mRNA_Ecto-sp13_S_contig7643.18860.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7643.18860.1
Unique NamemRNA_Ecto-sp13_S_contig7643.18860.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7643.18860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7643contigEcto-sp13_S_contig7643:653..1141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size489
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464034.3917382-CDS-Ecto-sp13_S_contig7643:652..9761681464034.3917382-CDS-Ecto-sp13_S_contig7643:652..976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7643 653..976 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464034.4043596-UTR-Ecto-sp13_S_contig7643:976..11411681464034.4043596-UTR-Ecto-sp13_S_contig7643:976..1141Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7643 977..1141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7643.18860.1prot_Ecto-sp13_S_contig7643.18860.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7643 653..976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7643.18860.1

>prot_Ecto-sp13_S_contig7643.18860.1 ID=prot_Ecto-sp13_S_contig7643.18860.1|Name=mRNA_Ecto-sp13_S_contig7643.18860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MKLNPDILGDKAGHFPGHFPSLRPDFNTASCSLTVDRYSCTPRAQGRPSG
KTQHRAFSLLQTASRLVVNQEHQSCQIEQANEADAQKTREQLCTQTTTTK
LIPTILV*
back to top

mRNA from alignment at Ecto-sp13_S_contig7643:653..1141+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7643.18860.1 ID=mRNA_Ecto-sp13_S_contig7643.18860.1|Name=mRNA_Ecto-sp13_S_contig7643.18860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7643:653..1141+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAATTAAACCCTGATATACTAGGCGACAAAGCTGGGCACTTTCCTGG
ACATTTTCCAAGCCTTCGCCCTGATTTTAATACAGCCTCTTGTTCCTTAA
CAGTAGACCGGTACTCATGTACACCCCGTGCTCAGGGCAGACCATCCGGC
AAAACTCAACACAGAGCTTTTTCGTTACTCCAAACGGCCAGCAGGCTGGT
CGTAAACCAGGAGCACCAATCGTGCCAGATAGAACAGGCCAACGAAGCTG
ACGCACAAAAAACGCGGGAACAATTATGCACGCAAACAACTACGACAAAA
CTAATACCAACAATACTTGTGTAGAAAAATATCATGACAACATGGCATCC
CCGTGCGGACCCTGACCCCACTATGCGTGGTGTTTGTCGGGTAGGTCGAC
GTCAACGCACCAGCTCTGCTTGCTCGATCTTCCCGATTTGCTCCAGGTAG
AGGTTTAAGTCCTTCGTTGCGCCCGCGGCTGATGTCCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7643:653..1141+

>mRNA_Ecto-sp13_S_contig7643.18860.1 ID=mRNA_Ecto-sp13_S_contig7643.18860.1|Name=mRNA_Ecto-sp13_S_contig7643.18860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7643:653..1141+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAATTAAACCCTGATATACTAGGCGACAAAGCTGGGCACTTTCCTGG
ACATTTTCCAAGCCTTCGCCCTGATTTTAATACAGCCTCTTGTTCCTTAA
CAGTAGACCGGTACTCATGTACACCCCGTGCTCAGGGCAGACCATCCGGC
AAAACTCAACACAGAGCTTTTTCGTTACTCCAAACGGCCAGCAGGCTGGT
CGTAAACCAGGAGCACCAATCGTGCCAGATAGAACAGGCCAACGAAGCTG
ACGCACAAAAAACGCGGGAACAATTATGCACGCAAACAACTACGACAAAA
CTAATACCAACAATACTTGTGTAG
back to top