mRNA_Ecto-sp13_S_contig76516.18874.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76516.18874.1
Unique NamemRNA_Ecto-sp13_S_contig76516.18874.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76516.18874.1 vs. uniprot
Match: D8LKT1_ECTSI (Dual specificity protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.770e-16
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    4 RRMKQQAGEVEGKLSCPNKACGARLGSLKWTGAQCSC 114
            R MKQQAGE+EGKLSCPNKACGARLGSLKWTGAQCSC
Sbjct:   95 RWMKQQAGEMEGKLSCPNKACGARLGSLKWTGAQCSC 131
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BLAST of mRNA_Ecto-sp13_S_contig76516.18874.1 vs. uniprot
Match: A0A0C9UFD5_SPHS4 (Uncharacterized protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9UFD5_SPHS4)

HSP 1 Score: 53.9 bits (128), Expect = 1.790e-7
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    1 WRRMKQQAGEVEGKLSCPNKACGARLGSLKWTGAQCSC 114
            W     +AG + GK++CPNK CGA+LGS  W G QCSC
Sbjct:   26 WMEPFLEAGNMAGKITCPNKKCGAKLGSYDWAGVQCSC 63
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BLAST of mRNA_Ecto-sp13_S_contig76516.18874.1 vs. uniprot
Match: A0A0C9V3I6_SPHS4 (Uncharacterized protein n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9V3I6_SPHS4)

HSP 1 Score: 53.9 bits (128), Expect = 2.590e-7
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    1 WRRMKQQAGEVEGKLSCPNKACGARLGSLKWTGAQCSC 114
            W     +AG + GK++CPNK CGA+LGS  W G QCSC
Sbjct:  508 WMEPFLEAGNMAGKITCPNKKCGAKLGSYDWAGVQCSC 545
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BLAST of mRNA_Ecto-sp13_S_contig76516.18874.1 vs. uniprot
Match: A0A511KKB5_RHOTO (Uncharacterized protein n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KKB5_RHOTO)

HSP 1 Score: 51.6 bits (122), Expect = 1.700e-6
Identity = 20/38 (52.63%), Postives = 25/38 (65.79%), Query Frame = 1 
Query:    1 WRRMKQQAGEVEGKLSCPNKACGARLGSLKWTGAQCSC 114
            W     + G + GK+SCPNK CGA+LG+  W G QCSC
Sbjct:  491 WMSPILETGVLAGKISCPNKKCGAKLGNFDWAGTQCSC 528
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BLAST of mRNA_Ecto-sp13_S_contig76516.18874.1 vs. uniprot
Match: A0A8H7G9P4_9AGAM (DSPc domain-containing protein n=2 Tax=Athelia sp. TMB TaxID=2748771 RepID=A0A8H7G9P4_9AGAM)

HSP 1 Score: 51.6 bits (122), Expect = 1.700e-6
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:    1 WRRMKQQAGEVEGKLSCPNKACGARLGSLKWTGAQCSC 114
            W +   Q G+V GK+ CPNK CGA+LG+ +W G QC C
Sbjct:  459 WMQPFLQDGQVAGKIMCPNKKCGAKLGNYEWPGMQCGC 496
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BLAST of mRNA_Ecto-sp13_S_contig76516.18874.1 vs. uniprot
Match: A0A2A9NH78_9AGAR (Uncharacterized protein n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NH78_9AGAR)

HSP 1 Score: 51.2 bits (121), Expect = 2.320e-6
Identity = 19/38 (50.00%), Postives = 25/38 (65.79%), Query Frame = 1 
Query:    1 WRRMKQQAGEVEGKLSCPNKACGARLGSLKWTGAQCSC 114
            W     +AGE+ GK+ CPNK CGA+LG+  W G +C C
Sbjct:  476 WMEPVFEAGEIAGKIVCPNKKCGAKLGNYDWAGVKCGC 513
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BLAST of mRNA_Ecto-sp13_S_contig76516.18874.1 vs. uniprot
Match: A0A066XMJ5_COLSU (Putative dual specificity phosphatase n=1 Tax=Colletotrichum sublineola TaxID=1173701 RepID=A0A066XMJ5_COLSU)

HSP 1 Score: 51.2 bits (121), Expect = 2.320e-6
Identity = 19/38 (50.00%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 WRRMKQQAGEVEGKLSCPNKACGARLGSLKWTGAQCSC 114
            W R + + G +EG+LSCPN++CGA +G   W G +CSC
Sbjct:  373 WMREELEKGALEGRLSCPNRSCGAAVGRYSWRGFRCSC 410
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BLAST of mRNA_Ecto-sp13_S_contig76516.18874.1 vs. uniprot
Match: A0A7S1TTA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTA1_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.550e-6
Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   31 VEGKLSCPNKACGARLGSLKWTGAQCSC 114
            VEG++ CPN+ C +R+GSL W+GAQCSC
Sbjct:   62 VEGRIDCPNERCRSRIGSLSWSGAQCSC 89
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BLAST of mRNA_Ecto-sp13_S_contig76516.18874.1 vs. uniprot
Match: A0A0H2R1Q9_9AGAM (Uncharacterized protein n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2R1Q9_9AGAM)

HSP 1 Score: 50.8 bits (120), Expect = 3.170e-6
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 1 
Query:    1 WRRMKQQAGEVEGKLSCPNKACGARLGSLKWTGAQCSC 114
            W     + G V GK+ CPNK CGA+LG+  W G QCSC
Sbjct:  465 WMEPFLEKGSVGGKIICPNKKCGAKLGNFDWAGVQCSC 502
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BLAST of mRNA_Ecto-sp13_S_contig76516.18874.1 vs. uniprot
Match: A0A0C2WK73_AMAMK (Uncharacterized protein n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WK73_AMAMK)

HSP 1 Score: 50.8 bits (120), Expect = 3.170e-6
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 1 
Query:    1 WRRMKQQAGEVEGKLSCPNKACGARLGSLKWTGAQCSC 114
            W      AGEV GK+ CPNK CGA+LG+  W G +C C
Sbjct:  462 WMESFLAAGEVAGKIVCPNKKCGAKLGNYDWAGVKCGC 499
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76516.18874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKT1_ECTSI1.770e-1694.59Dual specificity protein phosphatase n=1 Tax=Ectoc... [more]
A0A0C9UFD5_SPHS41.790e-755.26Uncharacterized protein n=1 Tax=Sphaerobolus stell... [more]
A0A0C9V3I6_SPHS42.590e-755.26Uncharacterized protein n=1 Tax=Sphaerobolus stell... [more]
A0A511KKB5_RHOTO1.700e-652.63Uncharacterized protein n=1 Tax=Rhodosporidium tor... [more]
A0A8H7G9P4_9AGAM1.700e-652.63DSPc domain-containing protein n=2 Tax=Athelia sp.... [more]
A0A2A9NH78_9AGAR2.320e-650.00Uncharacterized protein n=1 Tax=Amanita thiersii S... [more]
A0A066XMJ5_COLSU2.320e-650.00Putative dual specificity phosphatase n=1 Tax=Coll... [more]
A0A7S1TTA1_9STRA2.550e-664.29Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0H2R1Q9_9AGAM3.170e-652.63Uncharacterized protein n=1 Tax=Schizopora paradox... [more]
A0A0C2WK73_AMAMK3.170e-652.63Uncharacterized protein n=1 Tax=Amanita muscaria (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76516contigEcto-sp13_S_contig76516:484..597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score76.6
Seed ortholog evalue2.5e-12
Seed eggNOG ortholog2880.D8LKT1
Model size114
KEGG koko:K09054,ko:K14165,ko:K14819
KEGG Pathwayko04141,ko05010,map04141,map05010
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
Ec32 ortholog descriptionDual specificity protein phosphatase
Ec32 orthologEc-11_005420.1
EC3.1.3.16,3.1.3.48
Cds size105
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464035.393314-UTR-Ecto-sp13_S_contig76516:483..4921681464035.393314-UTR-Ecto-sp13_S_contig76516:483..492Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig76516 484..492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464035.4080124-CDS-Ecto-sp13_S_contig76516:492..5971681464035.4080124-CDS-Ecto-sp13_S_contig76516:492..597Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76516 493..597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76516.18874.1prot_Ecto-sp13_S_contig76516.18874.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76516 493..597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76516.18874.1

>prot_Ecto-sp13_S_contig76516.18874.1 ID=prot_Ecto-sp13_S_contig76516.18874.1|Name=mRNA_Ecto-sp13_S_contig76516.18874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
MKQQAGEVEGKLSCPNKACGARLGSLKWTGAQCSC
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mRNA from alignment at Ecto-sp13_S_contig76516:484..597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76516.18874.1 ID=mRNA_Ecto-sp13_S_contig76516.18874.1|Name=mRNA_Ecto-sp13_S_contig76516.18874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76516:484..597+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCGCAGGATGAAGCAGCAGGCGGGGGAGGTGGAAGGAAAGCTGTCTTG
CCCGAACAAGGCGTGCGGGGCCCGGCTAGGCTCACTGAAGTGGACGGGGG
CGCAGTGTTCATGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76516:484..597+

>mRNA_Ecto-sp13_S_contig76516.18874.1 ID=mRNA_Ecto-sp13_S_contig76516.18874.1|Name=mRNA_Ecto-sp13_S_contig76516.18874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76516:484..597+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCAGCAGGCGGGGGAGGTGGAAGGAAAGCTGTCTTGCCCGAACAA
GGCGTGCGGGGCCCGGCTAGGCTCACTGAAGTGGACGGGGGCGCAGTGTT
CATGT
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