mRNA_Ecto-sp13_S_contig76615.18890.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76615.18890.1
Unique NamemRNA_Ecto-sp13_S_contig76615.18890.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76615.18890.1 vs. uniprot
Match: D7G8T7_ECTSI (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T7_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.040e-26
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    7 RAQVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDR 156
            R  +PEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDR
Sbjct:  238 RLHIPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDR 287
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BLAST of mRNA_Ecto-sp13_S_contig76615.18890.1 vs. uniprot
Match: A0A7J9FZ93_9ROSI (Protein-serine/threonine phosphatase n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9FZ93_9ROSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.630e-22
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 PTRAQVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDR 156
            P+   +   +GSHFTVCGD HGQFYD++NIF+LNGLPS +NPYLFNGDFVDR
Sbjct:   82 PSLVDINVPDGSHFTVCGDVHGQFYDLINIFELNGLPSEENPYLFNGDFVDR 133
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BLAST of mRNA_Ecto-sp13_S_contig76615.18890.1 vs. uniprot
Match: UPI000E6F7E67 (serine/threonine-protein phosphatase 5-like isoform X2 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F7E67)

HSP 1 Score: 90.5 bits (223), Expect = 3.210e-22
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 PTRAQVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDR 156
            P+   V   EG HFTVCGD HGQFYD+LNIF+LNGLPS  NPYLFNGDFVD+
Sbjct:   25 PSLVDVSIAEGKHFTVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDK 76
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BLAST of mRNA_Ecto-sp13_S_contig76615.18890.1 vs. uniprot
Match: UPI00200F00C3 (metallophosphoesterase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00200F00C3)

HSP 1 Score: 90.9 bits (224), Expect = 7.880e-22
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 PTRAQVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDR 156
            P+   +   EG HFTVCGD HGQ+YD+LNIF+LNGLPS +NPYLFNGDFVDR
Sbjct:   44 PSLVDINVPEGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDR 95
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BLAST of mRNA_Ecto-sp13_S_contig76615.18890.1 vs. uniprot
Match: UPI000E7057FA (serine/threonine-protein phosphatase 5-like isoform X1 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E7057FA)

HSP 1 Score: 90.5 bits (223), Expect = 1.560e-21
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 PTRAQVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDR 156
            P+   V   EG HFTVCGD HGQFYD+LNIF+LNGLPS  NPYLFNGDFVD+
Sbjct:   25 PSLVDVSIAEGKHFTVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDK 76
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BLAST of mRNA_Ecto-sp13_S_contig76615.18890.1 vs. uniprot
Match: A0A7J9B7G0_GOSGO (Protein-serine/threonine phosphatase n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J9B7G0_GOSGO)

HSP 1 Score: 91.7 bits (226), Expect = 3.080e-21
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 PTRAQVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDR 156
            P+   +   +GSHFTVCGD HGQFYD++NIF+LNGLPS +NPYLFNGDFVDR
Sbjct:   31 PSLVDINVPDGSHFTVCGDVHGQFYDLINIFELNGLPSEENPYLFNGDFVDR 82
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BLAST of mRNA_Ecto-sp13_S_contig76615.18890.1 vs. uniprot
Match: A0A4Y7JKW0_PAPSO (SER_THR_PHOSPHATASE domain-containing protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JKW0_PAPSO)

HSP 1 Score: 90.5 bits (223), Expect = 5.880e-21
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 PTRAQVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDR 156
            P+   V   EG HFTVCGD HGQFYD+LNIF+LNGLPS  NPYLFNGDFVD+
Sbjct:   25 PSLVDVSIAEGKHFTVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDK 76
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BLAST of mRNA_Ecto-sp13_S_contig76615.18890.1 vs. uniprot
Match: A0A3P7Q8D8_DIBLA (Protein-serine/threonine phosphatase n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7Q8D8_DIBLA)

HSP 1 Score: 90.1 bits (222), Expect = 5.970e-21
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 PTRAQVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDR 156
            PT  ++   +G+ FTVCGD HGQFYD++NIF+LNGLPS +NPYLFNGDFVDR
Sbjct:  142 PTMVEIDVPDGAKFTVCGDVHGQFYDLVNIFELNGLPSTENPYLFNGDFVDR 193
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BLAST of mRNA_Ecto-sp13_S_contig76615.18890.1 vs. uniprot
Match: A0A7R9TVH2_9VIRI (Protein-serine/threonine phosphatase n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TVH2_9VIRI)

HSP 1 Score: 93.2 bits (230), Expect = 6.070e-21
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    4 TRAQVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDR 156
            T   +P EEG+HFTVCGD HGQ+YD+LNI++LNGLPS +NPYLFNGDFVDR
Sbjct:  200 TVMDIPIEEGNHFTVCGDVHGQYYDLLNIWELNGLPSVENPYLFNGDFVDR 250
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BLAST of mRNA_Ecto-sp13_S_contig76615.18890.1 vs. uniprot
Match: Q6Q0C2_NICBE (Serine/threonine-protein phosphatase 5 (Fragment) n=1 Tax=Nicotiana benthamiana TaxID=4100 RepID=Q6Q0C2_NICBE)

HSP 1 Score: 90.1 bits (222), Expect = 6.590e-21
Identity = 38/52 (73.08%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 PTRAQVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFVDR 156
            P+   +   EG HFTVCGD HGQFYD+LNIF LNGLPS  NPYLFNGDFVDR
Sbjct:  179 PSLVDIIVPEGKHFTVCGDVHGQFYDLLNIFDLNGLPSEDNPYLFNGDFVDR 230
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76615.18890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8T7_ECTSI1.040e-2694.00Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
A0A7J9FZ93_9ROSI2.630e-2271.15Protein-serine/threonine phosphatase n=1 Tax=Gossy... [more]
UPI000E6F7E673.210e-2273.08serine/threonine-protein phosphatase 5-like isofor... [more]
UPI00200F00C37.880e-2271.15metallophosphoesterase n=1 Tax=Escherichia coli Ta... [more]
UPI000E7057FA1.560e-2173.08serine/threonine-protein phosphatase 5-like isofor... [more]
A0A7J9B7G0_GOSGO3.080e-2171.15Protein-serine/threonine phosphatase n=2 Tax=Gossy... [more]
A0A4Y7JKW0_PAPSO5.880e-2173.08SER_THR_PHOSPHATASE domain-containing protein n=1 ... [more]
A0A3P7Q8D8_DIBLA5.970e-2169.23Protein-serine/threonine phosphatase n=1 Tax=Dibot... [more]
A0A7R9TVH2_9VIRI6.070e-2174.51Protein-serine/threonine phosphatase n=1 Tax=Prasi... [more]
Q6Q0C2_NICBE6.590e-2173.08Serine/threonine-protein phosphatase 5 (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76615contigEcto-sp13_S_contig76615:354..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score110.5
Seed ortholog evalue2.4e-22
Seed eggNOG ortholog2880.D7G8T7
Preferred namePPP5C
Model size159
KEGG koko:K04460,ko:K11800
KEGG Pathwayko04010,map04010
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000165,GO:0000166,GO:0000278,GO:0000302,GO:0001101,GO:0001932,GO:0001933,GO:0001965,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005819,GO:0005829,GO:0005856,GO:0005911,GO:0006139,GO:0006325,GO:0006351,GO:0006464,GO:0006468,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0006950,GO:0006979,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0008017,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009410,GO:0009416,GO:0009506,GO:0009628,GO:0009636,GO:0009639,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010017,GO:0010019,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010288,GO:0010380,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0010647,GO:0010941,GO:0012505,GO:0014070,GO:0014072,GO:0015630,GO:0015631,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016310,GO:0016311,GO:0016569,GO:0016570,GO:0016576,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0017157,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030054,GO:0030176,GO:0030425,GO:0030554,GO:0031072,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032269,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032879,GO:0032991,GO:0033036,GO:0033143,GO:0033145,GO:0033365,GO:0033554,GO:0033993,GO:0034599,GO:0034613,GO:0034614,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035690,GO:0035970,GO:0036094,GO:0036211,GO:0036477,GO:0042175,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042542,GO:0042578,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043170,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043278,GO:0043279,GO:0043412,GO:0043531,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0045920,GO:0045936,GO:0046483,GO:0046677,GO:0046686,GO:0046906,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051169,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051246,GO:0051248,GO:0051259,GO:0051276,GO:0051291,GO:0051641,GO:0051649,GO:0051716,GO:0051879,GO:0055044,GO:0060255,GO:0060359,GO:0060548,GO:0060627,GO:0065003,GO:0065007,GO:0070013,GO:0070262,GO:0070301,GO:0070542,GO:0070727,GO:0070887,GO:0071214,GO:0071236,GO:0071241,GO:0071248,GO:0071276,GO:0071478,GO:0071482,GO:0071489,GO:0071704,GO:0071840,GO:0071944,GO:0072347,GO:0072686,GO:0080090,GO:0090056,GO:0090304,GO:0097159,GO:0097237,GO:0097367,GO:0097447,GO:0097458,GO:0097659,GO:0098827,GO:0101031,GO:0104004,GO:0120025,GO:0120038,GO:0140096,GO:1901214,GO:1901215,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1901576,GO:1901698,GO:1901700,GO:1901701,GO:1902325,GO:1903530,GO:1903531,GO:1904550,GO:1990635,GO:2000322,GO:2000324
Exons1
EggNOG free text desc.response to arachidonic acid
EggNOG OGsCOG0639@1,KOG0376@2759
EC3.1.3.16
Cds size159
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464036.5892646-CDS-Ecto-sp13_S_contig76615:353..5121681464036.5892646-CDS-Ecto-sp13_S_contig76615:353..512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76615 354..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76615.18890.1prot_Ecto-sp13_S_contig76615.18890.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76615 354..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76615.18890.1

>prot_Ecto-sp13_S_contig76615.18890.1 ID=prot_Ecto-sp13_S_contig76615.18890.1|Name=mRNA_Ecto-sp13_S_contig76615.18890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
PTRAQVPEEEGSHFTVCGDTHGQFYDVLNIFKLNGLPSAKNPYLFNGDFV
DR*
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mRNA from alignment at Ecto-sp13_S_contig76615:354..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76615.18890.1 ID=mRNA_Ecto-sp13_S_contig76615.18890.1|Name=mRNA_Ecto-sp13_S_contig76615.18890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76615:354..512- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAACGCGTGCACAGGTACCGGAGGAAGAAGGGAGCCACTTTACCGTGTG
CGGGGACACGCACGGACAGTTTTACGACGTCCTCAACATCTTCAAGCTCA
ACGGCTTGCCCTCGGCGAAAAACCCGTATCTCTTCAACGGGGACTTCGTG
GACAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76615:354..512-

>mRNA_Ecto-sp13_S_contig76615.18890.1 ID=mRNA_Ecto-sp13_S_contig76615.18890.1|Name=mRNA_Ecto-sp13_S_contig76615.18890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76615:354..512- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAACGCGTGCACAGGTACCGGAGGAAGAAGGGAGCCACTTTACCGTGTG
CGGGGACACGCACGGACAGTTTTACGACGTCCTCAACATCTTCAAGCTCA
ACGGCTTGCCCTCGGCGAAAAACCCGTATCTCTTCAACGGGGACTTCGTG
GACAGGTAA
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