prot_Ecto-sp13_S_contig12243.1887.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12243.1887.1
Unique Nameprot_Ecto-sp13_S_contig12243.1887.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length213
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12243.1887.1 vs. uniprot
Match: A0A6H5L0F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F7_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 2.620e-98
Identity = 168/210 (80.00%), Postives = 172/210 (81.90%), Query Frame = 0 
Query:    1 MQMLATIVCSVSVLLLALAFFRPEAGKCASARTLAFVGGALMATYALFQLVAVVLAGVLAQEFDNLPNDDDTSYFSGYDGYYTFWDAGYEAEVGATFGVGVTALILAVIMTVALCLCARRTGDGPLYKCCYSLMLANKSNGIPSSASGGGVGGGGAKGVPVAADLREGSQPTSVAAARPGATEQPSQWQHYQQAQPQRQPPPRYDTLPSA 210
            MQMLATIVCSVSVLLLALAFFRPEAGKCAS RTLAFVGGALMATYALFQLVAVVLA VLAQEFDNLPNDDDTSY SGYDG+YTF++AGYEAEVG TFGVGVTALILAVIMTV LCLCA RTGDGPLYKCC+SLMLANKSNGIPSS   GG      KGVPV ADL     P SVAAARPGATEQPSQ             PP Y  LPSA
Sbjct:  101 MQMLATIVCSVSVLLLALAFFRPEAGKCASTRTLAFVGGALMATYALFQLVAVVLAAVLAQEFDNLPNDDDTSYLSGYDGFYTFFEAGYEAEVGPTFGVGVTALILAVIMTVVLCLCATRTGDGPLYKCCHSLMLANKSNGIPSSGGEGGXXXXXXKGVPVVADL-----PASVAAARPGATEQPSQXXXXXXXXXXXXXPPPYGILPSA 305
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BLAST of mRNA_Ecto-sp13_S_contig12243.1887.1 vs. uniprot
Match: A0A6H5KJK8_9PHAE (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJK8_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.300e-17
Identity = 55/140 (39.29%), Postives = 82/140 (58.57%), Query Frame = 0 
Query:    1 MQMLATIVCSVSVLLLALAFFRPEAG-KCASARTLAFVGGALMATYALFQLVAVVLAGVLAQEFDNLPNDDDTSYFSGYDGYYTFWDAGYEAEVGATFGVGVTALILAVIMTVALCLCARRTGDGPLYKCCYSLMLANKS 139
            MQ +A +V SVS++L  LA FRP AG KC S ++LA   G+LM  +A F+++A VL  V+ +E D    + +T +  G            EA++GATFG+ V A++L V+  V++   AR +GDGP +KC    M  N +
Sbjct:  136 MQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDG---EFNTGFGFG------------EADLGATFGLAVVAVVLGVVQAVSVLTFARSSGDGPFFKCLNECMAMNNA 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12243.1887.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0F7_9PHAE2.620e-9880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJK8_9PHAE3.300e-1739.29WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 90..94
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..60
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..34
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..71
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 95..118
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..89
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 119..212
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..19
score: 0.633
NoneNo IPR availableTMHMMTMhelixcoord: 4..21
NoneNo IPR availableTMHMMTMhelixcoord: 34..56
NoneNo IPR availableTMHMMTMhelixcoord: 96..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12243contigEcto-sp13_S_contig12243:280..1458 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12243.1887.1mRNA_Ecto-sp13_S_contig12243.1887.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12243 265..1458 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12243.1887.1 ID=prot_Ecto-sp13_S_contig12243.1887.1|Name=mRNA_Ecto-sp13_S_contig12243.1887.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MQMLATIVCSVSVLLLALAFFRPEAGKCASARTLAFVGGALMATYALFQL
VAVVLAGVLAQEFDNLPNDDDTSYFSGYDGYYTFWDAGYEAEVGATFGVG
VTALILAVIMTVALCLCARRTGDGPLYKCCYSLMLANKSNGIPSSASGGG
VGGGGAKGVPVAADLREGSQPTSVAAARPGATEQPSQWQHYQQAQPQRQP
PPRYDTLPSAGF*
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