mRNA_Ecto-sp13_S_contig7650.18871.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7650.18871.1
Unique NamemRNA_Ecto-sp13_S_contig7650.18871.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7650.18871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7650contigEcto-sp13_S_contig7650:4227..4760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size535
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464035.19635-UTR-Ecto-sp13_S_contig7650:4226..44061681464035.19635-UTR-Ecto-sp13_S_contig7650:4226..4406Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7650 4227..4406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464035.207927-CDS-Ecto-sp13_S_contig7650:4406..47601681464035.207927-CDS-Ecto-sp13_S_contig7650:4406..4760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7650 4407..4760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7650.18871.1prot_Ecto-sp13_S_contig7650.18871.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7650 4407..4760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7650.18871.1

>prot_Ecto-sp13_S_contig7650.18871.1 ID=prot_Ecto-sp13_S_contig7650.18871.1|Name=mRNA_Ecto-sp13_S_contig7650.18871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
MTQPTVASLPGAEAAAAAIRELTRDDPAGADNQKLFRTTQLQRVFADTSC
FCGLWRLWLLRAHRPAHDELFSLCVCLSRAHGECQGSSSLLSAVSCHQAG
QTQNRPARPPDDAKLING
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mRNA from alignment at Ecto-sp13_S_contig7650:4227..4760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7650.18871.1 ID=mRNA_Ecto-sp13_S_contig7650.18871.1|Name=mRNA_Ecto-sp13_S_contig7650.18871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7650:4227..4760+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCCGACCCTTTCCTTTTCCCAACGTCTCCTCTAGACTCTCTCAATCTC
TCACTCTCTCGCCAACGCCCTCCTGTTGAATTAATCAGCCAAACGCTTGC
GTTTGTGCGATCACGCCACAACAGTCGCGCCAGCCCGACACCCCGTCCCT
GAAGCTCTAGGCCTTCCCTTGTCCCGATCTATGACTCAACCTACTGTTGC
GTCTTTGCCAGGAGCAGAGGCAGCAGCAGCAGCAATCCGTGAGTTGACTC
GAGACGACCCCGCCGGCGCCGACAACCAAAAATTGTTTCGCACGACACAA
CTCCAACGGGTTTTCGCTGACACCTCTTGCTTCTGTGGCCTTTGGCGCTT
GTGGCTGCTCCGTGCCCACCGACCTGCACACGACGAACTCTTCTCTCTGT
GTGTATGTCTCTCTCGCGCGCACGGGGAATGCCAAGGCTCTTCCTCCCTG
CTGTCGGCTGTATCGTGCCACCAAGCAGGACAAACACAAAATCGTCCGGC
TAGACCCCCTGACGACGCCAAGCTCATTAACGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7650:4227..4760+

>mRNA_Ecto-sp13_S_contig7650.18871.1 ID=mRNA_Ecto-sp13_S_contig7650.18871.1|Name=mRNA_Ecto-sp13_S_contig7650.18871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7650:4227..4760+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTCAACCTACTGTTGCGTCTTTGCCAGGAGCAGAGGCAGCAGCAGC
AGCAATCCGTGAGTTGACTCGAGACGACCCCGCCGGCGCCGACAACCAAA
AATTGTTTCGCACGACACAACTCCAACGGGTTTTCGCTGACACCTCTTGC
TTCTGTGGCCTTTGGCGCTTGTGGCTGCTCCGTGCCCACCGACCTGCACA
CGACGAACTCTTCTCTCTGTGTGTATGTCTCTCTCGCGCGCACGGGGAAT
GCCAAGGCTCTTCCTCCCTGCTGTCGGCTGTATCGTGCCACCAAGCAGGA
CAAACACAAAATCGTCCGGCTAGACCCCCTGACGACGCCAAGCTCATTAA
CGGC
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