mRNA_Ecto-sp13_S_contig7636.18854.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7636.18854.1
Unique NamemRNA_Ecto-sp13_S_contig7636.18854.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7636.18854.1 vs. uniprot
Match: A0A6H5KKT0_9PHAE (PPM-type phosphatase domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT0_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 3.370e-114
Identity = 174/181 (96.13%), Postives = 175/181 (96.69%), Query Frame = 1
Query:  130 MGAYLSQPNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLACLDLNGKDSATPAADPATKIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGNLGLGLKQTFLKMDDMLRTPAGQAELLALKKASQGEDSDSDDGEDEVVDMDMLSKINPGTQMQIMEQMKRAMRDQFQSAGDLAE 672
            MGAYLSQPNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLACLDLNGKDSATPAADPA KIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGN GLGLKQTFLKMDDMLRTPAGQAELLALKKASQGEDSDSDDGED VVDM MLSKI P TQ+QIMEQMKRAMRDQFQSAGDLAE
Sbjct:    1 MGAYLSQPNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLACLDLNGKDSATPAADPAKKIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGNFGLGLKQTFLKMDDMLRTPAGQAELLALKKASQGEDSDSDDGED-VVDMGMLSKIKPETQLQIMEQMKRAMRDQFQSAGDLAE 180          
BLAST of mRNA_Ecto-sp13_S_contig7636.18854.1 vs. uniprot
Match: A0A813M8Z5_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813M8Z5_9BILA)

HSP 1 Score: 116 bits (291), Expect = 1.080e-24
Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 1
Query:  130 MGAYLSQPNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLACLDLNGKDSATPAADPATKIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGNLGLGLKQTFLKMDDMLRTPAGQAEL 498
            MGAYLS+PN+ K++ DGD+G L +GA+ MQGWR   ED+H + L+ +             K A FAVFDGHGGAEVA+YCS ++ D +K  + +K GNL   LK  FLK D+ L TP  Q EL
Sbjct:    1 MGAYLSEPNINKESMDGDNGHLSFGASSMQGWRIDQEDAHNSILNFD------------EKTAFFAVFDGHGGAEVAQYCSKYLPDYLKKLDDYKIGNLEDALKNLFLKFDESLLTPEAQKEL 111          
BLAST of mRNA_Ecto-sp13_S_contig7636.18854.1 vs. uniprot
Match: E1ZQM7_CHLVA (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQM7_CHLVA)

HSP 1 Score: 112 bits (280), Expect = 1.580e-24
Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  130 MGAYLSQPNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLACLDLNGKDSATPAADPATKIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGNLGLGLKQTFLKMDDMLRTPAGQAELLALKKASQGEDSDS 540
            MGAYLS P   K+T++G++   ++G A MQGWRT MED+H+A LDL          DPATK + FAV DGHGGAEVA++ + H+   V  +EAF+  +    L Q +L+MD++L     + EL +L+     E+ DS
Sbjct:    1 MGAYLSSPVRDKETEEGENDSFKYGIAAMQGWRTDMEDAHIAELDL----------DPATKTSLFAVLDGHGGAEVARFVANHLSQEVISSEAFQANDTERALIQAYLRMDELLVKEEHREELKSLRTKESEEEGDS 127          
BLAST of mRNA_Ecto-sp13_S_contig7636.18854.1 vs. uniprot
Match: A0A7J6N194_PERCH (PPM-type phosphatase domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6N194_PERCH)

HSP 1 Score: 112 bits (280), Expect = 6.750e-24
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  130 MGAYLSQPNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLACLDLNGKDSATPAADPATKIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGNLGLGLKQTFLKMDDMLRTPAGQAELLALKKASQGEDSDSDDG 549
            MGAY S+P   K+T DG D  + +G++ MQGWR+ MED+H+  L  NGKD              FAVFDGHGG EVA +C+ H  + +   E +K+GN    +++ +LK+D+M++    + EL+ L +   G D+  DDG
Sbjct:    1 MGAYRSKPQTDKETDDGSDPRIVFGSSAMQGWRSTMEDAHVHQLHFNGKDDE----------GLFAVFDGHGGKEVALFCARHFPECMASLEEYKKGNYKEAMRKAYLKLDEMMQDSKYREELIELIRLGDGNDTSEDDG 130          
BLAST of mRNA_Ecto-sp13_S_contig7636.18854.1 vs. uniprot
Match: A0A8J8T1H6_HALGN (PPM-type phosphatase domain-containing protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8T1H6_HALGN)

HSP 1 Score: 110 bits (274), Expect = 9.290e-24
Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = 1
Query:  130 MGAYLSQPNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLACLDL-NGKDSATPAADPATKIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGNLGLGLKQTFLKMDDMLRTPAGQAELLALKKASQGEDS 534
            MG YL+ P   KD+ DG++ +LR+GA GMQGWR  MEDSH+A LDL NG             +  F V+DGHGG EVA +   H+ D +K   +FK G+    L+  +L +D ML+TP G+++L   KK++ G+ S
Sbjct:    1 MGPYLTVPKREKDSYDGENAKLRYGATGMQGWRNTMEDSHIAELDLGNG-------------VHFFGVYDGHGGNEVADFVRDHLADELKKMASFKSGDYQKALEDIYLHIDIMLKTPEGKSKLQKYKKSTDGQSS 123          
BLAST of mRNA_Ecto-sp13_S_contig7636.18854.1 vs. uniprot
Match: A0A3M7S475_BRAPC (Phosphatase 1G n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7S475_BRAPC)

HSP 1 Score: 113 bits (282), Expect = 1.110e-23
Identity = 61/142 (42.96%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  130 MGAYLSQPNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLACLDLNGKDSATPAADPATKIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGNLGLGLKQTFLKMDDMLRTPAGQAELLALKKASQGEDSDSDDGED 555
            MGAYLS+PN  K++ DGD+  + +GA+ MQGWRT  ED+H + LD + K S             FAV+DGHGG EVA YC+ ++   +K  E + +GNL   LK  FLK D+ L TP    EL  L+  S  + S  D+ E+
Sbjct:   26 MGAYLSEPNTNKESMDGDNEHMSFGASSMQGWRTNQEDAHNSILDFDDKTSF------------FAVYDGHGGPEVALYCAKYLPQFLKNLEDYSKGNLEEALKSLFLKFDESLLTPGALQELKELRDLSSRKTSVKDEKEE 155          
BLAST of mRNA_Ecto-sp13_S_contig7636.18854.1 vs. uniprot
Match: A0A7R9V4N9_9CHLO (Protein-serine/threonine phosphatase n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V4N9_9CHLO)

HSP 1 Score: 110 bits (276), Expect = 1.250e-23
Identity = 67/157 (42.68%), Postives = 89/157 (56.69%), Query Frame = 1
Query:  130 MGAYLSQPNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLACLDLNGKDSATPAADPATKIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGNLGLGLKQTFLKMDDMLRTPAGQAELLALKKASQGEDSD----SDDGEDEVVDMDMLSKI 588
            MGAYLS P   KDT DG  G++ +G AGMQGWR  MED+H+A         A   AD  T I  F VFDGHGGAEVA++C  H+   ++ TE + + ++   L + F +MDDMLR      E+  LK    GED D      DGE  +  +D+L ++
Sbjct:    1 MGAYLSSPVTTKDTWDGTAGDVVYGGAGMQGWRRTMEDAHIA--------EAVDDAD--TSI--FGVFDGHGGAEVARFCQRHMVAELRKTEEYAQSHMDAALVRAFHRMDDMLRESKFSEEIEGLKVKEPGEDDDMGGEDGDGEGPMDALDLLKRV 145          
BLAST of mRNA_Ecto-sp13_S_contig7636.18854.1 vs. uniprot
Match: A0A5B8MK41_9CHLO (Protein-serine/threonine phosphatase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MK41_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 2.730e-23
Identity = 59/143 (41.26%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  130 MGAYLSQPNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLACLDLNGKDSATPAADPATKIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGNLGLGLKQTFLKMDDMLRTPAGQAELLALKKASQGE--DSDSDDGE 552
            MGAY+S P   K  + G++    +G + MQGWR  MED+HLACLD   +   +           + VFDGHGG EVA++CS H+ +V KG++  KEG +   L +TFL MDD++R  +   EL  L K       D+D +DGE
Sbjct:    1 MGAYMSAPITEKHGETGENEYFEYGVSSMQGWRIDMEDAHLACLDAKTEHQFS---------GIYGVFDGHGGREVAQFCSRHLLEVWKGSKGLKEGKMAESLAETFLGMDDLMRKESSYKELNQLAKRPDRNPLDADGEDGE 134          
BLAST of mRNA_Ecto-sp13_S_contig7636.18854.1 vs. uniprot
Match: A0A7S3VUI0_DUNTE (Protein-serine/threonine phosphatase (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VUI0_DUNTE)

HSP 1 Score: 104 bits (260), Expect = 2.870e-23
Identity = 68/156 (43.59%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  130 MGAYLSQPNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLA-CLDLNGKDSATPAADPATKIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGNLGLGLKQTFLKMDDMLRTPAGQAELLALKKASQGEDSDSD-DGEDEVVD-MDMLSKI 588
            MGAYLSQP  +K+  DG    + +G + MQGWR  MEDSHLA CL+        P A P   ++ F VFDGHGGAEVAK+C  ++ D        +E +LG  L ++F +MDDMLR    Q EL  +K  S  E+S +D DG +  +D +D+L ++
Sbjct:    1 MGAYLSQPITSKEEFDGRGESVEFGGSAMQGWRRTMEDSHLARCLEN------APGAPP---LSLFGVFDGHGGAEVAKFCERYMVDEFLRLRE-QESDLGTALVKSFHRMDDMLRDSRYQEELDQMKTKSSSEESKADEDGVNGTMDALDLLKRV 146          
BLAST of mRNA_Ecto-sp13_S_contig7636.18854.1 vs. uniprot
Match: A0A2P6V0V2_9CHLO (Protein-serine/threonine phosphatase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0V2_9CHLO)

HSP 1 Score: 112 bits (279), Expect = 3.950e-23
Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = 1
Query:  130 MGAYLSQPNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLACLDLNGKDSATPAADPATKIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGNLGLGLKQTFLKMDDMLRTPAGQAELLAL 507
            MG YLS P+  K++++G    L +G A MQGWR  MED+H+A LDL          DPA K + FAVFDGHGG  V++YC+AH+ +   G+EA+K G+L   +   + +MD +L +  G+AEL  L
Sbjct:  310 MGQYLSSPSTEKESEEGHAELLAYGLAAMQGWRVSMEDAHIAKLDL----------DPANKTSLFAVFDGHGGRAVSQYCAAHMAEEFLGSEAYKRGDLAGAITHAYFRMDQLLDSEEGKAELRRL 425          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7636.18854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKT0_9PHAE3.370e-11496.13PPM-type phosphatase domain-containing protein (Fr... [more]
A0A813M8Z5_9BILA1.080e-2449.59Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
E1ZQM7_CHLVA1.580e-2443.80PPM-type phosphatase domain-containing protein (Fr... [more]
A0A7J6N194_PERCH6.750e-2440.00PPM-type phosphatase domain-containing protein n=1... [more]
A0A8J8T1H6_HALGN9.290e-2443.38PPM-type phosphatase domain-containing protein n=1... [more]
A0A3M7S475_BRAPC1.110e-2342.96Phosphatase 1G n=1 Tax=Brachionus plicatilis TaxID... [more]
A0A7R9V4N9_9CHLO1.250e-2342.68Protein-serine/threonine phosphatase n=1 Tax=Chlam... [more]
A0A5B8MK41_9CHLO2.730e-2341.26Protein-serine/threonine phosphatase n=1 Tax=Chlor... [more]
A0A7S3VUI0_DUNTE2.870e-2343.59Protein-serine/threonine phosphatase (Fragment) n=... [more]
A0A2P6V0V2_9CHLO3.950e-2344.44Protein-serine/threonine phosphatase n=1 Tax=Micra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7636contigEcto-sp13_S_contig7636:1826..7370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score331.3
Seed ortholog evalue6.2e-88
Seed eggNOG ortholog2880.D7G3N0
Model size1160
KEGG koko:K01090,ko:K14803,ko:K17499,ko:K19705
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Exons7
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
Cds size1158
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7636.18854.1prot_Ecto-sp13_S_contig7636.18854.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7636 1826..7370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464034.0550475-CDS-Ecto-sp13_S_contig7636:1825..20031681464034.0550475-CDS-Ecto-sp13_S_contig7636:1825..2003Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7636 1826..2003 +
1681464034.0684128-CDS-Ecto-sp13_S_contig7636:2285..24491681464034.0684128-CDS-Ecto-sp13_S_contig7636:2285..2449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7636 2286..2449 +
1681464034.079526-CDS-Ecto-sp13_S_contig7636:4286..44331681464034.079526-CDS-Ecto-sp13_S_contig7636:4286..4433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7636 4287..4433 +
1681464034.090618-CDS-Ecto-sp13_S_contig7636:4726..47931681464034.090618-CDS-Ecto-sp13_S_contig7636:4726..4793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7636 4727..4793 +
1681464034.101308-CDS-Ecto-sp13_S_contig7636:5499..55811681464034.101308-CDS-Ecto-sp13_S_contig7636:5499..5581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7636 5500..5581 +
1681464034.1117096-CDS-Ecto-sp13_S_contig7636:5908..63151681464034.1117096-CDS-Ecto-sp13_S_contig7636:5908..6315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7636 5909..6315 +
1681464034.122081-CDS-Ecto-sp13_S_contig7636:7257..73701681464034.122081-CDS-Ecto-sp13_S_contig7636:7257..7370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7636 7258..7370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7636.18854.1

>prot_Ecto-sp13_S_contig7636.18854.1 ID=prot_Ecto-sp13_S_contig7636.18854.1|Name=mRNA_Ecto-sp13_S_contig7636.18854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=386bp
AGRLRPHTVCTPLPTVACAWRGGEGSRSVQDFLPAWRGRKEAAMGAYLSQ
PNLAKDTQDGDDGELRWGAAGMQGWRTGMEDSHLACLDLNGKDSATPAAD
PATKIAAFAVFDGHGGAEVAKYCSAHICDVVKGTEAFKEGNLGLGLKQTF
LKMDDMLRTPAGQAELLALKKASQGEDSDSDDGEDEVVDMDMLSKINPGT
QMQIMEQMKRAMRDQFQSAGDLAESGGGGDDDSSEHDDDSKYSSEEEEEE
EEEGGGDKGEESKTGEGAAGFPASTAAAEAPAMKAAPAGESNAEDKPEEK
EDGGAAEAEAAAAAGPLPKPLAAKGGERAKGDAEEANSTAEEWADGSSAG
LEPGARRRCGFDCGATAVMGLLVGGKTLVVANAGDS
back to top

mRNA from alignment at Ecto-sp13_S_contig7636:1826..7370+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7636.18854.1 ID=mRNA_Ecto-sp13_S_contig7636.18854.1|Name=mRNA_Ecto-sp13_S_contig7636.18854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5545bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7636:1826..7370+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGCAGGCTGAGACCGCACACCGTTTGTACGCCTCTCCCGACCGTCGC GTGTGCTTGGCGAGGCGGCGAGGGCTCTCGAAGCGTCCAGGATTTTCTCC CTGCCTGGCGGGGGAGAAAAGAAGCAGCAATGGGGGCGTATCTGTCGCAG CCCAACCTCGCAAAGGATACACAAGATGGTGGGTCGGTGTTTTTTGTTGA TTTTGTTGGTGGCGCCGCCAGCCGCAGCCGCGGCAGTTGCACACCCCAAC AACGACGAACCCGGCTCGGTCGTGTGTACTGCAGTCTGCTGGCGTGTGTG TGGGGGCCCGAGCAGAGAGGAGGTCGATAGGCGGTCCCTTGTTGGCTCTG CCTTGGGGCCAACGCCCCCGTTCGATGCTCCCACCGCCTCCATTCGTTAT TCCGTCCTGCTGCTGCTGCTGCTGCTGTAATGCTGCGGCTGCTGCTGCTG CCGTATGTAGGTGATGATGGGGAGCTGCGTTGGGGAGCGGCGGGCATGCA AGGCTGGCGCACGGGGATGGAGGACAGCCACCTGGCCTGCCTTGACCTCA ACGGGAAGGACTCGGCGACGCCAGCAGCAGACCCGGCTACGAAAATCGCT GCGTTCGCGGTGTTCGATGGTCATGTGAGAGACGACAACGTGCAATTAGA CCCAACAGCAGCGTGTTCTACATGTACTATAAATTTGTTTTGTATCTACA CGACTGCAAGATGAGGTTGGCTCCTTCCGAGTTTTCTCTAGAGAACAAGG TTCTGCCGCTTTCGTGACCTTGTGGGTGTGTGTGGCGCGGCCGGCAGCGG GTTAAAAGAAGGCACATACGGAACGCACAGCAAGATCGCCTCTTCGCCAG ACGAAACGGCTTGACTTGCCACAAGATTGTTGTGTTTTTTTTTGGAGTGT CGTTTGGTTGGTTTCCAGAATACAGCAGTATACTCCGATCTTATCAGAAG AGCAGCTGTTGCCGTGTGGCGTGTGCACCTCGCGGTCATGTGAGGTAGCA GGCACATATCGCGGGCGGGTTTGCCGCCCTTCGGAGTCAACGCACGGCGT TGCTCACGCAAAGAAAGCAAGAACGGCGTGAGCAGTATTTATTTTCGCAC CTGGTATCGTGCCCATCGCAACCCTTAGATGTCGGCACGCATCAGCCATG AACAATCCCGATCGCGGGCGGCGTCAAATTTTCGTTCTGTGTACGAGAGC ACAGCAAGGTGGCTCCGACTTCAACAGTTTGTAGGAGTATCTGGCGGGCA TTGTATTTCTGTATTCCGTGGCCTCTTTGTCGGCATTCACCGACGACTGG GTTTAGGTTGTGTCCGCGTATTTTGCTACGGATCATCTGCGGTACGGGCG AGACCTGCTCTTGTGCGATGCTGTCGGCACCTAAGCCTGTGCGATTCAGC ATCATGTATCGCACCTATGCATTTGGGTCGCCGCCCCGTTAAGCGCCAGC CATTTTTTTTTCGTTTGTTCGTCACACTGTAAATTAGCGCTCGCATACAG CATTCCTGCGGGGTATGTAGGAGCTGGCTCCAGACCTGTGGTGGTCGCGC AGAAGGTTGAGGTTTCCTCTCCCGTCACCCCGCGGTGCTTGCCTTCGATT TATAATGCGAGAAGAGTTGCAACACCGCTTCCATTCTTGGTAAGTAATGC AGAGTACATGTGCATAAAGCACCACTATTATAGAGGTTCCTATGAATTTC TCGTGATCTCACCTGCCGCCAAAGTTGTCGCACCAATCCATTTCTCTGTA CAAAGTAGAGGGTCCTGTGAATTTATCGTCATCGCACCTGTCGTCAGCGC TGTCGCACCAAAAGTCTTCGAAAAGATGAAACGAATTACTTCCTAGTTTT TACCATGGTATATTCCGTACAAGCAGTATGGGGTTTTTGCACCCATCAGC GTTATGGCACCGGGAGGTGCTACAATTTTATTTTCCGAGATCGGACGTGA TTACAACCAACGATCGCACTTGGTGCGTTTATTCGCACCACTGTGGTAGT CTTTGAACGGCAGCGCACTCCGGAGTGTTGTAAATTCGCCAAATATCGAT GTTGCTATCGTAGGAATCTGCCGTTTGGCCCGGGATCGGAAATTTGAAGT CAAAGAAGCAAGACCATAGGGCCAGAAACTTGAGACTGACAGCGACGATG AACAACCGCTTGAGAGAAGCAGTACAGAGCATGGGAGATGTGACAGAAAC ACCACGCCTGGAAGGCTTTTTGATCCCTTCGGTTCGGGGGAGCGGAGGTG CCCCAGTTTTTCGAGAAATGCTCTAGCACACGCCTGACTACTGCTGTCCA TTCTCATCCATAAGGGGGAGCGGAGGCGGCCAAGTATTGCGAAAATAATC AGAAACAAATGTCCTGACTACTGCTGTCCATTGTCTTCGACACGTGGTCA AGTATTGCGAAGGTGTTTCTGAAACGTAGCCTGACAACTGCAGTCTTATT CTATTCGACAGGGGGGAGCAGAGGTGGCCAAATATTGCTCCGCGCACATC TGTGACGTGGTGAAGGGTACGGAGGCGTTCAAGGAGGGAAACCTTGGCCT GGGTCTGAAGCAGACTTTTCTCAAGATGGACGACATGCTCCGAACTCCCG CTGGACAGGTGAAGCGCTTTCGACTTGGATTTGGTTTGGAAAACTTTGTC TCGGCTAAATCTGGTTTCTCTCTGTGTGTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCCCTCTGTCTGTCTGTCTGTCTGTCTCTACCTCTC TCCTTCTTCCTACGCCGTGTGTCTCCTTTTCGGTTCCTCCCTCATGATCA CTCTTTCCTAGACACGTGGGCTAAGAGGACGATGAAGCAGTGTCGATTGA TTTCCCTGTGCTAGCAGAATGGTTCACCTACCCCCCCCTCAAAACACTCA GGCGGAGCTGCTTGCGCTCAAAAAGGCATCACAGGGTGAGGACAGCGACA GCGATGATGGAGAAGACGGTAAGAATAAGAAAAACTGTTCCTTTTCGCAT CTTGCCGCGAGCACCCGGCTTCCTACCCCCCCCCCTCCCCCCAAGCGTTA GGGGAGAGGACAAGCAAGGAATGTGTGCGTTGAAACATAGCACCCAGGCG TTGATTATGCGTGGCCCCTGATCGTATGTCTTCAGTTGTAGAGAGGTAAG CAAGGCTGTGGCTTGAAGTTGAAACCGGCGGGAGGCAACAAGAGAAACAT ATCATGAAGTTGTTTGGTGTGCTGTTTGCGTACATCGAGGTTTAGAGTTA GTGCGAGTGGCGTGGTAAATCGCTCCCGCGTAGGCGCTCGCTGAGGAATA TATGTAGAATAGTCGCACGGAGCCCCCGCAAGGTGACGCTTACGGAATCA GCGCCCGGGAATATATTGACGATTGGCGTACGTACAGCCTCACGTCTCAA GGCGGTCGTGTGTGTTTTAGAGAATATACACACAGCAGTAGTGACAGATT GACCACAAGATGATACCGCAGCAGTAGCCCAAGGCGATGTGTTTCTGCTT TTGTGGTAGCATCGAGACAGTTTCCGCTTGTTTTTGTGTTTTGGGTGTGC TCCCTTCTTTTTCTTTTTTTTGAGGTATCTTCCTTTTTGTTTGATTTTTT GTTGGCGTCTTCTTTCTTGTCATTCTTGTAGGCTCCTTCCTTTTTTTGTT TTTTTGTTTTGCGTGTTCTTCCAGAAGTGGTCGACATGGACATGCTGTCG AAGATCAACCCGGGGACCCAGATGCAGATCATGGAGCAGATGAAGAGGGC CATGAGGTGAGTACGTTAGCATAAGCCACCAAGATTCAGGACCTTCGCCC TGCCCTGCCCGTAGAACTGTGAGGTATCCGTACCCTGCGACAAGCTTGGG GAACAGGCAGAATAAGAGCAAGCTGCACGTCTGTGCACATACACGGATGA ATATACCACAGGCCTTGTCTGTCTGTGCGCTTGGTGTGGTCGCCACCCGC CTTTACCTACGGCAACGCACAGCCGCCCTTTTCTTCTCTGTTGTTGGTTC TACCTATTCGCTTTGTTGATCTGTCCGGCTAATGCCACAGCCGCCATCGA GTATTGCCGCAACGTTACTGCTGCATTCGACAGAGATCAGTTCCAGAGCG CGGGGGATTTGGCTGAGAGCGGCGGTGGCGGCGACGATGACTCCTCTGAA CATGACGATGATTCAAAATACAGCTCGGAGGAAGAGGAGGAGGAGGAGGA GGAAGGGGGAGGGGACAAGGGCGAGGAGTCGAAGACGGGGGAGGGTGCTG CTGGTTTTCCAGCATCAACAGCAGCAGCGGAAGCACCAGCAATGAAAGCA GCACCGGCGGGCGAGAGTAACGCCGAGGACAAGCCTGAGGAGAAGGAAGA CGGGGGGGCAGCGGAGGCGGAGGCGGCGGCGGCGGCAGGGCCATTGCCAA AACCACTGGCAGCGAAGGGGGGGGAGAGGGCCAAGGGGGACGCGGAGGAG GCGAACTCGACGGCGGAGGAGTGGGCCGATGGTTCTAGCGGTAAGAACCA AGAGACAGCAGTGATCAACAAGACTGGCAGGGGGGAGGGGGGGGGGAGCG TCTTCGCGAGGATTCGTTAGTAGTCTATGAAGTAGAGAGCAGGCCTACCC CTACCCCCTCCTAGAACCATGATAAACATCCTTGCGAAGTCTACTTGGGG GAGGGCGGGGGGGGGAGAAATGTGGAGACTCGGAATAATAAGGGATCATC GTCGGTGGACATTGGAGAGAGGTGGCCATTTTGAAAGGTCGAGTGACCCC GCTCTTTGTGGGCTTCTTCTTGTTTGCTAGACTAGGAAAAGGCGTCTAGG GTTGTAACCGGAACCCGCTGTTTGGACCGCCTTCGCGCGATTATGAAGTT TATGAGGAAATAGAACAGGGAGGGGGGACGCAGAACCTTTTCCCTAACCC TTGCCCTAATGCGACTTCCCCGATTGTATGCTTTATCCAACATATTTACT TAATCGACAAACCCCGCGAACGGCACTGCACAGTTTCTCCACGTTGGCCG AGGGATGCCTCCTACGCGGGAAACCCGATGCGTTCATTAATACCAGATTA AAGGCCCCATGGTCTTGTGCGCCTTCTCGGTGCGCGGAAGGGGTAGAGAG ACACACAGATAGGCAGGCCGACAGCGACGGGGAAATGGAGATACGGAGAT GGAGGCAGAGGCACGGGGAAACTGTTCAGGGGGGAGGGGGGCTACGTGGT GTTTTGATGTTGCGTGGTCCCACCCCTTCCACTCTGTGGGTGATGGACAT ACAGCGCGGGTTTGTGGCATCGACCTGCACACGGAGATACGACCAGCACA GCGTTTGAGGCACTAGGTTTTAGTTGCACCCACCAACGGCTGGGGCCTAC GATGGCTGAAGTCTCCAACACGACGATAACCAAAATACGGTGCCCCCCTT GCGCCCCCTTGCGGATGTTTTTGGAACGCCAGCAGGGTTGGAGCCGGGCG CGCGCCGACGATGCGGGTTCGATTGCGGGGCAACTGCCGTGATGGGACTG CTGGTCGGCGGGAAGACTCTCGTCGTCGCCAACGCGGGAGACTCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7636:1826..7370+

>mRNA_Ecto-sp13_S_contig7636.18854.1 ID=mRNA_Ecto-sp13_S_contig7636.18854.1|Name=mRNA_Ecto-sp13_S_contig7636.18854.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7636:1826..7370+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGCAGGCTGAGACCGCACACCGTTTGTACGCCTCTCCCGACCGTCGC
GTGTGCTTGGCGAGGCGGCGAGGGCTCTCGAAGCGTCCAGGATTTTCTCC
CTGCCTGGCGGGGGAGAAAAGAAGCAGCAATGGGGGCGTATCTGTCGCAG
CCCAACCTCGCAAAGGATACACAAGATGGTGATGATGGGGAGCTGCGTTG
GGGAGCGGCGGGCATGCAAGGCTGGCGCACGGGGATGGAGGACAGCCACC
TGGCCTGCCTTGACCTCAACGGGAAGGACTCGGCGACGCCAGCAGCAGAC
CCGGCTACGAAAATCGCTGCGTTCGCGGTGTTCGATGGTCATGGGGGAGC
AGAGGTGGCCAAATATTGCTCCGCGCACATCTGTGACGTGGTGAAGGGTA
CGGAGGCGTTCAAGGAGGGAAACCTTGGCCTGGGTCTGAAGCAGACTTTT
CTCAAGATGGACGACATGCTCCGAACTCCCGCTGGACAGGCGGAGCTGCT
TGCGCTCAAAAAGGCATCACAGGGTGAGGACAGCGACAGCGATGATGGAG
AAGACGAAGTGGTCGACATGGACATGCTGTCGAAGATCAACCCGGGGACC
CAGATGCAGATCATGGAGCAGATGAAGAGGGCCATGAGAGATCAGTTCCA
GAGCGCGGGGGATTTGGCTGAGAGCGGCGGTGGCGGCGACGATGACTCCT
CTGAACATGACGATGATTCAAAATACAGCTCGGAGGAAGAGGAGGAGGAG
GAGGAGGAAGGGGGAGGGGACAAGGGCGAGGAGTCGAAGACGGGGGAGGG
TGCTGCTGGTTTTCCAGCATCAACAGCAGCAGCGGAAGCACCAGCAATGA
AAGCAGCACCGGCGGGCGAGAGTAACGCCGAGGACAAGCCTGAGGAGAAG
GAAGACGGGGGGGCAGCGGAGGCGGAGGCGGCGGCGGCGGCAGGGCCATT
GCCAAAACCACTGGCAGCGAAGGGGGGGGAGAGGGCCAAGGGGGACGCGG
AGGAGGCGAACTCGACGGCGGAGGAGTGGGCCGATGGTTCTAGCGCAGGG
TTGGAGCCGGGCGCGCGCCGACGATGCGGGTTCGATTGCGGGGCAACTGC
CGTGATGGGACTGCTGGTCGGCGGGAAGACTCTCGTCGTCGCCAACGCGG
GAGACTCG
back to top