prot_Ecto-sp13_S_contig76402.18857.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig76402.18857.1
Unique Nameprot_Ecto-sp13_S_contig76402.18857.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length72
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76402.18857.1 vs. uniprot
Match: A0A6H5KXW6_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 7.560e-22
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0 
Query:    7 SSISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRC 49
            +SISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRC
Sbjct:  434 ASISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRC 476
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BLAST of mRNA_Ecto-sp13_S_contig76402.18857.1 vs. uniprot
Match: D8LMP0_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP0_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.030e-21
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0 
Query:    8 SISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRC 49
            SISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRC
Sbjct:  440 SISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRC 481
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76402.18857.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXW6_9PHAE7.560e-2297.67FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LMP0_ECTSI1.030e-21100.00FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000306FYVE zinc fingerSMARTSM00064fyve_4coord: 16..70
e-value: 0.0072
score: 11.5
IPR000306FYVE zinc fingerPFAMPF01363FYVEcoord: 21..49
e-value: 3.3E-8
score: 33.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 9..68
e-value: 8.0E-10
score: 40.3
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 21..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76402contigEcto-sp13_S_contig76402:381..596 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76402.18857.1mRNA_Ecto-sp13_S_contig76402.18857.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig76402 381..596 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig76402.18857.1 ID=prot_Ecto-sp13_S_contig76402.18857.1|Name=mRNA_Ecto-sp13_S_contig76402.18857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
GGGGGGSSISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRCV
RCSWLYSSGVRAQKRASVFIPF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000306Znf_FYVE
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD