALEDGDVSALAGKRNERSDNLQEKYPMACGRVEQSVSERTQPSANLTKTNHDYRQRGDHIRSDADNSLVCVHPDKCETHGVHYMTGIQRHLYHECMDDLQAAFSAGRAEIACISRSSSDKMVPFYVVEQSIRSCLCVHCYKANLITVALYQLWPTLHHGDNSGSGCTCNCGFCSDGACRTFLPFATEKSVHGMGDLSDLLLCEKVFIYRGQDGKDVKAHRSACVSGHCPTCQRKQAAFFGCPRHQGTTDRRFPASTATLGVCPSAMEGQPGRVKWSMFTSVDAEGRATDARRLAGPQTPDDDDGDWKPRAASDTSRPKK 1638
            ++V RK +  QK RFK  +NK VD  + I C+ AA+  G+PV+DF TLA +S+VSH GGR I +    S    DKP+ AIRE W+ INQPHVVA   GYNARRTILGAIA   VKY TA EF+GG+LS+  FNEAK RR  AL  GD+S L+GKR ERSDNLQEKYPMAC RVEQS++ERTQPS NLTKTNHDYR+RGDHIRSDADNSLVCVH +K     V    G                F AG AE+  ISR S DKMVPFYVVEQS+RSCLCVH Y+A LITVAL QLW TLHHGD S SGCTC CGFCSDGACRTFLPFAT KSVHGMGDLSDLLLCEK        GK    H S  +     +                 +DRRFPAS+A LG   S  EGQ G+                           DDDDGDW PR ASD+SRPKK
Sbjct:   29 FSVARKFEPTQKFRFKNNVNKRVDKVLRIECKKAARACGKPVNDFITLASKSVVSHFGGRLIEQHPSPSSTDNDKPVEAIREIWSNINQPHVVATLPGYNARRTILGAIASIDVKYSTACEFVGGSLSRATFNEAKARRETALAAGDMSKLSGKRKERSDNLQEKYPMACSRVEQSIAERTQPSPNLTKTNHDYRRRGDHIRSDADNSLVCVHREK----EVRNSPG----------------FEAGAAEVGSISRRSFDKMVPFYVVEQSLRSCLCVHYYRAKLITVALCQLWSTLHHGDTSDSGCTCTCGFCSDGACRTFLPFATAKSVHGMGDLSDLLLCEKGIARHASAGK---RHSSVVLVITAVS-----------------SDRRFPASSAALGAIASTSEGQAGKPT-------------------------DDDDGDWAPRVASDSSRPKK 423

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BLAST of mRNA_Ecto-sp13_S_contig7664.18892.1 vs. uniprot
Match: D7FWS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS2_ECTSI)

HSP 1 Score: 417 bits (1071), Expect = 9.270e-131
Identity = 225/531 (42.37%), Postives = 316/531 (59.51%), Query Frame = 1

Query:  151 SLRDIAGGLSS----------TTPARSSSGENTRRHTQGSVDLNALPSPYTVF------RKCQDVQKCRFKARLNKTVDTAVEIACQTAAKEFGRPVDDFTTLARQSLVSHNGGRTIGEGDPVSPDKPMHAI----RETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKTAKEFLGGTLSQKAFNEAKERRLAALEDGDVSALAGKRNERSDNLQEKYPMACGRVEQSVSERTQPSANLTKTNHDYRQRGDHIRSDADNSLVCVHPDKCETHGVHYMTGIQRHLYHECMDDLQAAFSAGRAEIACISRSSSDKMVPFYVVEQSIRSCLCVHCYKANLITVALYQLWPTLHHGDNSGSGCTCNCGFCSD-GACRTFLPFATEKSVHGMGDLSDLLLCEKVFIYRGQ-DGKDVKAHRSACVSGHCPTCQRKQAAFFGCPRHQGTTDRRF-PASTATLGVCPSAMEGQPGRVKWSMFTSVDAEGRATDARRLAGPQTPDDDDGDWKPRAASDTSRPKKAVATKTGTVDDF 1674
            S+RD+A G  S           TP+ ++ G  +     G +D+N  P P          +  +  +KCRF   + + +D++     ++ A  FG   +     A + +++H   R +   +  +     HA+    R+ W+ ++   VVA+  GY+ RRT++G I   +V ++ AK FLGGTL +K + +A+ERR  AL++ D   +AGKR +RSDNL++ YP A  RV +S+ ERTQPS   TKT HD R +G+HIRSDADNSLVCV P+ C+THG+ YM G Q  LY+ CM+DLQAAF  G  E+  IS+ S + ++PFYVVEQS RSCLCVHCYKA L TV+L ++WPTLHHG+ +G+ C+C C  CS  G C+ FLP+++ K V  MG LSD L+C+K+F+Y    +GK + AH S CVSG+CP C+ +Q  FFGCPR++G  DR   PAST++  + P+      G V+WSMF +VD  GRA    R  G      D              PKK V  K GTVD+F
Sbjct:    3 SVRDVAAGRLSGEHRTQATLFATPSPANVGATSPPTPLGRLDINTPPQPADPQQAAKRRKNTESTRKCRFVKAIKENIDSSA----RSHADTFGMSFEQAQKDAYKGVMTHEICRQVVHDECKAKKNEHHAVVQAVRDVWSIVSGSSVVASAGGYSLRRTMVGIIGSPRVSFEAAKSFLGGTLKEKTYKKARERREEALKNNDFGKMAGKRKQRSDNLEDLYPFAMARVRESIEERTQPSPCETKTKHD-RAKGNHIRSDADNSLVCVRPELCQTHGISYMMGTQLQLYNSCMEDLQAAFEQGHVEVGSISKKSFEDIIPFYVVEQSPRSCLCVHCYKAKLATVSLVKMWPTLHHGETTGAACSCTCDLCSSAGGCKEFLPYSSPKEVSSMGKLSDKLMCDKIFLYTATGNGKAISAHSSVCVSGNCPRCKERQDRFFGCPRNRGGIDRDLGPASTSSSTIHPAGRTSG-GTVEWSMFDTVDEAGRAVGPSRRRGANA-GGDXXXXXXXXXXXXXXPKKGVVVKRGTVDEF 526

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BLAST of mRNA_Ecto-sp13_S_contig7664.18892.1 vs. uniprot
Match: D7FXZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ3_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 1.000e-102
Identity = 204/507 (40.24%), Postives = 274/507 (54.04%), Query Frame = 1

Query:  217 TRRHTQGSVDLNALPSPYTVFRKCQDVQKCRFKARLNKTVDTAV---EIACQTAAKEFGR-----PVDDFTT---LARQSLVSHNGGRTIGEGDPVSPDKPMHAIRET----WAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKTAKEFLGGTLSQKAFNEAKERRLAALEDGDVSALAGKRNERSDNLQEKYPMACGRVEQSVSERTQPSANLTKTNHDYRQRGDHIRSDADNSLVCVHPDKCETHGVHYMTGIQRHLYHECMDDLQAAFSAGRAEIACISRSSSDKMVPFYVVEQSIRSCLCVHCYKANLITVALYQLWPTLHHGDNSGSGCTCNCGFCSDGACRTFLPFATEKSVHGMGDLSDLLLCEKVFIYRGQDGKDVKAHRSACVSGHCPTCQRKQAAFFGCPRHQGTTDRRF--PASTATLGVCPSAMEGQPGRVKWSMFTSVDAEGRATDA----RRLAGPQTPDDDDGDWKPRAASDTSRPKKAVATKTGTVDDF 1674
            T RH+  +  L   P         QD  + R K  L+  V   V   + AC    +   +      V+D T    LA + L +      +        ++   AIR+     W +++    VA+  G+  RR +LGA+ G    YK   EF+GG+LS +AFNEA+ RR A      +  L   R  RSD L+   P A   + + +   TQPS  L KT HDY   G+H RS+ADNSLVCV+P +C+T  V Y+ G +  LY   M DL  AF+A + E+  ISR S DK++PFYVVEQS+RSC+CVHCYKA L+T  L  LWPTLH G   GS C C C  C DG C  +LP+ + K+VH M D SD+L+C K  +Y  +DG    AH++ CVSGHC  C++KQ  FF CP+++G  DR+    A  A +G  P      PG V+W  FT+VD  G+AT A    RR        +DD D+ P   S   R ++AVA KTGTVD+F
Sbjct:   49 TPRHSSAAKKLRLTP---------QDASRSRMKKVLDHNVSVFVNSLQDACAAWTERLNKNFEPVAVEDATVDALLANKDLTAFM--EDLASSSRKHKERGNEAIRDNIRALWKRLSSSETVASSEGWQFRRVLLGALCGPNTTYKEVHEFVGGSLSHRAFNEAQIRRDATDTTSILHDLISDRKLRSDRLEVSCPKALAWIVERIIFHTQPSPCLVKTEHDY-DTGNHRRSEADNSLVCVYPARCKTESVRYLMGTKLQLYQTVMKDLDQAFAAEKVEVPSISRPSFDKIIPFYVVEQSLRSCICVHCYKAKLVTKGLCDLWPTLHQGSTPGSKCDCECELCKDGGCAEYLPYGSSKAVHSMADFSDMLMCPKEQLYCSEDGTLEDAHKAVCVSGHCLLCKQKQERFFDCPKNKGNADRQLNPAAGPAQVGAPP------PGEVRWKNFTTVDDNGQATSAPLQRRRAPNSTAGGEDDEDFDPLGGS-KRRTRRAVAEKTGTVDEF 536

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BLAST of mRNA_Ecto-sp13_S_contig7664.18892.1 vs. uniprot
Match: A0A6H5JLV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLV8_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 3.570e-77
Identity = 138/201 (68.66%), Postives = 155/201 (77.11%), Query Frame = 1

Query:  400 FTTLARQSLVSHNGGRTIGEGDPVSP-----DKPMHAIRETWAKINQPHVVAAEAGYNARRTILGAIAGEKVKYKTAKEFLGGTLSQKAFNEAKERRLAALEDGDVSALAGKRNERSDNLQEKYPMACGRVEQSVSERTQPSANLTKTNHDYRQRGDHIRSDADNSLVCVHPDKCETHGVHYMTGIQRHLYHECMDDLQAA 987
            F TLA +S+VSH GGR I E DP SP     DKP+ AI E WA +NQPHVVA   GY ARR ILGAIA   VKY TA EF+GG+LS+ AFNEAK  R  AL DGD+S L+G   ERSDNLQ+K PMACGR EQS +E TQP  NLTKTNHDYRQRGDHIRSDADNSLVCVHP+KCETH V+Y+TG + HL+ +CMDDLQAA
Sbjct:   17 FRTLASKSVVSHFGGRLI-EQDP-SPASTRNDKPVEAITEIWANVNQPHVVATLPGYKARRAILGAIASNHVKYSTACEFVGGSLSRAAFNEAKAPRETALADGDMSKLSGTSKERSDNLQKKSPMACGR-EQSFAEHTQPFPNLTKTNHDYRQRGDHIRSDADNSLVCVHPEKCETHPVYYITGTRDHLFRQCMDDLQAA 214

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BLAST of mRNA_Ecto-sp13_S_contig7664.18892.1 vs. uniprot
Match: A0A6H5JXK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK3_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.170e-56
Identity = 107/199 (53.77%), Postives = 121/199 (60.80%), Query Frame = 2

Query: 1772 FVIDFQEQLQLIE*DEVQAQHWLHKSVTIFPCPIYLKWKGRVWS*SFQVLSDDRTQDNAWVQHVMFKILTEHVPALVRKLGAPAMVLAIFFTDDCAKQFNCRFHFGWLASRAVMVRDTNGESTNAPVHIEHHYFGSCHGK-----------------------------SSSDSEGANTKGVTRQNIINQSWVVQSPGH 2281
            F +  QE+LQL+E DEVQ QHW H++VTIFPCPIY KWKGRVW+ SFQVLSD R                      V    AP M+ AIFFTD+CAKQF CRFHFGWLAS  V++RD NG STN PVH+EHH+FGSCHGK                             S SD +GANTKG T QNIINQ+WVVQ P H
Sbjct:   29 FRLRLQEKLQLMEQDEVQLQHWQHENVTIFPCPIYFKWKGRVWAYSFQVLSDYRKSGQR-----------------VGAACAPTMMRAIFFTDNCAKQFKCRFHFGWLASHEVIIRDNNGGSTNVPVHVEHHHFGSCHGKRDDXFAITTAGLPTYQCMWSITTLGAATGSGSDIKGANTKGTTTQNIINQTWVVQGPRH 210

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BLAST of mRNA_Ecto-sp13_S_contig7664.18892.1 vs. uniprot
Match: A0A6H5JW27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW27_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.680e-56
Identity = 101/168 (60.12%), Postives = 111/168 (66.07%), Query Frame = 1

Query: 1144 TLHHGDNSGSGCTCNCGFCSDGACRTFLPFATEKSVHGMGDLSDLLLCEKVFIYRGQDGKDVKAHRSACVSGHCPTCQRKQAAFFGCPRHQGTTDRRFPASTATLGVCPSAMEGQPGRVKWSMFTSVDAEGRATDARRLAGPQTPDDDDGDWKPRAASDTSRPKKAVA 1647
            TLHHGD S  GCTC CGFCS+GACRTFLPFAT KSVHGMG LSDLLL EKVF+YRG++  DVKAHRS CVSGHC T QR+QAAFFGCPRH  +TDRR  AS+A LG   S  EGQ G+                           DDDDGDW  + ASD+ R KK  A
Sbjct:   13 TLHHGDTSDLGCTCTCGFCSNGACRTFLPFATAKSVHGMGVLSDLLLSEKVFLYRGEEANDVKAHRSTCVSGHCLTGQRRQAAFFGCPRHHVSTDRRVLASSAALGAMASTSEGQAGKPA-------------------------DDDDGDWATKVASDSPRTKKVNA 155

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BLAST of mRNA_Ecto-sp13_S_contig7664.18892.1 vs. uniprot
Match: A0A6H5L1G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G9_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 3.030e-54
Identity = 99/152 (65.13%), Postives = 111/152 (73.03%), Query Frame = 2

Query: 1739 TLRTLEEGTVVFVIDFQEQLQLIE*DEVQAQHWLHKSVTIFPCPIYLKWKGRVWS*SFQVLSDDRTQDNAWVQHVMFKILTEHVPALVRKLGAPAMVLAIFFTDDCAKQFNCRFHFGWLASRAVMVRDTNGESTNAPVHIEHHYFGSCHGKS 2194
            T  TLEEGTVV+V DFQEQ QL+E DEVQ+QHW H SVTIF CPIYLKWK R+W+ S+QVLSDDRTQDNAW            +P              +FFTD+CAKQF CRFHFGWLAS  VM+RD +GESTN PVH+EHHYFGSCHGKS
Sbjct:   14 TSLTLEEGTVVYVFDFQEQRQLMEQDEVQSQHWQHDSVTIFRCPIYLKWKARMWAYSYQVLSDDRTQDNAWA-----------LPPWCE----------LFFTDNCAKQFKCRFHFGWLASYEVMIRDNHGESTNVPVHVEHHYFGSCHGKS 144

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BLAST of mRNA_Ecto-sp13_S_contig7664.18892.1 vs. uniprot
Match: A0A6H5KFD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD4_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.610e-50
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 2

Query: 1871 IYLKWKGRVWS*SFQVLSDDRTQDNAWVQHVMFKILTEHVPALVRKLGAPAMVLAIFFTDDCAKQFNCRFHFGWLASRAVMVRDTNGESTNAPVHIEHHYFGSCHGKS 2194
            IY KWKGRVW+ SFQVLSDDRTQDNAW Q VMFK++TEHVP L+RKLGAPAMV AIFFTD+CAK+F CR HFGWLAS  V++RD NGESTN PVH EHHYFGSCHGKS
Sbjct:  120 IYFKWKGRVWANSFQVLSDDRTQDNAWAQDVMFKLMTEHVPVLMRKLGAPAMVRAIFFTDNCAKRFKCRLHFGWLASHEVIIRDINGESTNVPVHAEHHYFGSCHGKS 227

[Close]

BLAST of mRNA_Ecto-sp13_S_contig7664.18892.1 vs. uniprot
Match: A0A6H5JLY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.240e-9
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1

Query: 1042 MVPFYVVEQSIRSCLCVHCYKANLITVALYQLWPTL 1149
            MVPFYVVE S+RSCLCVHCY+A LITVA  QLW TL
Sbjct:    1 MVPFYVVEHSLRSCLCVHCYRAKLITVAPCQLWSTL 36

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig7664.18892.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig7664.18892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20


Match Name	E-value	Identity	Description
D7G3S2_ECTSI	7.060e-267	92.93	Uncharacterized protein n=2 Tax=Ectocarpus silicul...	[more]
A0A6H5K4U5_9PHAE	8.010e-145	57.61	Integrase catalytic domain-containing protein n=1 ...	[more]
D7FWS2_ECTSI	9.270e-131	42.37	Uncharacterized protein n=2 Tax=Ectocarpus silicul...	[more]
D7FXZ3_ECTSI	1.000e-102	40.24	Uncharacterized protein n=2 Tax=Ectocarpus silicul...	[more]
A0A6H5JLV8_9PHAE	3.570e-77	68.66	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXK3_9PHAE	1.170e-56	53.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JW27_9PHAE	1.680e-56	60.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L1G9_9PHAE	3.030e-54	65.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KFD4_9PHAE	1.610e-50	80.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLY1_9PHAE	1.240e-9	80.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig7664	contig	Ecto-sp13_S_contig7664:1323..7351 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	2281
Hectar predicted targeting category	signal peptide
Exons	5
Cds size	1932

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig7664.18892.1	prot_Ecto-sp13_S_contig7664.18892.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig7664 1323..7002 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464036.7365694-CDS-Ecto-sp13_S_contig7664:1322..1594	1681464036.7365694-CDS-Ecto-sp13_S_contig7664:1322..1594	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7664 1323..1594 +
1681464036.750204-CDS-Ecto-sp13_S_contig7664:3937..4375	1681464036.750204-CDS-Ecto-sp13_S_contig7664:3937..4375	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7664 3938..4375 +
1681464036.7619371-CDS-Ecto-sp13_S_contig7664:4679..4956	1681464036.7619371-CDS-Ecto-sp13_S_contig7664:4679..4956	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7664 4680..4956 +
1681464036.7735567-CDS-Ecto-sp13_S_contig7664:5217..5868	1681464036.7735567-CDS-Ecto-sp13_S_contig7664:5217..5868	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7664 5218..5868 +
1681464036.7846413-CDS-Ecto-sp13_S_contig7664:6708..7002	1681464036.7846413-CDS-Ecto-sp13_S_contig7664:6708..7002	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig7664 6709..7002 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464036.795933-UTR-Ecto-sp13_S_contig7664:7002..7351	1681464036.795933-UTR-Ecto-sp13_S_contig7664:7002..7351	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig7664 7003..7351 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig7664:1323..7351+
coding sequence from alignment at Ecto-sp13_S_contig7664:1323..7351+

protein sequence of mRNA_Ecto-sp13_S_contig7664.18892.1

>prot_Ecto-sp13_S_contig7664.18892.1 ID=prot_Ecto-sp13_S_contig7664.18892.1|Name=mRNA_Ecto-sp13_S_contig7664.18892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=644bp
MCSPGIRFVARHLVLTTLTLLRIVAGSVGMSLPPPQDLDAASPDTASINS
SLRDIAGGLSSTTPARSSSGENTRRHTQGSVDLNALPSPYTVFRKCQDVQ
KCRFKARLNKTVDTAVEIACQTAAKEFGRPVDDFTTLARQSLVSHNGGRT
IGEGDPVSPDKPMHAIRETWAKINQPHVVAAEAGYNARRTILGAIAGEKV
KYKTAKEFLGGTLSQKAFNEAKERRLAALEDGDVSALAGKRNERSDNLQE
KYPMACGRVEQSVSERTQPSANLTKTNHDYRQRGDHIRSDADNSLVCVHP
DKCETHGVHYMTGIQRHLYHECMDDLQAAFSAGRAEIACISRSSSDKMVP
FYVVEQSIRSCLCVHCYKANLITVALYQLWPTLHHGDNSGSGCTCNCGFC
SDGACRTFLPFATEKSVHGMGDLSDLLLCEKVFIYRGQDGKDVKAHRSAC
VSGHCPTCQRKQAAFFGCPRHQGTTDRRFPASTATLGVCPSAMEGQPGRV
KWSMFTSVDAEGRATDARRLAGPQTPDDDDGDWKPRAASDTSRPKKAVAT
KTGTVDDFNVPAIHSSPEAVSHPTERVQRNPTYPGGRYGGFRHRLPGAAS
AHRVGRSTSPALATQKCNDIPLSHLPQVEGPCVVLIFPSSQRR*

mRNA from alignment at Ecto-sp13_S_contig7664:1323..7351+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig7664.18892.1 ID=mRNA_Ecto-sp13_S_contig7664.18892.1|Name=mRNA_Ecto-sp13_S_contig7664.18892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7664:1323..7351+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCTCTCCAGGCATACGGTTCGTGGCCCGCCACCTGGTCCTTACCAC
CCTCACCCTGTTGAGGATCGTGGCTGGGAGCGTTGGGATGAGCTTACCAC
CGCCCCAAGATTTGGATGCCGCATCTCCAGACACTGCTTCGATCAACTCA
TCACTGCGTGATATTGCAGGTGGCCTGTCGTCGACAACCCCAGCACGCTC
CTCGTCGGGGGAGAACACTCGGCGCCACACACAAGGCTCAGTCGACCTCA
ACGCTCTACCTTCTCCATACACGTAAGCTATCGTGCAGCAGTGCTGGGTG
TGTCCATTTCACTAAATAACGATTTATTGCCATACAAGCGTCTTCCTGGA
CAATACTGAAGTCTACAGGCAGACGTTCGCCTGTGACTTGCTTACTTGGT
TTCGACGCTTTCTACACGGACGACCCTAGCCTTTGTCGCGCATATGTTTC
ATGATTGCAGCACATCGACCGTAATGCCTAGGCTACAGTATGGGCTAACG
TCACTCAACACGAAGGAGTAGTCTATACTGTAGTCGCATGTGTCACGCTT
CGTCAGTCATAGACTACAATACTGCGAAAGCGGCAAGCCTCGTGTGGTCC
ACGTTGATTTTTGCCGCACCATTGCCAACAGAGTAAGTCCGATTTGGAAT
AATTGCAGGGACTGCTCGTGTGCAGACGCGTGGTACACGGCGAGCGTGTC
GTTGTGAGGACAGCCACGTGATGGACAGGGGGGCAGCCGCAAACACACGG
CTCTCGATCAACCTTTGCAATCCAACACGCCCGAATAGTCCCGAAGTCTA
TTTTTTTTATACGCGTGCGTGGTATCTTCATTCCGAGGCTACTCACAACG
TGCTTACAGCAGCAAAATGGACATGGGACACATCCGCTCTACTTGCAGCT
GGCCATGACGCTACCGGAGGTTATTCAGATGGTGAACGGCATGCACAGAC
AAACGTGTGAGGTAGTGAATCCGATCAGTCCAGCCAGCGGCCGAGGACAT
GGGGGTTTCAGTTATATGTCGGTTGAAGAAAGACCCCCGAATAACTGTGT
TTGTGTTGAATCTTCGTCGGCGAACTGCAGTACACCAACAACACGCAATC
GCCGCGCAAAGGATTAGGGAAGGCATGTCAGACACAGTTGTAATCATATC
GTTGCTCCTCGGCCGAGGGGGTCCTAGAGGGTGTAAACAACGTAAATACA
CCCTCCAGAACTCGCTGTGGCAAACCCGGCCATAGGCCGTGTGCGGGTTA
CGAATCTCTCCCGACCTGGATAAATCCGAATCCAATCAGTCGAACCTAGT
CGGCCGAGGACATGGGGTTCCAAATATATGTCTGTTGAAGAAAGACCCCC
GAACAACTGTATTTGTGTTGAAATTTTGTCGGCGAACTGCAGTACACCAA
CAACACGCAATCGCCGCGCCAAGAATTATCTAGTCTAAATATGTCAGGCA
AAGTTGTCATCACATCGTCGCTCCTCGACCGAGGAAGTCATAGAGGTTGT
AAACAACGACAGACAACAGACCCTGCGGAACTCGCTGTGGCAAACCCGGC
CGTCAGGCGATCTTCGCGATGGGGTGTGTGTCCCGATACAGTTTAGATAC
ATATCTCGAGCAACATACACTTCGGGCCCTCCCTGTGTCACACCTCACCG
CCGCTATGCTATCGACCATAGAGCTATGGCGTCTGAGTGTGTTTCGACAT
ATTGTACGATCCGTTGCATAACCTTGATGATTCTTTGTGGCCTATATCGC
ATCTCGGTGGATTTGTGATTTCCTTCCTCAGGGTTGCCGAGTTTGTGTTT
CATTGGTGGCCTTGATTAAACAGGATACGTTGGAGACGAGTAACTAGCAT
CGAGCTTGATCAATGAGGCATTTTCTCGAAGGGCACTCACCCGAGGGGGG
GTGTATACGGGCTCCGGGGTTACGTTTGTTTGTGAAATATTTCAAAACAT
ACTACAAGTTTCCCAGTTGGCGCCGCCACGTGTTGAGACGCTTGATACTA
CCGGTTACAACCGGTCTCGGTCAATCGGCCGAGGACATCGTTTTCCTGAT
ATATATTTGGCTCGTAAATGGACACGTACGACGACTGTTTCCAAATTTCT
GGCGCATATCTGCAGTACACAAAAAAACGTACTTCGTCACGCCCTGAAAA
AGGAATTTGTCACGCGACAGGTTCCGACATACCGATAGGTAGCGCTCCTC
GGCCGAGTTATTCCTAGCAACAGAGACAAATATTTAATCGGGGGCACTCT
CTGTCGTATAACGGGCCATCGCAAAAGTCCATCGTCTCTGTGGGGTGCGT
GTGCTCAGATGTAGGGCGATTCTCGGACGAACGCGTATCTCGCAACCGAA
CCCCGAATACCCCTGGGCTGTCTTTGTCGCAGGCCGGACCATCGCACTCG
TTCAAGGCATGTTGTACATGTGTTGATTTTCGGAGCCCGCACAATCCTAT
AAAACCCGACGACCTTGGTGTTCGTGCATCTCGAAGAACCTTCCCCTGAG
TGTGGCACTTGCCACCTGTATGAGTGAGATTGTCCGTGCATATTTGCCGT
TGAAAATGCGCTTAACAAACCTCCCTTTCACACCCGACGCTGCACCACGA
CATCGGTGCTTTCAGTGTGTTCAGGAAGTGTCAGGATGTACAAAAATGCA
GGTTCAAAGCCAGGTTGAACAAAACCGTGGATACTGCGGTGGAGATAGCG
TGTCAAACTGCGGCCAAGGAGTTCGGAAGGCCTGTCGACGACTTCACAAC
ATTGGCTCGCCAGAGTCTCGTGTCTCACAACGGTGGTCGAACAATAGGCG
AAGGAGACCCGGTATCTCCGGACAAGCCCATGCACGCCATCAGGGAAACC
TGGGCGAAAATTAATCAGCCCCACGTCGTAGCGGCCGAGGCCGGGTATAA
TGCGCGACGGACCATCCTCGGTGCGATCGCCGGCGAGAAGGTGAAGTACA
AGACCGCCAAGGAATTCCTAGGAGGCACTCTGAGCCAGAAAGCCTTCAAC
GAGGCAAAGGAACGGAGATTGGCGGCTCTCGAAGACGGCGACGTGTCGGC
ATTGTAAGTACGTCAAGTACGTCAAGAACGTCAAGCTCGTGTGACAGCCA
GGGTACTGTTTTTTGTCGTCAGTCCGTGGCGGTGGATCTGCCGCAGCCGA
CAGGGAATCGAGCAGGACACATCGGTTGTGCGTCCTCGTCGTGCCTCTAC
CGTCTGTCGACGCTAGTTTATGAAATAGCATGACAGCAACCCAAGGTAGC
TGGTCGGCCGAGGACCTGAATTCGCTGCAAAACACTCACTTGTTCGGCTG
GGGGTAACAATTGCGAACCATTCACGCATGCCACGTTTCTATACCTTATC
CATGCAGGGCAGGGAAGAGAAACGAGAGGTCCGATAACTTGCAGGAGAAG
TACCCAATGGCATGCGGTCGGGTGGAGCAGAGTGTTTCCGAGCGCACCCA
GCCTTCTGCAAACCTTACGAAGACGAATCACGACTACCGGCAGCGTGGGG
ATCACATTCGGTCTGACGCGGACAACTCTTTGGTCTGCGTCCACCCGGAT
AAGTGTGAAACTCACGGAGTACACTACATGACTGGGATCCAGCGGCACCT
GTATCACGAATGCATGGATGACCTACAAGCGGCTGTGAGTGCCATACTCG
CTATGCACGTACAACAAAGTAGTTGTCGGTGTAATCGGTTGGTATGTGCC
ATTTGGTACATACGATACCAGTATATAATGAAGAGAACTTCAGGAGTCTT
CATTGGCGTCACCTCTCAGTCTGCACGTATCCGGCTACATGAGGCCTTCA
CCAGGCAATACACTACGAGAGTCGACAACAGCCCAGAAGTAACTGACGCC
CCACCGTGTCCGTCCTGCATACGTTCGGCGCCGCGCGTATCGCAGTTTAG
TGCCGGGAGAGCTGAAATCGCCTGTATTTCCCGAAGTTCTTCCGACAAGA
TGGTCCCCTTCTACGTGGTGGAGCAATCAATACGATCCTGCCTCTGCGTC
CATTGCTACAAGGCAAATCTTATCACTGTTGCCCTGTATCAACTGTGGCC
AACCCTTCACCATGGCGATAACTCGGGTTCAGGCTGCACGTGCAACTGCG
GGTTTTGCTCGGATGGAGCATGTCGGACCTTCCTGCCGTTCGCCACGGAG
AAGTCGGTGCACGGCATGGGGGACCTCAGCGACCTGCTCCTGTGCGAAAA
GGTCTTCATCTACAGAGGTCAAGATGGCAAAGACGTCAAGGCACATCGGT
CGGCCTGTGTTTCAGGACATTGCCCAACATGCCAGCGCAAGCAAGCGGCA
TTCTTCGGTTGTCCCCGTCATCAGGGCACTACCGATCGACGTTTCCCTGC
TTCTACCGCCACCTTGGGCGTGTGCCCTAGCGCCATGGAAGGCCAGCCAG
GAAGGGTGAAGTGGTCCATGTTCACCTCTGTGGATGCTGAAGGACGCGCA
ACGGACGCCCGCCGCCTCGCTGGACCGCAGACACCCGACGACGATGATGG
CGACTGGAAACCAAGAGCGGCGTCGGATACATCTAGGCCGAAAAAGGTGA
ATACGAGGTTACCGAAACGATCGCAGTGATGTGCTGGGGTCGGTCAATGT
TTGCGTATTTTAGAGCCCGCTGGTCTCGAAAATTATGACCGGCTATTCCC
ACTCGTTTACTTTCCTCAGTTTCCTGACTTTCGGCAAGAGGGTGTGGCAA
GTACAGAGCTACGGCCGCGGGTGTAGGCTCCTCGACCTATCAGCGGCCAC
CACGTGAAACATGTGAAAATGAGATGCTACCCATGCCTTAAAGCTGTCTC
CTAAGAACTCGACACGTAATGATCTACATAGCTTTGGTCACGTAGGCCCT
CGCTCACGACAAAGATTGCCACCGGCGCGCTACACCTCGTTGTTGTGACT
TTCCTAAGATCGACAAGCAGTACGGCGTGGTAGTTGCGGAATTAGCTGGC
ATCAGGTCATCGATCGATTTGTGAAGGGATTACTCTGTAATGGACGTAGC
GTTGTACGCAGTACTGTTTCTCAGCGTTCGGGTGTTTGATAGTATACGCA
CATCATAACATCCCTTAATCGTGGTTTAGTGCCTCTCGGCTCTGTAGATT
GCATTGCTTATGCTTGAATCAACAAGCTGAAGCTTGAAAACTCTCAGATA
GACTATGGACTACAATTTTATAAGCTCGTCCAACTGTCCCCTACCTCCTC
GCTGATGGCCCACCTCAAGCTAGTCGATAGAGCAGCTGGTAGCGAGAACT
TGCGTGCTTGTCGTGGTTCTGAAGGGTTGTCCCTGATCATCTGAAACAGA
CAAGAGTGGCGTGTACCCATGTAATCTCGGGGTGAATACGAACAACACCA
CGTCGATGTCTATCATTTGGCCATATCCCGTCCCAGGCTGTTGCTACCAA
GACGGGGACTGTCGACGATTTCAACGTTCCGGCGATCCATTCCTCACCGG
AGGCAGTATCACACCCAACGGAGCGCGTTCAACGAAACCCTACGTACCCT
GGAGGAAGGTACGGTGGTTTTCGTCATCGACTTCCAGGAGCAGCTTCAGC
TCATCGAGTAGGACGAAGTACAAGCCCAGCACTGGCTACACAAAAGTGTA
ACGATATTCCCCTGTCCCATCTACCTCAAGTGGAAGGGCCGTGTGTGGTC
CTAATCTTTCCAAGTTCTCAGCGACGATAGAACCCAGGACAATGCGTGGG
TGCAGCATGTCATGTTCAAGATTCTGACGGAGCATGTCCCAGCGTTGGTG
CGGAAACTAGGCGCTCCCGCCATGGTGCTAGCGATCTTCTTCACCGATGA
CTGTGCCAAGCAGTTCAACTGCAGGTTTCATTTCGGCTGGCTTGCTTCCC
GCGCGGTGATGGTTCGTGACACCAACGGCGAGTCTACCAACGCACCAGTG
CACATTGAGCATCACTACTTTGGTAGCTGCCACGGAAAAAGCTCTTCTGA
TAGCGAAGGGGCCAACACCAAAGGCGTAACGAGGCAAAACATCATCAACC
AGTCCTGGGTAGTCCAGAGCCCCGGACAC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7664:1323..7351+

>mRNA_Ecto-sp13_S_contig7664.18892.1 ID=mRNA_Ecto-sp13_S_contig7664.18892.1|Name=mRNA_Ecto-sp13_S_contig7664.18892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1932bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7664:1323..7351+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCTCTCCAGGCATACGGTTCGTGGCCCGCCACCTGGTCCTTACCAC
CCTCACCCTGTTGAGGATCGTGGCTGGGAGCGTTGGGATGAGCTTACCAC
CGCCCCAAGATTTGGATGCCGCATCTCCAGACACTGCTTCGATCAACTCA
TCACTGCGTGATATTGCAGGTGGCCTGTCGTCGACAACCCCAGCACGCTC
CTCGTCGGGGGAGAACACTCGGCGCCACACACAAGGCTCAGTCGACCTCA
ACGCTCTACCTTCTCCATACACTGTGTTCAGGAAGTGTCAGGATGTACAA
AAATGCAGGTTCAAAGCCAGGTTGAACAAAACCGTGGATACTGCGGTGGA
GATAGCGTGTCAAACTGCGGCCAAGGAGTTCGGAAGGCCTGTCGACGACT
TCACAACATTGGCTCGCCAGAGTCTCGTGTCTCACAACGGTGGTCGAACA
ATAGGCGAAGGAGACCCGGTATCTCCGGACAAGCCCATGCACGCCATCAG
GGAAACCTGGGCGAAAATTAATCAGCCCCACGTCGTAGCGGCCGAGGCCG
GGTATAATGCGCGACGGACCATCCTCGGTGCGATCGCCGGCGAGAAGGTG
AAGTACAAGACCGCCAAGGAATTCCTAGGAGGCACTCTGAGCCAGAAAGC
CTTCAACGAGGCAAAGGAACGGAGATTGGCGGCTCTCGAAGACGGCGACG
TGTCGGCATTGGCAGGGAAGAGAAACGAGAGGTCCGATAACTTGCAGGAG
AAGTACCCAATGGCATGCGGTCGGGTGGAGCAGAGTGTTTCCGAGCGCAC
CCAGCCTTCTGCAAACCTTACGAAGACGAATCACGACTACCGGCAGCGTG
GGGATCACATTCGGTCTGACGCGGACAACTCTTTGGTCTGCGTCCACCCG
GATAAGTGTGAAACTCACGGAGTACACTACATGACTGGGATCCAGCGGCA
CCTGTATCACGAATGCATGGATGACCTACAAGCGGCTTTTAGTGCCGGGA
GAGCTGAAATCGCCTGTATTTCCCGAAGTTCTTCCGACAAGATGGTCCCC
TTCTACGTGGTGGAGCAATCAATACGATCCTGCCTCTGCGTCCATTGCTA
CAAGGCAAATCTTATCACTGTTGCCCTGTATCAACTGTGGCCAACCCTTC
ACCATGGCGATAACTCGGGTTCAGGCTGCACGTGCAACTGCGGGTTTTGC
TCGGATGGAGCATGTCGGACCTTCCTGCCGTTCGCCACGGAGAAGTCGGT
GCACGGCATGGGGGACCTCAGCGACCTGCTCCTGTGCGAAAAGGTCTTCA
TCTACAGAGGTCAAGATGGCAAAGACGTCAAGGCACATCGGTCGGCCTGT
GTTTCAGGACATTGCCCAACATGCCAGCGCAAGCAAGCGGCATTCTTCGG
TTGTCCCCGTCATCAGGGCACTACCGATCGACGTTTCCCTGCTTCTACCG
CCACCTTGGGCGTGTGCCCTAGCGCCATGGAAGGCCAGCCAGGAAGGGTG
AAGTGGTCCATGTTCACCTCTGTGGATGCTGAAGGACGCGCAACGGACGC
CCGCCGCCTCGCTGGACCGCAGACACCCGACGACGATGATGGCGACTGGA
AACCAAGAGCGGCGTCGGATACATCTAGGCCGAAAAAGGCTGTTGCTACC
AAGACGGGGACTGTCGACGATTTCAACGTTCCGGCGATCCATTCCTCACC
GGAGGCAGTATCACACCCAACGGAGCGCGTTCAACGAAACCCTACGTACC
CTGGAGGAAGGTACGGTGGTTTTCGTCATCGACTTCCAGGAGCAGCTTCA
GCTCATCGAGTAGGACGAAGTACAAGCCCAGCACTGGCTACACAAAAGTG
TAACGATATTCCCCTGTCCCATCTACCTCAAGTGGAAGGGCCGTGTGTGG
TCCTAATCTTTCCAAGTTCTCAGCGACGATAG