mRNA_Ecto-sp13_S_contig7642.18858.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7642.18858.1
Unique NamemRNA_Ecto-sp13_S_contig7642.18858.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7642.18858.1 vs. uniprot
Match: D7FME9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME9_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 5.370e-5
Identity = 27/36 (75.00%), Postives = 27/36 (75.00%), Query Frame = 2 
Query:  245 TPAACFHRSKWLRLVASISMSWYSSDPDDDSCSDEE 352
            T  A  HRS WLRLVAS  MSWYSSD  DDSCSDEE
Sbjct:   57 TTQAWCHRSWWLRLVAS--MSWYSSDSHDDSCSDEE 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7642.18858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FME9_ECTSI5.370e-575.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7642contigEcto-sp13_S_contig7642:2058..3384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size451
Hectar predicted targeting categoryother localisation
Exons3
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464034.2794468-UTR-Ecto-sp13_S_contig7642:2057..21531681464034.2794468-UTR-Ecto-sp13_S_contig7642:2057..2153Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7642 2058..2153 -
1681464034.289731-UTR-Ecto-sp13_S_contig7642:2543..26261681464034.289731-UTR-Ecto-sp13_S_contig7642:2543..2626Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7642 2544..2626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464034.2996347-CDS-Ecto-sp13_S_contig7642:2626..26431681464034.2996347-CDS-Ecto-sp13_S_contig7642:2626..2643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7642 2627..2643 -
1681464034.3091207-CDS-Ecto-sp13_S_contig7642:3131..33841681464034.3091207-CDS-Ecto-sp13_S_contig7642:3131..3384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7642 3132..3384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7642.18858.1prot_Ecto-sp13_S_contig7642.18858.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7642 2627..3384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7642.18858.1

>prot_Ecto-sp13_S_contig7642.18858.1 ID=prot_Ecto-sp13_S_contig7642.18858.1|Name=mRNA_Ecto-sp13_S_contig7642.18858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
SRCASSRGCGRRGVYNTRARSALSRRLTYTVVGIRERRKIIIIPTRLLEE
ALHRCIIFCVLLQHGYFPGRELSPAEPVGRRHTSCVFPP*
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mRNA from alignment at Ecto-sp13_S_contig7642:2058..3384-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7642.18858.1 ID=mRNA_Ecto-sp13_S_contig7642.18858.1|Name=mRNA_Ecto-sp13_S_contig7642.18858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7642:2058..3384- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGGTGTGCGTCCAGCAGGGGATGCGGCAGGCGAGGAGTTTACAACAC
ACGGGCAAGGAGTGCACTTTCCAGAAGGTTGACATACACAGTAGTAGGTA
TTCGTGAGAGGCGAAAAATCATTATCATTCCGACACGACTGCTGGAGGAA
GCCCTGCATCGTTGCATCATTTTTTGTGTGCTGCTTCAACACGGGTATTT
TCCTGGGCGTGAGTTGAGCCCTGCTGAACCCGTTGGTCGACGGCACACCA
GCTGTGAGCTGACAATTTCATAGATGTATCGCCAAGCACGTACAGTCTTT
GTATGATCGAGCGTCTCGTGATCGCCCCACTAACCAGAGCATGAACTCAA
CAGCAGTGAGTGACTCAAGTGTTGCACTGCTTATGTTACCGCGGGTGACG
CAATATATCACACCCCCAGGACCGATAGCCGAAACTCAGTTACTCCACAC
AGTACCGAGAGTGGTGGTTTCGGAAATGGCGGCGTTGGAACTGTGTCGTT
GAGGGCGTTCTGCTAACAACGTGTCGATTGATTTGCACGCATTCGTCGTG
GAGTAACTGACCCCTGAAAGTCGGTCCTCCAGGGGGTCGGGGGGGGGTAT
GCATTGTCACCTACGGTTGCAGTGGAACGGTGAGAACGATGTTAACCTTG
TGATGAAACACAGCACTAACGTGCAATATGATTGCACCATATGTGGTAGC
CGTAATGACCTACGCGACAAAACGTCATGTTCCCTATCCAGGCGTGTTTC
CACCGTAGCAAGTGGCTTCGGCTGGTGGCTTCGATATCGATGTCGTGGTA
TTCTTCTGACCCTGACGATGATAGCTGCAGCGACGAGGAGGGTGAGGAAT
GCCCGGAGATGACACTGTTGGGCACCGTTATATTCTATTGGGTATGTGTG
CGAGTTGGTCTCAACGCGAACACGCTCTTGGAAGAAGCGTGAAGTCTCTC
GACATGGAGTCGAACCCTTGTAGGCGAATGATCACTTCCGGGAGCGGACG
GAGACAAGATGTTATTGATGATACCGATGTTGTGCCCTGGGTGGAATATC
CACGAAACGTCCATCATGCATGTACAAGAAAATTCCAACGATGTTACTAT
ACAGCCTATCATGGGCATTGAAGATCCTCCCATCATTGCGATTTGTTGTG
TTCTTCAATTGGGAGTGCTGTTATTGTACCACCCATCGGTAAATGAAATC
GCACTGTCTTCCACTGCTGTATCGACTCGAGATCGAGTAAAATTGCTCTT
CGGACGCTGTCAGGGCGATTGGCAGCTGAAGCCGCTACATATCTGCCGCT
ATATTTTTACTGCAACTCTGCGATCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7642:2058..3384-

>mRNA_Ecto-sp13_S_contig7642.18858.1 ID=mRNA_Ecto-sp13_S_contig7642.18858.1|Name=mRNA_Ecto-sp13_S_contig7642.18858.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7642:2058..3384- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGGTGTGCGTCCAGCAGGGGATGCGGCAGGCGAGGAGTTTACAACAC
ACGGGCAAGGAGTGCACTTTCCAGAAGGTTGACATACACAGTAGTAGGTA
TTCGTGAGAGGCGAAAAATCATTATCATTCCGACACGACTGCTGGAGGAA
GCCCTGCATCGTTGCATCATTTTTTGTGTGCTGCTTCAACACGGGTATTT
TCCTGGGCGTGAGTTGAGCCCTGCTGAACCCGTTGGTCGACGGCACACCA
GCTGCGTGTTTCCACCGTAG
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