mRNA_Ecto-sp13_S_contig7656.18882.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7656.18882.1
Unique NamemRNA_Ecto-sp13_S_contig7656.18882.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7656.18882.1 vs. uniprot
Match: D7FPH7_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH7_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.750e-5
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = -3 
Query:    3 GVPEAEGWGAANWTIPTLARKY 68
            GVPEAEGWGAANWTIPTLARKY
Sbjct:   63 GVPEAEGWGAANWTIPTLARKY 84
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BLAST of mRNA_Ecto-sp13_S_contig7656.18882.1 vs. uniprot
Match: A0A6H5K4Q5_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Q5_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.700e-5
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = -3 
Query:    3 GVPEAEGWGAANWTIPTLARKY 68
            GVPEAEGWGAANWTIPTLARKY
Sbjct:   43 GVPEAEGWGAANWTIPTLARKY 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7656.18882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPH7_ECTSI1.750e-5100.00JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K4Q5_9PHAE3.700e-5100.00JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7656contigEcto-sp13_S_contig7656:6545..7127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size583
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464035.75453-UTR-Ecto-sp13_S_contig7656:6544..67451681464035.75453-UTR-Ecto-sp13_S_contig7656:6544..6745Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7656 6545..6745 +
1681464035.7775939-UTR-Ecto-sp13_S_contig7656:7048..71271681464035.7775939-UTR-Ecto-sp13_S_contig7656:7048..7127Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7656 7049..7127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464035.7666402-CDS-Ecto-sp13_S_contig7656:6745..70481681464035.7666402-CDS-Ecto-sp13_S_contig7656:6745..7048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7656 6746..7048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7656.18882.1prot_Ecto-sp13_S_contig7656.18882.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7656 6746..7048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7656.18882.1

>prot_Ecto-sp13_S_contig7656.18882.1 ID=prot_Ecto-sp13_S_contig7656.18882.1|Name=mRNA_Ecto-sp13_S_contig7656.18882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MPCMYGMCMRLGLSCTRLEPREGKTSAFSGEAHPKHTTTTNSSTPTNDER
GAVTSRRQVHETSCCASASALSDTCRASASVCICSSGGRQEWRCVRPRRK
*
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mRNA from alignment at Ecto-sp13_S_contig7656:6545..7127+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7656.18882.1 ID=mRNA_Ecto-sp13_S_contig7656.18882.1|Name=mRNA_Ecto-sp13_S_contig7656.18882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=583bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7656:6545..7127+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTACTTTCGTGCGAGGGTGGGTATTGTCCAGTTTGCGGCTCCCCACCC
CTCCGCCTCCGGCACGCCCTAAGGTCGCGGGGCGCGAACGAAACACAAGG
AGGGCGGGAAGGGGTGGGTGAGGGGGTCGGTTAGGGGATAACACCGGTAA
GTCTGAACGGCCCGATGCGTTACAGAGCTGGGCTCGCAACCGTCATTGAA
CATGCCATGCATGTACGGCATGTGCATGCGGTTAGGGTTGTCCTGCACCC
GCTTGGAGCCGAGAGAGGGAAAAACGTCGGCATTCTCCGGAGAGGCGCAC
CCCAAACACACCACCACCACCAACAGCAGCACCCCCACCAACGACGAAAG
AGGCGCGGTGACTAGTCGGAGACAGGTCCACGAAACAAGCTGCTGTGCCT
CCGCCTCGGCCCTATCCGACACGTGCCGCGCGTCGGCGTCTGTCTGCATC
TGTTCATCTGGTGGGCGTCAAGAGTGGCGGTGTGTCCGCCCAAGGCGAAA
ATAGCGACCTGCGCATGCTATCTATCTTGTCTCAAACACACATCGGGGTA
CTAGAGTCGGTTGCCCACAGGCCGTCAGCTCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7656:6545..7127+

>mRNA_Ecto-sp13_S_contig7656.18882.1 ID=mRNA_Ecto-sp13_S_contig7656.18882.1|Name=mRNA_Ecto-sp13_S_contig7656.18882.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7656:6545..7127+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCATGCATGTACGGCATGTGCATGCGGTTAGGGTTGTCCTGCACCCG
CTTGGAGCCGAGAGAGGGAAAAACGTCGGCATTCTCCGGAGAGGCGCACC
CCAAACACACCACCACCACCAACAGCAGCACCCCCACCAACGACGAAAGA
GGCGCGGTGACTAGTCGGAGACAGGTCCACGAAACAAGCTGCTGTGCCTC
CGCCTCGGCCCTATCCGACACGTGCCGCGCGTCGGCGTCTGTCTGCATCT
GTTCATCTGGTGGGCGTCAAGAGTGGCGGTGTGTCCGCCCAAGGCGAAAA
TAG
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