mRNA_Ecto-sp13_S_contig76549.18880.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76549.18880.1
Unique NamemRNA_Ecto-sp13_S_contig76549.18880.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: D8LM69_ECTSI (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM69_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 4.150e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 VSDAEFLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRVGSCADEEEE 213
            VSDAEFLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRVGSCADEEEE
Sbjct:  166 VSDAEFLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRVGSCADEEEE 236
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BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A7S1ETW3_9RHOD (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETW3_9RHOD)

HSP 1 Score: 58.9 bits (141), Expect = 1.620e-8
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:    1 VSDAEFLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSV--IHRVG 189
            V D ++L+++ L+ LL +   G V+ TPW  YI++ FVF WWD +  KE L    D+   IHR G
Sbjct:  236 VDDVKYLNREELKELLEQDGNGIVKVTPWFKYIVNAFVFQWWDQLDSKEVLRDAVDTQHQIHRFG 300
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BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A2D0SV34_ICTPU (Isopentenyl-diphosphate Delta-isomerase n=6 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0SV34_ICTPU)

HSP 1 Score: 51.6 bits (122), Expect = 6.590e-6
Identity = 23/58 (39.66%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:   16 FLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSV-IHRV 186
            ++ K+ L+ LL +AERG+V+ TPW + I + F+F WWD++   + L    D   IHR+
Sbjct:  233 YVSKEELKELLEKAERGQVQITPWFSLIANTFLFTWWDNL---QNLKQFTDHERIHRM 287
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BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A553RH49_9TELE (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553RH49_9TELE)

HSP 1 Score: 51.2 bits (121), Expect = 8.630e-6
Identity = 22/57 (38.60%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   16 FLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRV 186
            ++ K+ LR +L +AER E+E TPW   I  KF+F WWD++ + ++    +   IHR+
Sbjct:  214 YVSKEELREILEKAERKELEITPWFRLIAQKFLFQWWDNLHNLKQFVDHQR--IHRM 268
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BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A3B5LAJ6_9TELE (Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Poeciliinae TaxID=586240 RepID=A0A3B5LAJ6_9TELE)

HSP 1 Score: 49.3 bits (116), Expect = 4.020e-5
Identity = 20/57 (35.09%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   16 FLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRV 186
            ++ K+ L+++L +AER E++ TPW   I + F+F WWD++ + ++   +  S IHR+
Sbjct:  196 YVSKEELKAMLDKAERKELDVTPWFGLIANTFLFKWWDNLHNLKRF--MDHSNIHRM 250
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BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A3B5QRT8_XIPMA (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=A0A3B5QRT8_XIPMA)

HSP 1 Score: 49.3 bits (116), Expect = 4.130e-5
Identity = 20/57 (35.09%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   16 FLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRV 186
            ++ K+ L+++L +AER E++ TPW   I + F+F WWD++ + ++   +  S IHR+
Sbjct:  204 YVSKEELKAMLDKAERKELDVTPWFGLIANTFLFKWWDNLHNLKRF--MDHSNIHRM 258
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BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A087Y4D9_POEFO (Isopentenyl-diphosphate Delta-isomerase n=11 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A087Y4D9_POEFO)

HSP 1 Score: 49.3 bits (116), Expect = 4.410e-5
Identity = 20/57 (35.09%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   16 FLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRV 186
            ++ K+ L+++L +AER E++ TPW   I + F+F WWD++ + ++   +  S IHR+
Sbjct:  232 YVSKEELKAMLEKAERKELDVTPWFGLIANTFLFKWWDNLHNLKEF--MDHSNIHRM 286
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BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A0S7GV02_9TELE (Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A0S7GV02_9TELE)

HSP 1 Score: 48.9 bits (115), Expect = 5.010e-5
Identity = 20/57 (35.09%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   16 FLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRV 186
            ++ K+ L+++L +AER E++ TPW   I + F+F WWD++ + ++   +  S IHR+
Sbjct:  173 YVSKEELKAMLDKAERKELDVTPWFGLIANTFLFTWWDNLHNLKQF--MDHSNIHRM 227
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LM69_ECTSI4.150e-44100.00Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ec... [more]
A0A7S1ETW3_9RHOD1.620e-841.54Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ti... [more]
A0A2D0SV34_ICTPU6.590e-639.66Isopentenyl-diphosphate Delta-isomerase n=6 Tax=Si... [more]
A0A553RH49_9TELE8.630e-638.60Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Da... [more]
A0A3B5LAJ6_9TELE4.020e-535.09Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Po... [more]
A0A3B5QRT8_XIPMA4.130e-535.09Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Xi... [more]
A0A087Y4D9_POEFO4.410e-535.09Isopentenyl-diphosphate Delta-isomerase n=11 Tax=C... [more]
A0A0S7GV02_9TELE5.010e-535.09Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Cy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76549contigEcto-sp13_S_contig76549:119..334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score151.0
Seed ortholog evalue2.1e-34
Seed eggNOG ortholog2880.D8LM69
Preferred nameIDI1
Model size216
KEGG rclassRC00455
KEGG koko:K01823,ko:K21773
KEGG ReactionR01123
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04218,map00900,map01100,map01110,map01130,map04218
KEGG ModuleM00095,M00096,M00364,M00365,M00366,M00367
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000287,GO:0003006,GO:0003674,GO:0003824,GO:0004452,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0007275,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009507,GO:0009536,GO:0009791,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009987,GO:0010033,GO:0010894,GO:0014070,GO:0016114,GO:0016125,GO:0016126,GO:0016853,GO:0016860,GO:0016863,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0022414,GO:0030145,GO:0032501,GO:0032502,GO:0035634,GO:0042221,GO:0042579,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045337,GO:0045338,GO:0045540,GO:0045541,GO:0045833,GO:0045939,GO:0046165,GO:0046490,GO:0046872,GO:0046890,GO:0046914,GO:0048367,GO:0048519,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050810,GO:0050896,GO:0051055,GO:0061458,GO:0062012,GO:0062014,GO:0065007,GO:0071704,GO:0080090,GO:0090181,GO:0090206,GO:0090407,GO:0090567,GO:0106118,GO:0106119,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930,GO:1902931
Exons1
EggNOG free text desc.isopentenyl-diphosphate delta-isomerase activity
EggNOG OGsCOG1443@1,KOG0142@2759
EC5.3.3.2
Cds size216
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464035.7194593-CDS-Ecto-sp13_S_contig76549:118..3341681464035.7194593-CDS-Ecto-sp13_S_contig76549:118..334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76549 119..334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76549.18880.1prot_Ecto-sp13_S_contig76549.18880.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76549 119..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76549.18880.1

>prot_Ecto-sp13_S_contig76549.18880.1 ID=prot_Ecto-sp13_S_contig76549.18880.1|Name=mRNA_Ecto-sp13_S_contig76549.18880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
VSDAEFLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEK
LASLRDSVIHRVGSCADEEEE*
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mRNA from alignment at Ecto-sp13_S_contig76549:119..334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76549.18880.1 ID=mRNA_Ecto-sp13_S_contig76549.18880.1|Name=mRNA_Ecto-sp13_S_contig76549.18880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76549:119..334- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCGGACGCGGAGTTCCTAGACAAGGACGGGCTACGGTCGCTCCTGGC
GAGGGCCGAGCGGGGAGAGGTGGAGTTCACCCCGTGGTCGGCGTACATCA
TCGACAAGTTCGTCTTCGGGTGGTGGGACCACGTGGGGGACAAGGAGAAG
CTGGCCTCGTTGCGAGATAGCGTCATTCACCGAGTGGGCTCGTGTGCGGA
CGAGGAGGAGGAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76549:119..334-

>mRNA_Ecto-sp13_S_contig76549.18880.1 ID=mRNA_Ecto-sp13_S_contig76549.18880.1|Name=mRNA_Ecto-sp13_S_contig76549.18880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76549:119..334- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCGGACGCGGAGTTCCTAGACAAGGACGGGCTACGGTCGCTCCTGGC
GAGGGCCGAGCGGGGAGAGGTGGAGTTCACCCCGTGGTCGGCGTACATCA
TCGACAAGTTCGTCTTCGGGTGGTGGGACCACGTGGGGGACAAGGAGAAG
CTGGCCTCGTTGCGAGATAGCGTCATTCACCGAGTGGGCTCGTGTGCGGA
CGAGGAGGAGGAGTAA
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