prot_Ecto-sp13_S_contig7651.18873.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7651.18873.1
Unique Nameprot_Ecto-sp13_S_contig7651.18873.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length38
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7651.18873.1 vs. uniprot
Match: D8LJX2_ECTSI (Farnesyltransferase, CAAX box, alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJX2_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.180e-14
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0 
Query:    1 MDVDDLQVPLRGFEDVTPIPQDDGPDPVVSIAYRHN 36
            MDVDDLQVPLRGFEDVTPIPQDD  DPVVSIAYRHN
Sbjct:    1 MDVDDLQVPLRGFEDVTPIPQDDSADPVVSIAYRHN 36
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BLAST of mRNA_Ecto-sp13_S_contig7651.18873.1 vs. uniprot
Match: A0A6L2PP13_COPFO (Uncharacterized protein n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PP13_COPFO)

HSP 1 Score: 43.9 bits (102), Expect = 9.760e-5
Identity = 17/26 (65.38%), Postives = 21/26 (80.77%), Query Frame = 0 
Query:   13 FEDVTPIPQDDGPDPVVSIAYRHNCE 38
            + DVTP+PQDDGP P+V+IAY   CE
Sbjct:   26 WRDVTPVPQDDGPYPIVAIAYSEKCE 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7651.18873.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJX2_ECTSI3.180e-1494.44Farnesyltransferase, CAAX box, alpha n=2 Tax=Ectoc... [more]
A0A6L2PP13_COPFO9.760e-565.38Uncharacterized protein n=1 Tax=Coptotermes formos... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.25.40.120coord: 9..38
e-value: 3.1E-5
score: 25.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7651contigEcto-sp13_S_contig7651:7242..7355 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7651.18873.1mRNA_Ecto-sp13_S_contig7651.18873.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7651 7242..7355 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7651.18873.1 ID=prot_Ecto-sp13_S_contig7651.18873.1|Name=mRNA_Ecto-sp13_S_contig7651.18873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MDVDDLQVPLRGFEDVTPIPQDDGPDPVVSIAYRHNCE
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