mRNA_Ecto-sp13_S_contig76402.18857.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig76402.18857.1
Unique NamemRNA_Ecto-sp13_S_contig76402.18857.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig76402.18857.1 vs. uniprot
Match: A0A6H5KXW6_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 7.560e-22
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   19 SSISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRC 147
            +SISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRC
Sbjct:  434 ASISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRC 476
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BLAST of mRNA_Ecto-sp13_S_contig76402.18857.1 vs. uniprot
Match: D8LMP0_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP0_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.030e-21
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:   22 SISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRC 147
            SISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRC
Sbjct:  440 SISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRC 481
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig76402.18857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXW6_9PHAE7.560e-2297.67FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LMP0_ECTSI1.030e-21100.00FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig76402contigEcto-sp13_S_contig76402:381..596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score95.9
Seed ortholog evalue8.2e-18
Seed eggNOG ortholog2880.D8LMP0
Model size216
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.regulation of ruffle assembly
EggNOG OGsCOG2930@1,KOG1843@2759
Cds size216
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464034.2333465-CDS-Ecto-sp13_S_contig76402:380..5961681464034.2333465-CDS-Ecto-sp13_S_contig76402:380..596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig76402 381..596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig76402.18857.1prot_Ecto-sp13_S_contig76402.18857.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig76402 381..596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig76402.18857.1

>prot_Ecto-sp13_S_contig76402.18857.1 ID=prot_Ecto-sp13_S_contig76402.18857.1|Name=mRNA_Ecto-sp13_S_contig76402.18857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
GGGGGGSSISVLGTHLRTYGWVRDEEVSECMNACGTEFTTLERRHHCRCV
RCSWLYSSGVRAQKRASVFIPF
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mRNA from alignment at Ecto-sp13_S_contig76402:381..596-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig76402.18857.1 ID=mRNA_Ecto-sp13_S_contig76402.18857.1|Name=mRNA_Ecto-sp13_S_contig76402.18857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76402:381..596- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGTGGCGGCGGCGGTTCCTCGATCTCCGTCCTGGGGACCCACCTACG
GACGTACGGGTGGGTGAGGGACGAGGAGGTGTCGGAGTGCATGAACGCCT
GCGGGACGGAGTTCACAACCCTGGAGAGGCGCCACCACTGCCGGTGCGTT
CGTTGCTCGTGGTTGTACTCATCTGGTGTGCGTGCGCAAAAGCGGGCGAG
TGTTTTCATTCCCTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig76402:381..596-

>mRNA_Ecto-sp13_S_contig76402.18857.1 ID=mRNA_Ecto-sp13_S_contig76402.18857.1|Name=mRNA_Ecto-sp13_S_contig76402.18857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig76402:381..596- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGTGGCGGCGGCGGTTCCTCGATCTCCGTCCTGGGGACCCACCTACG
GACGTACGGGTGGGTGAGGGACGAGGAGGTGTCGGAGTGCATGAACGCCT
GCGGGACGGAGTTCACAACCCTGGAGAGGCGCCACCACTGCCGGTGCGTT
CGTTGCTCGTGGTTGTACTCATCTGGTGTGCGTGCGCAAAAGCGGGCGAG
TGTTTTCATTCCCTTC
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