prot_Ecto-sp13_S_contig76549.18880.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig76549.18880.1
Unique Nameprot_Ecto-sp13_S_contig76549.18880.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length72
Homology
BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: D8LM69_ECTSI (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM69_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 4.150e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0
Query:    1 VSDAEFLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRVGSCADEEEE 71
            VSDAEFLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRVGSCADEEEE
Sbjct:  166 VSDAEFLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRVGSCADEEEE 236          
BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A7S1ETW3_9RHOD (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETW3_9RHOD)

HSP 1 Score: 58.9 bits (141), Expect = 1.620e-8
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0
Query:    1 VSDAEFLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSV--IHRVG 63
            V D ++L+++ L+ LL +   G V+ TPW  YI++ FVF WWD +  KE L    D+   IHR G
Sbjct:  236 VDDVKYLNREELKELLEQDGNGIVKVTPWFKYIVNAFVFQWWDQLDSKEVLRDAVDTQHQIHRFG 300          
BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A2D0SV34_ICTPU (Isopentenyl-diphosphate Delta-isomerase n=6 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0SV34_ICTPU)

HSP 1 Score: 51.6 bits (122), Expect = 6.590e-6
Identity = 23/58 (39.66%), Postives = 37/58 (63.79%), Query Frame = 0
Query:    6 FLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSV-IHRV 62
            ++ K+ L+ LL +AERG+V+ TPW + I + F+F WWD++   + L    D   IHR+
Sbjct:  233 YVSKEELKELLEKAERGQVQITPWFSLIANTFLFTWWDNL---QNLKQFTDHERIHRM 287          
BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A553RH49_9TELE (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553RH49_9TELE)

HSP 1 Score: 51.2 bits (121), Expect = 8.630e-6
Identity = 22/57 (38.60%), Postives = 36/57 (63.16%), Query Frame = 0
Query:    6 FLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRV 62
            ++ K+ LR +L +AER E+E TPW   I  KF+F WWD++ + ++    +   IHR+
Sbjct:  214 YVSKEELREILEKAERKELEITPWFRLIAQKFLFQWWDNLHNLKQFVDHQR--IHRM 268          
BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A3B5LAJ6_9TELE (Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Poeciliinae TaxID=586240 RepID=A0A3B5LAJ6_9TELE)

HSP 1 Score: 49.3 bits (116), Expect = 4.020e-5
Identity = 20/57 (35.09%), Postives = 38/57 (66.67%), Query Frame = 0
Query:    6 FLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRV 62
            ++ K+ L+++L +AER E++ TPW   I + F+F WWD++ + ++   +  S IHR+
Sbjct:  196 YVSKEELKAMLDKAERKELDVTPWFGLIANTFLFKWWDNLHNLKRF--MDHSNIHRM 250          
BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A3B5QRT8_XIPMA (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=A0A3B5QRT8_XIPMA)

HSP 1 Score: 49.3 bits (116), Expect = 4.130e-5
Identity = 20/57 (35.09%), Postives = 38/57 (66.67%), Query Frame = 0
Query:    6 FLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRV 62
            ++ K+ L+++L +AER E++ TPW   I + F+F WWD++ + ++   +  S IHR+
Sbjct:  204 YVSKEELKAMLDKAERKELDVTPWFGLIANTFLFKWWDNLHNLKRF--MDHSNIHRM 258          
BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A087Y4D9_POEFO (Isopentenyl-diphosphate Delta-isomerase n=11 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A087Y4D9_POEFO)

HSP 1 Score: 49.3 bits (116), Expect = 4.410e-5
Identity = 20/57 (35.09%), Postives = 38/57 (66.67%), Query Frame = 0
Query:    6 FLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRV 62
            ++ K+ L+++L +AER E++ TPW   I + F+F WWD++ + ++   +  S IHR+
Sbjct:  232 YVSKEELKAMLEKAERKELDVTPWFGLIANTFLFKWWDNLHNLKEF--MDHSNIHRM 286          
BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Match: A0A0S7GV02_9TELE (Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A0S7GV02_9TELE)

HSP 1 Score: 48.9 bits (115), Expect = 5.010e-5
Identity = 20/57 (35.09%), Postives = 38/57 (66.67%), Query Frame = 0
Query:    6 FLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEKLASLRDSVIHRV 62
            ++ K+ L+++L +AER E++ TPW   I + F+F WWD++ + ++   +  S IHR+
Sbjct:  173 YVSKEELKAMLDKAERKELDVTPWFGLIANTFLFTWWDNLHNLKQF--MDHSNIHRM 227          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76549.18880.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LM69_ECTSI4.150e-44100.00Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ec... [more]
A0A7S1ETW3_9RHOD1.620e-841.54Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ti... [more]
A0A2D0SV34_ICTPU6.590e-639.66Isopentenyl-diphosphate Delta-isomerase n=6 Tax=Si... [more]
A0A553RH49_9TELE8.630e-638.60Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Da... [more]
A0A3B5LAJ6_9TELE4.020e-535.09Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Po... [more]
A0A3B5QRT8_XIPMA4.130e-535.09Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Xi... [more]
A0A087Y4D9_POEFO4.410e-535.09Isopentenyl-diphosphate Delta-isomerase n=11 Tax=C... [more]
A0A0S7GV02_9TELE5.010e-535.09Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Cy... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.79.10coord: 1..62
e-value: 1.0E-8
score: 36.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76549contigEcto-sp13_S_contig76549:119..334 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76549.18880.1mRNA_Ecto-sp13_S_contig76549.18880.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig76549 119..334 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig76549.18880.1 ID=prot_Ecto-sp13_S_contig76549.18880.1|Name=mRNA_Ecto-sp13_S_contig76549.18880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
VSDAEFLDKDGLRSLLARAERGEVEFTPWSAYIIDKFVFGWWDHVGDKEK
LASLRDSVIHRVGSCADEEEE*
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