mRNA_Ecto-sp13_S_contig7651.18872.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7651.18872.1
Unique NamemRNA_Ecto-sp13_S_contig7651.18872.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7651.18872.1 vs. uniprot
Match: A0A6H5JGY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY4_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 3.150e-93
Identity = 166/229 (72.49%), Postives = 171/229 (74.67%), Query Frame = 2 
Query:   92 MGSVHGALPPLERNRRCRPQDEFGSSGENVPAASSIMPGGLDALSDLHTKLAHIQWRRHANDKSIRKALETTKRLQERDMMLQLSVDREGERARWTEAIVRDELARPVEISEMFLKDWEQREGEIRKRQLKETKLHLKSLKRVERTVASKKRSAITVQRPESRNAEGRGGGGERALERQEDDEALKERLRRLRFGVKEKRRELRRSASYSKDHIGTFSATDFKTGRGRC 778
            MGSV+ ALPPLE NRRCRPQDEFGSS ENVP  S I+ G  DALSDLHTKLAHIQWRRHANDKSIRKALETTKRLQERDMMLQLSVDREGE                                         TKLHLKSLKRVERTV SKK SAIT QRPESR+AEGRGG GERALE+QEDDEALKERLRR+R GVKEKRRELRRSASYSKD  GTFSAT FKTGRGRC
Sbjct:    1 MGSVYRALPPLEGNRRCRPQDEFGSSRENVPPRSIIVSGSGDALSDLHTKLAHIQWRRHANDKSIRKALETTKRLQERDMMLQLSVDREGE-----------------------------------------TKLHLKSLKRVERTVTSKKCSAITAQRPESRDAEGRGG-GERALEQQEDDEALKERLRRVRVGVKEKRRELRRSASYSKDQRGTFSATGFKTGRGRC 187
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7651.18872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGY4_9PHAE3.150e-9372.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7651contigEcto-sp13_S_contig7651:5048..6974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size893
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_010000.1
Cds size690
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7651.18872.1prot_Ecto-sp13_S_contig7651.18872.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7651 5160..6883 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464035.23648-UTR-Ecto-sp13_S_contig7651:5047..51591681464035.23648-UTR-Ecto-sp13_S_contig7651:5047..5159Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7651 5048..5159 -
1681464035.2973921-UTR-Ecto-sp13_S_contig7651:6883..69741681464035.2973921-UTR-Ecto-sp13_S_contig7651:6883..6974Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7651 6884..6974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464035.2483068-CDS-Ecto-sp13_S_contig7651:5159..54561681464035.2483068-CDS-Ecto-sp13_S_contig7651:5159..5456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7651 5160..5456 -
1681464035.2687073-CDS-Ecto-sp13_S_contig7651:5759..58821681464035.2687073-CDS-Ecto-sp13_S_contig7651:5759..5882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7651 5760..5882 -
1681464035.2775648-CDS-Ecto-sp13_S_contig7651:6307..63801681464035.2775648-CDS-Ecto-sp13_S_contig7651:6307..6380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7651 6308..6380 -
1681464035.2866185-CDS-Ecto-sp13_S_contig7651:6686..68831681464035.2866185-CDS-Ecto-sp13_S_contig7651:6686..6883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7651 6687..6883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7651.18872.1

>prot_Ecto-sp13_S_contig7651.18872.1 ID=prot_Ecto-sp13_S_contig7651.18872.1|Name=mRNA_Ecto-sp13_S_contig7651.18872.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
MGSVHGALPPLERNRRCRPQDEFGSSGENVPAASSIMPGGLDALSDLHTK
LAHIQWRRHANDKSIRKALETTKRLQERDMMLQLSVDREGERARWTEAIV
RDELARPVEISEMFLKDWEQREGEIRKRQLKETKLHLKSLKRVERTVASK
KRSAITVQRPESRNAEGRGGGGERALERQEDDEALKERLRRLRFGVKEKR
RELRRSASYSKDHIGTFSATDFKTGRGRC*
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mRNA from alignment at Ecto-sp13_S_contig7651:5048..6974-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7651.18872.1 ID=mRNA_Ecto-sp13_S_contig7651.18872.1|Name=mRNA_Ecto-sp13_S_contig7651.18872.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7651:5048..6974- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCTACGAGTGGGCAACAGAGGCAGAGAGAGGCGGAGAGAGAGAGCAG
GAGGACTCAAAGCGGGCGATTATCATCTAACCCAAGCCGCGATGGGTTCC
GTTCATGGGGCTCTACCCCCTTTAGAAAGAAACCGCCGATGCCGACCTCA
GGACGAGTTCGGTTCGAGCGGTGAGAATGTCCCAGCGGCATCAAGTATCA
TGCCCGGTGGCTTGGATGCCTTGAGCGATCTCCACACCAAGTTGGCGCAT
ATCCAATGGCGGAGGCATGCGAACGATAAAAGCATAAGGTGAGGACGGTG
CCGTTCCAACTACTCACATGCTCGGCTGGCTCCTCGCATCGCCGTGGACC
GGACTGAACACTACGACGAGGTGTGAGCGAGCCCTGCCGCACAACGCGCA
ACGCACTGCAGATTACATTGAAGAACACAGCATGTTGCAGCGTTGCAGTC
GCAAGGGATATCAGCAGACGGTTGTCACGTTCCGCGCCGTCTTACGACGC
TGTACGATTCGTCGACAGAAAATAAGAACACCTTGCAAGATAGTCTAACA
CACGTGGCGGCTTCACTCCTGGTGGCCTCCTGCTTCGGTCACAGGAAGGC
GCTCGAAACTACCAAACGGCTGCAAGAGCGTGACATGATGCTGCAGCTCT
CTGTCGATCGGGAAGGGGTGAGCTCCACGGTAGATTACTCGGTATGACTT
GTCGTAATGCTATCAAATTCGATACACGATATCCATCGATACAGAAGAAG
ATGGGGTTGGACGATGTGGTCTTTATTATCCCTGAATCAGGTCCGGGGCC
GGCCCTGTCAGGAAAAAGGATCGTGTTGATAACACCAACGCTACAAGCTT
CAACTTACTAACAAAGAAGTAACTGTTTCCTAGAGAGATACCGGACTGCT
GTGCAAGAGCTTTTGGTAGTGCTCTGATGCTGTAGAGAAAAGCGAACGTC
TGACAGGGCGGGGCTCGTGTACACTGATGGGGCAGGAAGTTCACATCCTT
GGAGCCAATCCCACGTACCTGCCAAATAGATAACAAACGAGTATGTGGCC
GCTTTGTCACCCGATCGCGGTTCGAGAAATGACCACAAATAGGAGAGAGC
GCGGTGGACGGAAGCCATCGTGAGAGACGAACTAGCGCGCCCAGTCGAGA
TTAGCGAAATGTTTTTGAAGGATTGGGAACAGCGAGAAGGAGAGATCCGA
AAGAGGCAGCTCAAGGTACGTACTCTACACCCCAGTATTCAGCAGTACCT
AAAATATTTCCTTGGCCGATGCAACCGTTGCGTGGAAATACTTTACCAGA
GTTTCACAACCATCACGATATTGGGGCGAAATACTTTCATACTTGTGACA
CACATAAGGTACAAGGCCCATTCTGACATACTCCATACAACTAACGCGTA
ACTGCCGCGACGCGTTCCAACTGAAGTTCCTCTGCCAGAAGTATTCACCG
TGACAACCCTTGCCTACACTAAACTTCGAAGTCTACAACGCGTGCACTCT
ACCGCCTTCTTTCTTCAGGAGACAAAACTCCATCTGAAAAGCCTCAAGCG
TGTAGAACGGACGGTTGCATCGAAGAAACGTAGCGCCATCACCGTCCAGC
GGCCTGAAAGCCGCAATGCCGAGGGACGAGGAGGAGGAGGAGAGCGCGCG
TTGGAGCGGCAAGAAGACGACGAAGCCTTGAAGGAGAGGCTGCGGAGATT
GCGCTTCGGGGTTAAAGAGAAGCGCAGAGAGCTTCGACGCAGCGCCTCTT
ATTCGAAAGATCACATAGGAACTTTTAGTGCCACTGACTTTAAGACTGGG
CGCGGACGATGCTAGTCGGTGGGTTGTCATTGAATCTATCACTGTGTTGA
TGGGTGGTTGGGAGGCATCTCGCCGGGCTAGCCTGTGCCATGTGGCTCGC
TCGCGCATCCAGGGGAGACATGTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7651:5048..6974-

>mRNA_Ecto-sp13_S_contig7651.18872.1 ID=mRNA_Ecto-sp13_S_contig7651.18872.1|Name=mRNA_Ecto-sp13_S_contig7651.18872.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7651:5048..6974- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTTCCGTTCATGGGGCTCTACCCCCTTTAGAAAGAAACCGCCGATG
CCGACCTCAGGACGAGTTCGGTTCGAGCGGTGAGAATGTCCCAGCGGCAT
CAAGTATCATGCCCGGTGGCTTGGATGCCTTGAGCGATCTCCACACCAAG
TTGGCGCATATCCAATGGCGGAGGCATGCGAACGATAAAAGCATAAGGAA
GGCGCTCGAAACTACCAAACGGCTGCAAGAGCGTGACATGATGCTGCAGC
TCTCTGTCGATCGGGAAGGGGAGAGAGCGCGGTGGACGGAAGCCATCGTG
AGAGACGAACTAGCGCGCCCAGTCGAGATTAGCGAAATGTTTTTGAAGGA
TTGGGAACAGCGAGAAGGAGAGATCCGAAAGAGGCAGCTCAAGGAGACAA
AACTCCATCTGAAAAGCCTCAAGCGTGTAGAACGGACGGTTGCATCGAAG
AAACGTAGCGCCATCACCGTCCAGCGGCCTGAAAGCCGCAATGCCGAGGG
ACGAGGAGGAGGAGGAGAGCGCGCGTTGGAGCGGCAAGAAGACGACGAAG
CCTTGAAGGAGAGGCTGCGGAGATTGCGCTTCGGGGTTAAAGAGAAGCGC
AGAGAGCTTCGACGCAGCGCCTCTTATTCGAAAGATCACATAGGAACTTT
TAGTGCCACTGACTTTAAGACTGGGCGCGGACGATGCTAG
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