mRNA_Ecto-sp13_S_contig12245.1888.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12245.1888.1
Unique NamemRNA_Ecto-sp13_S_contig12245.1888.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12245.1888.1 vs. uniprot
Match: D8LPA7_ECTSI (Cathepsine B n=2 Tax=root TaxID=1 RepID=D8LPA7_ECTSI)

HSP 1 Score: 487 bits (1253), Expect = 1.660e-171
Identity = 231/252 (91.67%), Postives = 240/252 (95.24%), Query Frame = 1 
Query:    1 LSFQELLSCFNPKGNNVGCEVGGSPEAAFRHGVQNGFALDSECPYAQQKTTQIVVCDIRKQQGPRTHIQRGSVKSLCEDPSRYKEGSPQYMKIVTNNVKRMKTELYLHGPIC*TIQVYKSMYSYDGLSIFEGPTEDDEYVGGHVAVLFVFAEEVNGVEEGFDGDTWFIKNSWSASWPIKSPASKGLFYMRAGKNCCGVESRASCAQPVITDEIRKNMVPLKESRYHGYSEYVSDPERANFITKATKLRTLVK 756
            LSFQELLSCFNPKGNNVGCEVGGSPEAAFRHGV+ GFALD+E PY QQKTTQIV CD RKQQGPRT IQRGSVKSLCEDPSRYKEGSPQYMKI+ NNV+RMKTELYLHGPIC TIQVYKSMYSYDGLSIFEGPT+DDEYVGGH AVLF FAEEVNGVEEGFDGDTWFIKNSWSASWPIKSPASKGLFYMRAG NCCGVESRASCAQPVIT+E+R+NMVPLKES YHGYSEYVSDPERANFITKAT+LRTLVK
Sbjct:  130 LSFQELLSCFNPKGNNVGCEVGGSPEAAFRHGVEKGFALDAEYPYVQQKTTQIVACDARKQQGPRTFIQRGSVKSLCEDPSRYKEGSPQYMKIIKNNVRRMKTELYLHGPICCTIQVYKSMYSYDGLSIFEGPTDDDEYVGGHAAVLFGFAEEVNGVEEGFDGDTWFIKNSWSASWPIKSPASKGLFYMRAGINCCGVESRASCAQPVITEELRRNMVPLKESSYHGYSEYVSDPERANFITKATRLRTLVK 381
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BLAST of mRNA_Ecto-sp13_S_contig12245.1888.1 vs. uniprot
Match: B5LWL5_9PHYC (Putative cysteine protease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWL5_9PHYC)

HSP 1 Score: 227 bits (579), Expect = 1.270e-69
Identity = 116/253 (45.85%), Postives = 166/253 (65.61%), Query Frame = 1 
Query:    1 LSFQELLSCFNPKGNNVGCEVGGSPEAAFRHGVQNGFALDSECPYAQQKTTQIVVCDIRKQQGPRTHIQRGSVKSLCEDPSRYKEGSPQYMKIVTNNVKRMKTELYLHGPIC*TIQVYKSMYSYDGLSIFEGPTEDDEYVGGHVAVLFVFAEE-VNGVEEGFD--GDTWFIKNSWSASWPIKSPASKGLFYMRAGKNCCGVESRASCAQPVITDEIRKNMVP-LKESRYHGYSEYVSDPERANFITKATKLRT 747
            LS QE++SC++   + + C  GG PE A+++ V+NG  +D + PY Q  +  I  C   + +GPR ++Q  SV+SLC DP  Y++ S +   ++  N+  MK EL ++GP   TI VY+++Y YDGLS+++G  +D E+VGGH  V   + +E +NGVE GFD  G  W I+NSWS  WP+KSPAS+G FY++ G N CG+ESRAS A  V TDEI  N V  L ESRY  Y+ YV+DP+R   +++ TKLR+
Sbjct:  108 LSVQEMISCWDGH-DGLACSKGGVPEEAYQYIVENGIGMDEDYPYEQSNSDDIRPCVPSRLKGPRLYVQGSSVRSLCIDPYEYEQSSGERRGVIDMNICNMKKELLMNGPFVCTIMVYQNLYDYDGLSVYQGH-DDSEFVGGHSVVCVGYCDEGINGVEPGFDVPGGYWVIRNSWS-DWPLKSPASEGYFYIQKGSNVCGIESRASRALVVPTDEILNNTVANLNESRYVSYTSYVNDPDRQLLVSRVTKLRS 357
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12245.1888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPA7_ECTSI1.660e-17191.67Cathepsine B n=2 Tax=root TaxID=1 RepID=D8LPA7_ECT... [more]
B5LWL5_9PHYC1.270e-6945.85Putative cysteine protease n=1 Tax=Feldmannia spec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12245contigEcto-sp13_S_contig12245:1..774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score262.7
Seed ortholog evalue9.7e-68
Seed eggNOG ortholog2880.D8LPA7
Preferred nameTINAGL1
Model size774
KEGG koko:K01363
KEGG Pathwayko04140,ko04142,ko04210,ko04612,ko04621,ko04924,map04140,map04142,map04210,map04612,map04621,map04924
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005198,GO:0005201,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006807,GO:0006810,GO:0007155,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0016192,GO:0016197,GO:0016787,GO:0017147,GO:0019538,GO:0022610,GO:0023051,GO:0023056,GO:0030111,GO:0030177,GO:0030312,GO:0031012,GO:0033036,GO:0035592,GO:0035593,GO:0036094,GO:0042600,GO:0043170,GO:0043236,GO:0044238,GO:0044421,GO:0044424,GO:0044464,GO:0045184,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050840,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060828,GO:0062023,GO:0065007,GO:0070011,GO:0071692,GO:0071704,GO:0071944,GO:0090263,GO:0097159,GO:0140096,GO:1901265,GO:1901363,GO:1901564
Exons1
EggNOG free text desc.scavenger receptor activity
EggNOG OGsKOG1544@1,KOG1544@2759
EC3.4.22.1
Cds size414
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko01002,ko03110,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.2932317-UTR-Ecto-sp13_S_contig12245:0..3601681462651.2932317-UTR-Ecto-sp13_S_contig12245:0..360Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12245 1..360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.3039303-CDS-Ecto-sp13_S_contig12245:360..7741681462651.3039303-CDS-Ecto-sp13_S_contig12245:360..774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12245 361..774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12245.1888.1prot_Ecto-sp13_S_contig12245.1888.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12245 361..774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12245.1888.1

>prot_Ecto-sp13_S_contig12245.1888.1 ID=prot_Ecto-sp13_S_contig12245.1888.1|Name=mRNA_Ecto-sp13_S_contig12245.1888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MYSYDGLSIFEGPTEDDEYVGGHVAVLFVFAEEVNGVEEGFDGDTWFIKN
SWSASWPIKSPASKGLFYMRAGKNCCGVESRASCAQPVITDEIRKNMVPL
KESRYHGYSEYVSDPERANFITKATKLRTLVKRKQTR*
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mRNA from alignment at Ecto-sp13_S_contig12245:1..774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12245.1888.1 ID=mRNA_Ecto-sp13_S_contig12245.1888.1|Name=mRNA_Ecto-sp13_S_contig12245.1888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12245:1..774+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCTTTCCAAGAACTGCTTAGCTGTTTCAATCCGAAAGGAAACAATGT
CGGCTGCGAAGTTGGCGGATCACCGGAAGCGGCATTTCGACACGGCGTGC
AAAATGGTTTTGCGCTCGATTCCGAGTGTCCTTACGCCCAGCAGAAGACG
ACTCAGATTGTTGTATGTGATATCAGGAAACAACAAGGTCCGAGGACTCA
TATTCAGAGAGGATCTGTCAAGTCTCTCTGCGAGGACCCTTCTCGATACA
AGGAGGGGAGCCCCCAGTACATGAAGATCGTTACAAACAACGTGAAGCGG
ATGAAGACCGAACTGTATTTACACGGACCTATCTGTTGAACCATTCAAGT
CTACAAATCGATGTACAGTTACGACGGACTCTCCATCTTCGAGGGACCGA
CCGAAGACGACGAGTACGTGGGTGGACACGTCGCTGTCTTGTTTGTTTTT
GCAGAGGAAGTGAATGGTGTCGAAGAGGGCTTCGATGGCGACACATGGTT
CATAAAAAACTCGTGGAGTGCGTCGTGGCCGATAAAGTCACCGGCCTCCA
AGGGACTCTTTTACATGCGCGCGGGAAAAAATTGCTGTGGGGTAGAATCA
AGAGCCTCGTGTGCCCAGCCCGTGATAACAGACGAAATACGAAAGAATAT
GGTCCCCCTCAAGGAAAGTAGGTACCACGGCTACTCGGAATATGTTTCCG
ACCCAGAACGCGCCAACTTCATTACCAAAGCAACGAAGCTGCGCACACTG
GTGAAGAGGAAGCAAACGCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12245:1..774+

>mRNA_Ecto-sp13_S_contig12245.1888.1 ID=mRNA_Ecto-sp13_S_contig12245.1888.1|Name=mRNA_Ecto-sp13_S_contig12245.1888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12245:1..774+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACAGTTACGACGGACTCTCCATCTTCGAGGGACCGACCGAAGACGA
CGAGTACGTGGGTGGACACGTCGCTGTCTTGTTTGTTTTTGCAGAGGAAG
TGAATGGTGTCGAAGAGGGCTTCGATGGCGACACATGGTTCATAAAAAAC
TCGTGGAGTGCGTCGTGGCCGATAAAGTCACCGGCCTCCAAGGGACTCTT
TTACATGCGCGCGGGAAAAAATTGCTGTGGGGTAGAATCAAGAGCCTCGT
GTGCCCAGCCCGTGATAACAGACGAAATACGAAAGAATATGGTCCCCCTC
AAGGAAAGTAGGTACCACGGCTACTCGGAATATGTTTCCGACCCAGAACG
CGCCAACTTCATTACCAAAGCAACGAAGCTGCGCACACTGGTGAAGAGGA
AGCAAACGCGTTGA
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