mRNA_Ecto-sp13_S_contig7648.18866.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7648.18866.1
Unique NamemRNA_Ecto-sp13_S_contig7648.18866.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7648.18866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7648contigEcto-sp13_S_contig7648:1541..2585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size249
Hectar predicted targeting categorysignal peptide
Exons3
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464034.7675166-UTR-Ecto-sp13_S_contig7648:1540..15431681464034.7675166-UTR-Ecto-sp13_S_contig7648:1540..1543Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7648 1541..1543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464034.7793975-CDS-Ecto-sp13_S_contig7648:1543..15721681464034.7793975-CDS-Ecto-sp13_S_contig7648:1543..1572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7648 1544..1572 +
1681464034.790389-CDS-Ecto-sp13_S_contig7648:2121..22841681464034.790389-CDS-Ecto-sp13_S_contig7648:2121..2284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7648 2122..2284 +
1681464034.8040948-CDS-Ecto-sp13_S_contig7648:2531..25851681464034.8040948-CDS-Ecto-sp13_S_contig7648:2531..2585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7648 2532..2585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7648.18866.1prot_Ecto-sp13_S_contig7648.18866.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7648 1544..2585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7648.18866.1

>prot_Ecto-sp13_S_contig7648.18866.1 ID=prot_Ecto-sp13_S_contig7648.18866.1|Name=mRNA_Ecto-sp13_S_contig7648.18866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MRKRFSISLRCPMLGCLIGVYYIVRACMVTWVFGMGWNTWTAEGQGQFEG
ISAGVDIVISPAYWTSIGGMTGWMARLLVMYD
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mRNA from alignment at Ecto-sp13_S_contig7648:1541..2585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7648.18866.1 ID=mRNA_Ecto-sp13_S_contig7648.18866.1|Name=mRNA_Ecto-sp13_S_contig7648.18866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1045bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7648:1541..2585+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGATGAGAAAGCGATTCTCGATATCCTTGAGGTGCGTAGTATGTTGCAC
GAGAGAGAAGAGAGGGGAAAGAAGAGAGGCAAAGACCCGTCATCCTCTCG
TGACGGGTGGAGAATTCTTACACACACTCATACACACACTCACGCTGAAC
GCAGCAGTTGTCACGAAAACCAAAGAATCAGGTGAGGATTTCATTTGTCT
ACTATATATAGTCTCGACTAGTAGCACGAACTACTACTGCAGTTTACCAC
AGAAGAACCCCATCCATGAGCGATGCGGCGCAATCGTGTTACCAGCCTAC
AGCTGCCGTCCAGGGAGGGACGACGGGGTATCCACCGCCCAACATCATGT
CGCGCATGTCACGCATCGAACTTGGAACTAGTGGGACAGGCCGGTGCACT
TATCGAAGAGGTTAATCTGCTTGCTGTAGGTTTCCACACACGATTAAACC
TCTCCAGCAATGTCGACCGCACTACAGTCTACATGTCCGTATGAGCGAGG
ATACGCCGCAACCACAATGCGAGTTATTGTAAAATTGTCAACCTTTCCGC
AATGTTGTTTTTGGTGGCACATGTACTTTAGGTGTCCGATGCTAGGTTGC
TTAATCGGAGTATATTACATCGTACGAGCGTGCATGGTGACCTGGGTCTT
TGGCATGGGATGGAACACGTGGACCGCCGAGGGACAAGGGCAATTCGAGG
GGATCTCTGCTGGCGTCGACATTGTCATCTCTCCGGCCTATTGGGTGCGT
GTTGCGTGTTGGTACAAGCTAAAGAGTATCCCACGTCCTACTTGCATGTG
GGGATTAGTCTTACGTATGCACGTACAGTAGTAATCTCCAGCTAGGAATT
TCGCGAGAAGGAAGAACCCCTTTGGCCTGCACCGTTTCGTCGCAGAGTTT
ATAGCAAAAAGAACGGCACTGCAACCTTTCGACCCACTCGTTGCCCTCTT
CTGGATCCCGCGCAATTTTGCTTCCCGATTTGGTCACACAGACTTCCATC
GGAGGGATGACTGGCTGGATGGCCCGCCTTTTGGTCATGTACGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7648:1541..2585+

>mRNA_Ecto-sp13_S_contig7648.18866.1 ID=mRNA_Ecto-sp13_S_contig7648.18866.1|Name=mRNA_Ecto-sp13_S_contig7648.18866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7648:1541..2585+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAAAGCGATTCTCGATATCCTTGAGGTGTCCGATGCTAGGTTGCTT
AATCGGAGTATATTACATCGTACGAGCGTGCATGGTGACCTGGGTCTTTG
GCATGGGATGGAACACGTGGACCGCCGAGGGACAAGGGCAATTCGAGGGG
ATCTCTGCTGGCGTCGACATTGTCATCTCTCCGGCCTATTGGACTTCCAT
CGGAGGGATGACTGGCTGGATGGCCCGCCTTTTGGTCATGTACGAC
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